npm - @gmod/cram - Versions diffs - 1.7.2 → 1.7.3 - Mend

@gmod/cram 1.7.2 → 1.7.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (13) hide show

package/CHANGELOG.md +5 -0
package/dist/cram-bundle.js +1 -1
package/dist/cramFile/record.js +1 -2
package/dist/cramFile/record.js.map +1 -1
package/dist/cramFile/slice/decodeRecord.js +5 -1
package/dist/cramFile/slice/decodeRecord.js.map +1 -1
package/esm/cramFile/record.js +1 -2
package/esm/cramFile/record.js.map +1 -1
package/esm/cramFile/slice/decodeRecord.js +5 -1
package/esm/cramFile/slice/decodeRecord.js.map +1 -1
package/package.json +1 -1
package/src/cramFile/record.ts +1 -2
package/src/cramFile/slice/decodeRecord.ts +5 -1

package/dist/cramFile/record.js CHANGED Viewed

@@ -34,8 +34,7 @@ function decodeReadSequence(cramRecord, refRegion) {
                 currentReadFeature += 1;
                 if (feature.code === 'b') {
                     // specify a base pair for some reason
-                    const ret = feature.data.split(',');
-                    const added = String.fromCharCode(...ret);
+                    const added = feature.data;
                     bases += added;
                     regionPos += added.length;
                 }

package/dist/cramFile/record.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/dist/cramFile/slice/decodeRecord.js CHANGED Viewed

@@ -120,7 +120,11 @@ function decodeReadFeatures(alignmentStart, readFeatureCount, decodeDataSeries,
             return String.fromCharCode(data);
         }
         if (type === 'string') {
-            return data.toString('utf8');
+            let r = '';
+            for (let i = 0; i < data.byteLength; i++) {
+                r += String.fromCharCode(data[i]);
+            }
+            return r;
         }
         if (type === 'numArray') {
             return data.toArray();

package/dist/cramFile/slice/decodeRecord.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/cramFile/record.js CHANGED Viewed

@@ -28,8 +28,7 @@ function decodeReadSequence(cramRecord, refRegion) {
                 currentReadFeature += 1;
                 if (feature.code === 'b') {
                     // specify a base pair for some reason
-                    const ret = feature.data.split(',');
-                    const added = String.fromCharCode(...ret);
+                    const added = feature.data;
                     bases += added;
                     regionPos += added.length;
                 }

package/esm/cramFile/record.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/cramFile/slice/decodeRecord.js CHANGED Viewed

@@ -115,7 +115,11 @@ function decodeReadFeatures(alignmentStart, readFeatureCount, decodeDataSeries,
             return String.fromCharCode(data);
         }
         if (type === 'string') {
-            return data.toString('utf8');
+            let r = '';
+            for (let i = 0; i < data.byteLength; i++) {
+                r += String.fromCharCode(data[i]);
+            }
+            return r;
         }
         if (type === 'numArray') {
             return data.toArray();

package/esm/cramFile/slice/decodeRecord.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@gmod/cram",
-  "version": "1.7.2",
+  "version": "1.7.3",
   "description": "read CRAM files with pure Javascript",
   "license": "MIT",
   "repository": "GMOD/cram-js",

package/src/cramFile/record.ts CHANGED Viewed

@@ -54,8 +54,7 @@ function decodeReadSequence(
         if (feature.code === 'b') {
           // specify a base pair for some reason
-          const ret = feature.data.split(',')
-          const added = String.fromCharCode(...ret)
+          const added = feature.data
           bases += added
           regionPos += added.length
         } else if (feature.code === 'B') {

package/src/cramFile/slice/decodeRecord.ts CHANGED Viewed

@@ -141,7 +141,11 @@ function decodeReadFeatures(
       return String.fromCharCode(data)
     }
     if (type === 'string') {
-      return data.toString('utf8')
+      let r = ''
+      for (let i = 0; i < data.byteLength; i++) {
+        r += String.fromCharCode(data[i])
+      }
+      return r
     }
     if (type === 'numArray') {
       return data.toArray()