@gmod/cram 1.7.0 → 1.7.2

package/dist/cramFile/codecs/_base.d.ts

@@ -1,17 +1,17 @@
 import CramSlice from '../slice';
 import { CramFileBlock } from '../file';
 import { DataType } from './dataSeriesTypes';
-export declare type DataTypeMapping = {
+export type DataTypeMapping = {
     byte: number;
     int: number;
     long: number;
     byteArray: Uint8Array;
 };
-export declare type Cursor = {
+export type Cursor = {
     bitPosition: 0 | 1 | 2 | 3 | 4 | 5 | 6 | 7;
     bytePosition: number;
 };
-export declare type Cursors = {
+export type Cursors = {
     lastAlignmentStart: number;
     coreBlock: Cursor;
     externalBlocks: {

package/dist/cramFile/codecs/byteArrayLength.d.ts

@@ -3,7 +3,7 @@ import { ByteArrayLengthEncoding, CramEncoding } from '../encoding';
 import CramSlice from '../slice';
 import { CramFileBlock } from '../file';
 import { DataType } from './dataSeriesTypes';
-declare type CramCodecFactory = <TData extends DataType = DataType>(encodingData: CramEncoding, dataType: TData | 'ignore') => CramCodec<TData>;
+type CramCodecFactory = <TData extends DataType = DataType>(encodingData: CramEncoding, dataType: TData | 'ignore') => CramCodec<TData>;
 export default class ByteArrayStopCodec extends CramCodec<'byteArray', ByteArrayLengthEncoding['parameters']> {
     private instantiateCodec;
     constructor(parameters: ByteArrayLengthEncoding['parameters'], dataType: 'byteArray', instantiateCodec: CramCodecFactory);

package/dist/cramFile/codecs/dataSeriesTypes.d.ts

@@ -1,4 +1,4 @@
 import { CramEncoding } from '../encoding';
-export declare type DataType = 'int' | 'byte' | 'long' | 'byteArray';
-export declare type DataSeriesEncodingKey = 'BF' | 'CF' | 'RI' | 'RL' | 'AP' | 'RG' | 'RN' | 'MF' | 'NS' | 'NP' | 'TS' | 'NF' | 'TL' | 'FN' | 'FC' | 'FP' | 'DL' | 'BB' | 'QQ' | 'BS' | 'IN' | 'RS' | 'PD' | 'HC' | 'SC' | 'MQ' | 'BA' | 'QS' | 'TC' | 'TN';
-export declare type DataSeriesEncodingMap = Record<DataSeriesEncodingKey, CramEncoding>;
+export type DataType = 'int' | 'byte' | 'long' | 'byteArray';
+export type DataSeriesEncodingKey = 'BF' | 'CF' | 'RI' | 'RL' | 'AP' | 'RG' | 'RN' | 'MF' | 'NS' | 'NP' | 'TS' | 'NF' | 'TL' | 'FN' | 'FC' | 'FP' | 'DL' | 'BB' | 'QQ' | 'BS' | 'IN' | 'RS' | 'PD' | 'HC' | 'SC' | 'MQ' | 'BA' | 'QS' | 'TC' | 'TN';
+export type DataSeriesEncodingMap = Record<DataSeriesEncodingKey, CramEncoding>;

package/dist/cramFile/container/compressionScheme.d.ts

@@ -34,8 +34,8 @@ declare const dataSeriesTypes: {
     readonly QQ: "byteArray";
     readonly TL: "int";
 };
-export declare type DataSeriesTypes = typeof dataSeriesTypes;
-declare type DataSeriesCache = {
+export type DataSeriesTypes = typeof dataSeriesTypes;
+type DataSeriesCache = {
     [K in DataSeriesEncodingKey]?: CramCodec<DataSeriesTypes[K]>;
 };
 export default class CramContainerCompressionScheme {

package/dist/cramFile/encoding.d.ts

@@ -1,16 +1,16 @@
-export declare type NullEncoding = {
+export type NullEncoding = {
     codecId: 0;
     parametersBytes: number;
     parameters: Record<string, never>;
 };
-export declare type ExternalCramEncoding = {
+export type ExternalCramEncoding = {
     codecId: 1;
     parametersBytes: number;
     parameters: {
         blockContentId: number;
     };
 };
-export declare type GolombEncoding = {
+export type GolombEncoding = {
     codecId: 2;
     parametersBytes: number;
     parameters: {
@@ -18,7 +18,7 @@ export declare type GolombEncoding = {
         M: number;
     };
 };
-export declare type HuffmanEncoding = {
+export type HuffmanEncoding = {
     codecId: 3;
     parametersBytes: number;
     parameters: {
@@ -28,7 +28,7 @@ export declare type HuffmanEncoding = {
         bitLengths: number[];
     };
 };
-export declare type ByteArrayLengthEncoding = {
+export type ByteArrayLengthEncoding = {
     codecId: 4;
     parametersBytes: number;
     parameters: {
@@ -36,7 +36,7 @@ export declare type ByteArrayLengthEncoding = {
         valuesEncoding: CramEncoding;
     };
 };
-export declare type ByteArrayStopCramEncoding = {
+export type ByteArrayStopCramEncoding = {
     codecId: 5;
     parametersBytes: number;
     parameters: {
@@ -44,7 +44,7 @@ export declare type ByteArrayStopCramEncoding = {
         blockContentId: number;
     };
 };
-export declare type BetaEncoding = {
+export type BetaEncoding = {
     codecId: 6;
     parametersBytes: number;
     parameters: {
@@ -52,7 +52,7 @@ export declare type BetaEncoding = {
         length: number;
     };
 };
-export declare type SubexpEncoding = {
+export type SubexpEncoding = {
     codecId: 7;
     parametersBytes: number;
     parameters: {
@@ -60,7 +60,7 @@ export declare type SubexpEncoding = {
         K: number;
     };
 };
-export declare type GolombRiceEncoding = {
+export type GolombRiceEncoding = {
     codecId: 8;
     parametersBytes: number;
     parameters: {
@@ -68,11 +68,11 @@ export declare type GolombRiceEncoding = {
         log2m: number;
     };
 };
-export declare type GammaEncoding = {
+export type GammaEncoding = {
     codecId: 9;
     parametersBytes: number;
     parameters: {
         offset: number;
     };
 };
-export declare type CramEncoding = NullEncoding | ExternalCramEncoding | GolombEncoding | HuffmanEncoding | ByteArrayLengthEncoding | ByteArrayStopCramEncoding | BetaEncoding | SubexpEncoding | GolombRiceEncoding | GammaEncoding;
+export type CramEncoding = NullEncoding | ExternalCramEncoding | GolombEncoding | HuffmanEncoding | ByteArrayLengthEncoding | ByteArrayStopCramEncoding | BetaEncoding | SubexpEncoding | GolombRiceEncoding | GammaEncoding;

package/dist/cramFile/file.d.ts

@@ -5,18 +5,18 @@ import CramContainer from './container';
 import { Parser } from '@gmod/binary-parser';
 import CramRecord from './record';
 import { Filehandle } from './filehandle';
-export declare type CramFileSource = {
+export type CramFileSource = {
     filehandle?: Filehandle;
     url?: string;
     path?: string;
 };
-export declare type SeqFetch = (seqId: number, start: number, end: number) => Promise<string>;
-export declare type CramFileArgs = CramFileSource & {
+export type SeqFetch = (seqId: number, start: number, end: number) => Promise<string>;
+export type CramFileArgs = CramFileSource & {
     checkSequenceMD5: boolean;
     cacheSize?: number;
     seqFetch: SeqFetch;
 };
-export declare type CramFileBlock = BlockHeader & {
+export type CramFileBlock = BlockHeader & {
     _endPosition: number;
     contentPosition: number;
     _size: number;

package/dist/cramFile/index.d.ts

@@ -1,2 +1,3 @@
 import CramFile from './file';
+export { default as CramRecord } from './record';
 export default CramFile;

package/dist/cramFile/index.js

@@ -3,6 +3,9 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.CramRecord = void 0;
 const file_1 = __importDefault(require("./file"));
+var record_1 = require("./record");
+Object.defineProperty(exports, "CramRecord", { enumerable: true, get: function () { return __importDefault(record_1).default; } });
 exports.default = file_1.default;
 //# sourceMappingURL=index.js.map

package/dist/cramFile/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/cramFile/index.ts"],"names":[],"mappings":";;;;;AAAA,kDAA6B;AAE7B,kBAAe,cAAQ,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/cramFile/index.ts"],"names":[],"mappings":";;;;;;AAAA,kDAA6B;AAC7B,mCAAgD;AAAvC,qHAAA,OAAO,OAAc;AAE9B,kBAAe,cAAQ,CAAA"}

package/dist/cramFile/record.d.ts

@@ -1,11 +1,11 @@
 import CramContainerCompressionScheme from './container/compressionScheme';
 import decodeRecord from './slice/decodeRecord';
-export declare type RefRegion = {
+export type RefRegion = {
     start: number;
     end: number;
     seq: string;
 };
-export declare type ReadFeature = {
+export type ReadFeature = {
     code: string;
     pos: number;
     refPos: number;
@@ -13,7 +13,7 @@ export declare type ReadFeature = {
     ref?: string;
     sub?: string;
 };
-export declare type MateRecord = {
+export type MateRecord = {
     readName?: string;
     sequenceId: number;
     alignmentStart: number;
@@ -23,10 +23,10 @@ export declare type MateRecord = {
 export declare const BamFlags: readonly [readonly [1, "Paired"], readonly [2, "ProperlyPaired"], readonly [4, "SegmentUnmapped"], readonly [8, "MateUnmapped"], readonly [16, "ReverseComplemented"], readonly [32, "MateReverseComplemented"], readonly [64, "Read1"], readonly [128, "Read2"], readonly [256, "Secondary"], readonly [512, "FailedQc"], readonly [1024, "Duplicate"], readonly [2048, "Supplementary"]];
 export declare const CramFlags: readonly [readonly [1, "PreservingQualityScores"], readonly [2, "Detached"], readonly [4, "WithMateDownstream"], readonly [8, "DecodeSequenceAsStar"]];
 export declare const MateFlags: readonly [readonly [1, "OnNegativeStrand"], readonly [2, "Unmapped"]];
-declare type FlagsDecoder<Type> = {
+type FlagsDecoder<Type> = {
     [Property in Type as `is${Capitalize<string & Property>}`]: (flags: number) => boolean;
 };
-declare type FlagsEncoder<Type> = {
+type FlagsEncoder<Type> = {
     [Property in Type as `set${Capitalize<string & Property>}`]: (flags: number) => number;
 };
 export declare const BamFlagsDecoder: FlagsDecoder<"Paired" | "ProperlyPaired" | "SegmentUnmapped" | "MateUnmapped" | "ReverseComplemented" | "MateReverseComplemented" | "Read1" | "Read2" | "Secondary" | "FailedQc" | "Duplicate" | "Supplementary"> & FlagsEncoder<"Paired" | "ProperlyPaired" | "SegmentUnmapped" | "MateUnmapped" | "ReverseComplemented" | "MateReverseComplemented" | "Read1" | "Read2" | "Secondary" | "FailedQc" | "Duplicate" | "Supplementary">;

package/dist/cramFile/sectionParsers.d.ts

@@ -7,8 +7,8 @@ declare const cramFileDefinition: {
     parser: Parser<unknown>;
     maxLength: number;
 };
-export declare type CramTagDictionary = string[][];
-export declare type CramPreservationMap = {
+export type CramTagDictionary = string[][];
+export type CramPreservationMap = {
     MI: boolean;
     UI: boolean;
     PI: boolean;
@@ -18,7 +18,7 @@ export declare type CramPreservationMap = {
     SM: [number, number, number, number, number];
     TD: CramTagDictionary;
 };
-export declare type MappedSliceHeader = {
+export type MappedSliceHeader = {
     refSeqId: number;
     refSeqStart: number;
     refSeqSpan: number;
@@ -30,7 +30,7 @@ export declare type MappedSliceHeader = {
     refBaseBlockId: number;
     md5: TupleOf<number, 16>;
 };
-export declare type UnmappedSliceHeader = {
+export type UnmappedSliceHeader = {
     numRecords: number;
     recordCounter: number;
     numBlocks: number;
@@ -39,15 +39,15 @@ export declare type UnmappedSliceHeader = {
     md5: TupleOf<number, 16>;
 };
 export declare function isMappedSliceHeader(header: MappedSliceHeader | UnmappedSliceHeader): header is MappedSliceHeader;
-export declare type CompressionMethod = 'raw' | 'gzip' | 'bzip2' | 'lzma' | 'rans' | 'rans4x16' | 'arith' | 'fqzcomp' | 'tok3';
-export declare type BlockHeader = {
+export type CompressionMethod = 'raw' | 'gzip' | 'bzip2' | 'lzma' | 'rans' | 'rans4x16' | 'arith' | 'fqzcomp' | 'tok3';
+export type BlockHeader = {
     compressionMethod: CompressionMethod;
     contentType: 'FILE_HEADER' | 'COMPRESSION_HEADER' | 'MAPPED_SLICE_HEADER' | 'UNMAPPED_SLICE_HEADER' | 'EXTERNAL_DATA' | 'CORE_DATA';
     contentId: number;
     compressedSize: number;
     uncompressedSize: number;
 };
-export declare type CramCompressionHeader = ParsedItem<{
+export type CramCompressionHeader = ParsedItem<{
     preservation: CramPreservationMap;
     dataSeriesEncoding: DataSeriesEncodingMap;
     tagEncoding: Record<string, CramEncoding>;

package/dist/cramFile/slice/decodeRecord.d.ts

@@ -4,7 +4,7 @@ import CramContainerCompressionScheme, { DataSeriesTypes } from '../container/co
 import { CramFileBlock } from '../file';
 import { Cursors, DataTypeMapping } from '../codecs/_base';
 import { DataSeriesEncodingKey } from '../codecs/dataSeriesTypes';
-export declare type DataSeriesDecoder = <T extends DataSeriesEncodingKey>(dataSeriesName: T) => DataTypeMapping[DataSeriesTypes[T]];
+export type DataSeriesDecoder = <T extends DataSeriesEncodingKey>(dataSeriesName: T) => DataTypeMapping[DataSeriesTypes[T]];
 export default function decodeRecord(slice: CramSlice, decodeDataSeries: DataSeriesDecoder, compressionScheme: CramContainerCompressionScheme, sliceHeader: SliceHeader, coreDataBlock: CramFileBlock, blocksByContentId: Record<number, CramFileBlock>, cursors: Cursors, majorVersion: number, recordNumber: number): {
     readLength: number;
     sequenceId: number;

package/dist/cramFile/slice/index.d.ts

@@ -2,7 +2,7 @@ import CramRecord from '../record';
 import CramContainer from '../container';
 import { CramFileBlock } from '../file';
 import { MappedSliceHeader, UnmappedSliceHeader } from '../sectionParsers';
-export declare type SliceHeader = CramFileBlock & {
+export type SliceHeader = CramFileBlock & {
     parsedContent: MappedSliceHeader | UnmappedSliceHeader;
 };
 export default class CramSlice {

package/dist/cramFile/util.d.ts

@@ -2,7 +2,7 @@
 import { Parser } from '@gmod/binary-parser';
 export declare function itf8Size(v: number): 1 | 2 | 3 | 4 | 5;
 export declare function parseItf8(buffer: Uint8Array, initialOffset: number): [number, number];
-export declare type ParsedItem<T> = T & {
+export type ParsedItem<T> = T & {
     _endPosition: number;
     _size: number;
 };

package/dist/index.d.ts

@@ -1,4 +1,4 @@
-import CramFile from './cramFile';
+import CramFile, { CramRecord } from './cramFile';
 import IndexedCramFile from './indexedCramFile';
 import CraiIndex from './craiIndex';
-export { CramFile, IndexedCramFile, CraiIndex };
+export { CramFile, IndexedCramFile, CraiIndex, CramRecord };

package/dist/index.js

@@ -1,11 +1,35 @@
 "use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.CraiIndex = exports.IndexedCramFile = exports.CramFile = void 0;
-const cramFile_1 = __importDefault(require("./cramFile"));
+exports.CramRecord = exports.CraiIndex = exports.IndexedCramFile = exports.CramFile = void 0;
+const cramFile_1 = __importStar(require("./cramFile"));
 exports.CramFile = cramFile_1.default;
+Object.defineProperty(exports, "CramRecord", { enumerable: true, get: function () { return cramFile_1.CramRecord; } });
 const indexedCramFile_1 = __importDefault(require("./indexedCramFile"));
 exports.IndexedCramFile = indexedCramFile_1.default;
 const craiIndex_1 = __importDefault(require("./craiIndex"));

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;AAAA,0DAAiC;AAIxB,mBAJF,kBAAQ,CAIE;AAHjB,wEAA+C;AAG5B,0BAHZ,yBAAe,CAGY;AAFlC,4DAAmC;AAEC,oBAF7B,mBAAS,CAE6B"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,uDAAiD;AAIxC,mBAJF,kBAAQ,CAIE;AAA8B,2FAJ5B,qBAAU,OAI4B;AAHzD,wEAA+C;AAG5B,0BAHZ,yBAAe,CAGY;AAFlC,4DAAmC;AAEC,oBAF7B,mBAAS,CAE6B"}

package/dist/indexedCramFile.d.ts

@@ -3,12 +3,12 @@ import CramRecord from './cramFile/record';
 import { SeqFetch } from './cramFile/file';
 import { Filehandle } from './cramFile/filehandle';
 import { Slice } from './craiIndex';
-export declare type CramFileSource = {
+export type CramFileSource = {
     cramFilehandle?: Filehandle;
     cramUrl?: string;
     cramPath?: string;
 };
-export declare type CramIndexLike = {
+export type CramIndexLike = {
     getEntriesForRange: (seqId: number, start: number, end: number) => Promise<Slice[]>;
     hasDataForReferenceSequence: (seqId: number) => Promise<boolean>;
 };

package/dist/sam.d.ts

@@ -1,4 +1,4 @@
-export declare type HeaderDataItem = {
+export type HeaderDataItem = {
     tag: string;
     data: Array<{
         tag: string;

package/dist/typescript.d.ts

@@ -1,3 +1,3 @@
 export declare function ensureNotNullish<T>(x: T | null | undefined): T;
-export declare type TupleOf<T, N extends number> = N extends N ? number extends N ? T[] : _TupleOf<T, N, []> : never;
-export declare type _TupleOf<T, N extends number, R extends unknown[]> = R['length'] extends N ? R : _TupleOf<T, N, [T, ...R]>;
+export type TupleOf<T, N extends number> = N extends N ? number extends N ? T[] : _TupleOf<T, N, []> : never;
+export type _TupleOf<T, N extends number, R extends unknown[]> = R['length'] extends N ? R : _TupleOf<T, N, [T, ...R]>;

package/esm/craiIndex.d.ts

@@ -1,12 +1,12 @@
 import { CramFileSource } from './cramFile/file';
-export declare type Slice = {
+export type Slice = {
     start: number;
     span: number;
     containerStart: number;
     sliceStart: number;
     sliceBytes: number;
 };
-declare type ParsedIndex = Record<string, Slice[]>;
+type ParsedIndex = Record<string, Slice[]>;
 export default class CraiIndex {
     private _parseCache;
     private filehandle;

package/esm/cramFile/codecs/_base.d.ts

@@ -1,17 +1,17 @@
 import CramSlice from '../slice';
 import { CramFileBlock } from '../file';
 import { DataType } from './dataSeriesTypes';
-export declare type DataTypeMapping = {
+export type DataTypeMapping = {
     byte: number;
     int: number;
     long: number;
     byteArray: Uint8Array;
 };
-export declare type Cursor = {
+export type Cursor = {
     bitPosition: 0 | 1 | 2 | 3 | 4 | 5 | 6 | 7;
     bytePosition: number;
 };
-export declare type Cursors = {
+export type Cursors = {
     lastAlignmentStart: number;
     coreBlock: Cursor;
     externalBlocks: {

package/esm/cramFile/codecs/byteArrayLength.d.ts

@@ -3,7 +3,7 @@ import { ByteArrayLengthEncoding, CramEncoding } from '../encoding';
 import CramSlice from '../slice';
 import { CramFileBlock } from '../file';
 import { DataType } from './dataSeriesTypes';
-declare type CramCodecFactory = <TData extends DataType = DataType>(encodingData: CramEncoding, dataType: TData | 'ignore') => CramCodec<TData>;
+type CramCodecFactory = <TData extends DataType = DataType>(encodingData: CramEncoding, dataType: TData | 'ignore') => CramCodec<TData>;
 export default class ByteArrayStopCodec extends CramCodec<'byteArray', ByteArrayLengthEncoding['parameters']> {
     private instantiateCodec;
     constructor(parameters: ByteArrayLengthEncoding['parameters'], dataType: 'byteArray', instantiateCodec: CramCodecFactory);

package/esm/cramFile/codecs/dataSeriesTypes.d.ts

@@ -1,4 +1,4 @@
 import { CramEncoding } from '../encoding';
-export declare type DataType = 'int' | 'byte' | 'long' | 'byteArray';
-export declare type DataSeriesEncodingKey = 'BF' | 'CF' | 'RI' | 'RL' | 'AP' | 'RG' | 'RN' | 'MF' | 'NS' | 'NP' | 'TS' | 'NF' | 'TL' | 'FN' | 'FC' | 'FP' | 'DL' | 'BB' | 'QQ' | 'BS' | 'IN' | 'RS' | 'PD' | 'HC' | 'SC' | 'MQ' | 'BA' | 'QS' | 'TC' | 'TN';
-export declare type DataSeriesEncodingMap = Record<DataSeriesEncodingKey, CramEncoding>;
+export type DataType = 'int' | 'byte' | 'long' | 'byteArray';
+export type DataSeriesEncodingKey = 'BF' | 'CF' | 'RI' | 'RL' | 'AP' | 'RG' | 'RN' | 'MF' | 'NS' | 'NP' | 'TS' | 'NF' | 'TL' | 'FN' | 'FC' | 'FP' | 'DL' | 'BB' | 'QQ' | 'BS' | 'IN' | 'RS' | 'PD' | 'HC' | 'SC' | 'MQ' | 'BA' | 'QS' | 'TC' | 'TN';
+export type DataSeriesEncodingMap = Record<DataSeriesEncodingKey, CramEncoding>;

package/esm/cramFile/container/compressionScheme.d.ts

@@ -34,8 +34,8 @@ declare const dataSeriesTypes: {
     readonly QQ: "byteArray";
     readonly TL: "int";
 };
-export declare type DataSeriesTypes = typeof dataSeriesTypes;
-declare type DataSeriesCache = {
+export type DataSeriesTypes = typeof dataSeriesTypes;
+type DataSeriesCache = {
     [K in DataSeriesEncodingKey]?: CramCodec<DataSeriesTypes[K]>;
 };
 export default class CramContainerCompressionScheme {

package/esm/cramFile/encoding.d.ts

@@ -1,16 +1,16 @@
-export declare type NullEncoding = {
+export type NullEncoding = {
     codecId: 0;
     parametersBytes: number;
     parameters: Record<string, never>;
 };
-export declare type ExternalCramEncoding = {
+export type ExternalCramEncoding = {
     codecId: 1;
     parametersBytes: number;
     parameters: {
         blockContentId: number;
     };
 };
-export declare type GolombEncoding = {
+export type GolombEncoding = {
     codecId: 2;
     parametersBytes: number;
     parameters: {
@@ -18,7 +18,7 @@ export declare type GolombEncoding = {
         M: number;
     };
 };
-export declare type HuffmanEncoding = {
+export type HuffmanEncoding = {
     codecId: 3;
     parametersBytes: number;
     parameters: {
@@ -28,7 +28,7 @@ export declare type HuffmanEncoding = {
         bitLengths: number[];
     };
 };
-export declare type ByteArrayLengthEncoding = {
+export type ByteArrayLengthEncoding = {
     codecId: 4;
     parametersBytes: number;
     parameters: {
@@ -36,7 +36,7 @@ export declare type ByteArrayLengthEncoding = {
         valuesEncoding: CramEncoding;
     };
 };
-export declare type ByteArrayStopCramEncoding = {
+export type ByteArrayStopCramEncoding = {
     codecId: 5;
     parametersBytes: number;
     parameters: {
@@ -44,7 +44,7 @@ export declare type ByteArrayStopCramEncoding = {
         blockContentId: number;
     };
 };
-export declare type BetaEncoding = {
+export type BetaEncoding = {
     codecId: 6;
     parametersBytes: number;
     parameters: {
@@ -52,7 +52,7 @@ export declare type BetaEncoding = {
         length: number;
     };
 };
-export declare type SubexpEncoding = {
+export type SubexpEncoding = {
     codecId: 7;
     parametersBytes: number;
     parameters: {
@@ -60,7 +60,7 @@ export declare type SubexpEncoding = {
         K: number;
     };
 };
-export declare type GolombRiceEncoding = {
+export type GolombRiceEncoding = {
     codecId: 8;
     parametersBytes: number;
     parameters: {
@@ -68,11 +68,11 @@ export declare type GolombRiceEncoding = {
         log2m: number;
     };
 };
-export declare type GammaEncoding = {
+export type GammaEncoding = {
     codecId: 9;
     parametersBytes: number;
     parameters: {
         offset: number;
     };
 };
-export declare type CramEncoding = NullEncoding | ExternalCramEncoding | GolombEncoding | HuffmanEncoding | ByteArrayLengthEncoding | ByteArrayStopCramEncoding | BetaEncoding | SubexpEncoding | GolombRiceEncoding | GammaEncoding;
+export type CramEncoding = NullEncoding | ExternalCramEncoding | GolombEncoding | HuffmanEncoding | ByteArrayLengthEncoding | ByteArrayStopCramEncoding | BetaEncoding | SubexpEncoding | GolombRiceEncoding | GammaEncoding;

package/esm/cramFile/file.d.ts

@@ -5,18 +5,18 @@ import CramContainer from './container';
 import { Parser } from '@gmod/binary-parser';
 import CramRecord from './record';
 import { Filehandle } from './filehandle';
-export declare type CramFileSource = {
+export type CramFileSource = {
     filehandle?: Filehandle;
     url?: string;
     path?: string;
 };
-export declare type SeqFetch = (seqId: number, start: number, end: number) => Promise<string>;
-export declare type CramFileArgs = CramFileSource & {
+export type SeqFetch = (seqId: number, start: number, end: number) => Promise<string>;
+export type CramFileArgs = CramFileSource & {
     checkSequenceMD5: boolean;
     cacheSize?: number;
     seqFetch: SeqFetch;
 };
-export declare type CramFileBlock = BlockHeader & {
+export type CramFileBlock = BlockHeader & {
     _endPosition: number;
     contentPosition: number;
     _size: number;

package/esm/cramFile/index.d.ts

@@ -1,2 +1,3 @@
 import CramFile from './file';
+export { default as CramRecord } from './record';
 export default CramFile;

package/esm/cramFile/index.js

@@ -1,3 +1,4 @@
 import CramFile from './file';
+export { default as CramRecord } from './record';
 export default CramFile;
 //# sourceMappingURL=index.js.map

package/esm/cramFile/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/cramFile/index.ts"],"names":[],"mappings":"AAAA,OAAO,QAAQ,MAAM,QAAQ,CAAA;AAE7B,eAAe,QAAQ,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/cramFile/index.ts"],"names":[],"mappings":"AAAA,OAAO,QAAQ,MAAM,QAAQ,CAAA;AAC7B,OAAO,EAAE,OAAO,IAAI,UAAU,EAAE,MAAM,UAAU,CAAA;AAEhD,eAAe,QAAQ,CAAA"}

package/esm/cramFile/record.d.ts

@@ -1,11 +1,11 @@
 import CramContainerCompressionScheme from './container/compressionScheme';
 import decodeRecord from './slice/decodeRecord';
-export declare type RefRegion = {
+export type RefRegion = {
     start: number;
     end: number;
     seq: string;
 };
-export declare type ReadFeature = {
+export type ReadFeature = {
     code: string;
     pos: number;
     refPos: number;
@@ -13,7 +13,7 @@ export declare type ReadFeature = {
     ref?: string;
     sub?: string;
 };
-export declare type MateRecord = {
+export type MateRecord = {
     readName?: string;
     sequenceId: number;
     alignmentStart: number;
@@ -23,10 +23,10 @@ export declare type MateRecord = {
 export declare const BamFlags: readonly [readonly [1, "Paired"], readonly [2, "ProperlyPaired"], readonly [4, "SegmentUnmapped"], readonly [8, "MateUnmapped"], readonly [16, "ReverseComplemented"], readonly [32, "MateReverseComplemented"], readonly [64, "Read1"], readonly [128, "Read2"], readonly [256, "Secondary"], readonly [512, "FailedQc"], readonly [1024, "Duplicate"], readonly [2048, "Supplementary"]];
 export declare const CramFlags: readonly [readonly [1, "PreservingQualityScores"], readonly [2, "Detached"], readonly [4, "WithMateDownstream"], readonly [8, "DecodeSequenceAsStar"]];
 export declare const MateFlags: readonly [readonly [1, "OnNegativeStrand"], readonly [2, "Unmapped"]];
-declare type FlagsDecoder<Type> = {
+type FlagsDecoder<Type> = {
     [Property in Type as `is${Capitalize<string & Property>}`]: (flags: number) => boolean;
 };
-declare type FlagsEncoder<Type> = {
+type FlagsEncoder<Type> = {
     [Property in Type as `set${Capitalize<string & Property>}`]: (flags: number) => number;
 };
 export declare const BamFlagsDecoder: FlagsDecoder<"Paired" | "ProperlyPaired" | "SegmentUnmapped" | "MateUnmapped" | "ReverseComplemented" | "MateReverseComplemented" | "Read1" | "Read2" | "Secondary" | "FailedQc" | "Duplicate" | "Supplementary"> & FlagsEncoder<"Paired" | "ProperlyPaired" | "SegmentUnmapped" | "MateUnmapped" | "ReverseComplemented" | "MateReverseComplemented" | "Read1" | "Read2" | "Secondary" | "FailedQc" | "Duplicate" | "Supplementary">;