@gmod/bbi 9.0.9 → 9.0.12

package/esm/block-view.js

@@ -2,7 +2,7 @@ import AbortablePromiseCache from '@gmod/abortable-promise-cache';
 import QuickLRU from '@jbrowse/quick-lru';
 import { mergeRanges } from "./range.js";
 import { decompressAndParseBigWigBlocks, decompressAndParseSummaryBlocks, unzipBatch, } from "./unzip.js";
-import { groupBlocks } from "./util.js";
+import { getDataView, groupBlocks } from "./util.js";
 const decoder = new TextDecoder('utf8');
 const CIR_TREE_MAGIC = 0x2468ace0;
 function coordFilter(s1, e1, s2, e2) {
@@ -36,7 +36,7 @@ function parseSummaryBlock(b, startOffset, request) {
                 maxScore,
                 minScore,
                 summary: true,
-                score: sumData / (validCnt || 1),
+                score: validCnt ? sumData / validCnt : 0,
             });
         }
     }
@@ -235,6 +235,66 @@ function parseBigWigBlockAsArrays(buffer, startOffset, req) {
     }
     return { starts, ends, scores };
 }
+function parseSummaryBlockAsArrays(b, startOffset, request) {
+    const dataView = new DataView(b.buffer, b.byteOffset, b.length);
+    const maxItems = Math.floor((b.byteLength - startOffset) / 32);
+    const starts = new Int32Array(maxItems);
+    const ends = new Int32Array(maxItems);
+    const scores = new Float32Array(maxItems);
+    const minScores = new Float32Array(maxItems);
+    const maxScores = new Float32Array(maxItems);
+    let idx = 0;
+    let offset = startOffset;
+    while (offset < b.byteLength) {
+        const chromId = dataView.getUint32(offset, true);
+        offset += 4;
+        const start = dataView.getUint32(offset, true);
+        offset += 4;
+        const end = dataView.getUint32(offset, true);
+        offset += 4;
+        const validCnt = dataView.getUint32(offset, true);
+        offset += 4;
+        const minScore = dataView.getFloat32(offset, true);
+        offset += 4;
+        const maxScore = dataView.getFloat32(offset, true);
+        offset += 4;
+        const sumData = dataView.getFloat32(offset, true);
+        offset += 8;
+        if (!request ||
+            (chromId === request.chrId &&
+                coordFilter(start, end, request.start, request.end))) {
+            starts[idx] = start;
+            ends[idx] = end;
+            scores[idx] = validCnt ? sumData / validCnt : 0;
+            minScores[idx] = minScore;
+            maxScores[idx] = maxScore;
+            idx++;
+        }
+    }
+    if (idx < maxItems) {
+        return {
+            starts: starts.subarray(0, idx),
+            ends: ends.subarray(0, idx),
+            scores: scores.subarray(0, idx),
+            minScores: minScores.subarray(0, idx),
+            maxScores: maxScores.subarray(0, idx),
+        };
+    }
+    return { starts, ends, scores, minScores, maxScores };
+}
+function parseBlock(blockType, data, blockOffset, request) {
+    switch (blockType) {
+        case 'summary':
+            return parseSummaryBlock(data, 0, request);
+        case 'bigwig':
+            return parseBigWigBlock(data, 0, request);
+        case 'bigbed':
+            return parseBigBedBlock(data, 0, blockOffset * (1 << 8), request);
+        default:
+            console.warn(`Don't know what to do with ${blockType}`);
+            return [];
+    }
+}
 /**
  * View into a subset of the data in a BigWig file.
  *
@@ -250,7 +310,7 @@ export class BlockView {
     // R-tree index header cache - R-trees are spatial data structures used to
     // efficiently query genomic intervals by chromosome and position
     rTreePromise;
-    featureCache = new AbortablePromiseCache({
+    rTreeNodeCache = new AbortablePromiseCache({
         cache: new QuickLRU({ maxSize: 1000 }),
         fill: async ({ length, offset }, signal) => this.bbi.read(length, offset, { signal }),
     });
@@ -274,10 +334,15 @@ export class BlockView {
             return undefined;
         }
         if (!this.rTreePromise) {
-            this.rTreePromise = this.bbi.read(48, this.rTreeOffset, opts);
+            this.rTreePromise = this.bbi
+                .read(48, this.rTreeOffset, opts)
+                .catch((e) => {
+                this.rTreePromise = undefined;
+                throw e;
+            });
         }
         const buffer = await this.rTreePromise;
-        const dataView = new DataView(buffer.buffer, buffer.byteOffset, buffer.length);
+        const dataView = getDataView(buffer);
         const magic = dataView.getUint32(0, true);
         if (magic !== CIR_TREE_MAGIC) {
             throw new Error(`invalid cirTree magic: 0x${magic.toString(16)} (expected 0x${CIR_TREE_MAGIC.toString(16)}) at offset ${this.rTreeOffset}, file may be corrupt or unsupported`);
@@ -295,39 +360,35 @@ export class BlockView {
             for (const { min, max } of spans) {
                 const length = max - min;
                 const offset = min;
-                const resultBuffer = await this.featureCache.get(`${length}_${offset}`, { length, offset }, opts?.signal);
+                const resultBuffer = await this.rTreeNodeCache.get(`${length}_${offset}`, { length, offset }, opts?.signal);
                 for (const element of currentOffsets) {
                     if (min <= element && element <= max) {
                         const data = resultBuffer.subarray(element - offset);
-                        const dv = new DataView(data.buffer, data.byteOffset, data.length);
+                        const dv = getDataView(data);
                         const isLeaf = dv.getUint8(0);
                         const count = dv.getUint16(2, true);
-                        let nodeOffset = 4;
-                        if (isLeaf === 1) {
-                            for (let i = 0; i < count; i++) {
-                                const startChrom = dv.getUint32(nodeOffset, true);
-                                const startBase = dv.getUint32(nodeOffset + 4, true);
-                                const endChrom = dv.getUint32(nodeOffset + 8, true);
-                                const endBase = dv.getUint32(nodeOffset + 12, true);
-                                const blockOffset = Number(dv.getBigUint64(nodeOffset + 16, true));
-                                const blockSize = Number(dv.getBigUint64(nodeOffset + 24, true));
-                                nodeOffset += 32;
-                                if (blockIntersectsQuery(startChrom, startBase, endChrom, endBase)) {
-                                    blocks.push({ offset: blockOffset, length: blockSize });
-                                }
-                            }
-                        }
-                        else if (isLeaf === 0) {
+                        if (isLeaf === 1 || isLeaf === 0) {
+                            const entrySize = isLeaf === 1 ? 32 : 24;
+                            let nodeOffset = 4;
                             for (let i = 0; i < count; i++) {
                                 const startChrom = dv.getUint32(nodeOffset, true);
                                 const startBase = dv.getUint32(nodeOffset + 4, true);
                                 const endChrom = dv.getUint32(nodeOffset + 8, true);
                                 const endBase = dv.getUint32(nodeOffset + 12, true);
-                                const childOffset = Number(dv.getBigUint64(nodeOffset + 16, true));
-                                nodeOffset += 24;
                                 if (blockIntersectsQuery(startChrom, startBase, endChrom, endBase)) {
-                                    nextOffsets.push(childOffset);
+                                    const childOrBlockOffset = Number(dv.getBigUint64(nodeOffset + 16, true));
+                                    if (isLeaf === 1) {
+                                        const blockSize = Number(dv.getBigUint64(nodeOffset + 24, true));
+                                        blocks.push({
+                                            offset: childOrBlockOffset,
+                                            length: blockSize,
+                                        });
+                                    }
+                                    else {
+                                        nextOffsets.push(childOrBlockOffset);
+                                    }
                                 }
+                                nodeOffset += entrySize;
                             }
                         }
                     }
@@ -350,15 +411,26 @@ export class BlockView {
     }
     async readWigDataAsArrays(chrName, start, end, opts) {
         const collected = await this._collectBlocks(chrName, start, end, opts);
-        const blocks = collected?.blocks ?? [];
-        const request = collected
-            ? { chrId: collected.chrId, start, end }
-            : undefined;
-        const optsWithReq = { ...opts, request };
         if (this.blockType === 'summary') {
-            return this._readSummaryFeaturesAsArrays(blocks, optsWithReq);
+            return collected
+                ? this._readSummaryFeaturesAsArrays(collected.blocks, { chrId: collected.chrId, start, end }, opts)
+                : {
+                    starts: new Int32Array(0),
+                    ends: new Int32Array(0),
+                    scores: new Float32Array(0),
+                    minScores: new Float32Array(0),
+                    maxScores: new Float32Array(0),
+                    isSummary: true,
+                };
         }
-        return this._readBigWigFeaturesAsArrays(blocks, optsWithReq);
+        return collected
+            ? this._readBigWigFeaturesAsArrays(collected.blocks, { chrId: collected.chrId, start, end }, opts)
+            : {
+                starts: new Int32Array(0),
+                ends: new Int32Array(0),
+                scores: new Float32Array(0),
+                isSummary: false,
+            };
     }
     async readFeatures(blocks, opts = {}) {
         const { blockType, uncompressBufSize } = this;
@@ -371,57 +443,36 @@ export class BlockView {
             });
             const groupOffset = blockGroup.offset;
             const subBlocks = blockGroup.blocks;
-            let decompressedData;
-            let decompressedOffsets;
             if (uncompressBufSize > 0) {
-                const localBlocks = [];
-                for (const block of subBlocks) {
-                    localBlocks.push({
-                        offset: block.offset - groupOffset,
-                        length: block.length,
-                    });
+                const localBlocks = subBlocks.map(block => ({
+                    offset: block.offset - groupOffset,
+                    length: block.length,
+                }));
+                const { data: decompressedData, offsets } = await unzipBatch(data, localBlocks, uncompressBufSize);
+                for (let i = 0; i < subBlocks.length; i++) {
+                    const resultData = decompressedData.subarray(offsets[i], offsets[i + 1]);
+                    const features = parseBlock(blockType, resultData, subBlocks[i].offset, request);
+                    for (const f of features) {
+                        allFeatures.push(f);
+                    }
                 }
-                const result = await unzipBatch(data, localBlocks, uncompressBufSize);
-                decompressedData = result.data;
-                decompressedOffsets = result.offsets;
             }
             else {
-                decompressedData = data;
-                decompressedOffsets = [];
                 for (const block of subBlocks) {
-                    decompressedOffsets.push(block.offset - groupOffset);
-                }
-                decompressedOffsets.push(data.length);
-            }
-            for (let i = 0; i < subBlocks.length; i++) {
-                const start = decompressedOffsets[i];
-                const end = decompressedOffsets[i + 1];
-                const resultData = decompressedData.subarray(start, end);
-                let features;
-                switch (blockType) {
-                    case 'summary':
-                        features = parseSummaryBlock(resultData, 0, request);
-                        break;
-                    case 'bigwig':
-                        features = parseBigWigBlock(resultData, 0, request);
-                        break;
-                    case 'bigbed':
-                        features = parseBigBedBlock(resultData, 0, subBlocks[i].offset * (1 << 8), request);
-                        break;
-                    default:
-                        features = [];
-                        console.warn(`Don't know what to do with ${blockType}`);
-                }
-                for (const f of features) {
-                    allFeatures.push(f);
+                    const start = block.offset - groupOffset;
+                    const resultData = data.subarray(start, start + block.length);
+                    const features = parseBlock(blockType, resultData, block.offset, request);
+                    for (const f of features) {
+                        allFeatures.push(f);
+                    }
                 }
             }
         }
         return allFeatures;
     }
-    async _readBigWigFeaturesAsArrays(blocks, opts = {}) {
+    async _readBigWigFeaturesAsArrays(blocks, request, opts = {}) {
         const { uncompressBufSize } = this;
-        const { signal, request } = opts;
+        const { signal } = opts;
         const blockGroupsToFetch = groupBlocks(blocks);
         const allStarts = [];
         const allEnds = [];
@@ -435,7 +486,7 @@ export class BlockView {
                 length: block.length,
             }));
             if (uncompressBufSize > 0) {
-                const result = await decompressAndParseBigWigBlocks(data, localBlocks, uncompressBufSize, request?.start ?? 0, request?.end ?? 0);
+                const result = await decompressAndParseBigWigBlocks(data, localBlocks, uncompressBufSize, request.start, request.end);
                 if (result.starts.length > 0) {
                     allStarts.push(result.starts);
                     allEnds.push(result.ends);
@@ -484,9 +535,9 @@ export class BlockView {
         }
         return { starts, ends, scores, isSummary: false };
     }
-    async _readSummaryFeaturesAsArrays(blocks, opts = {}) {
+    async _readSummaryFeaturesAsArrays(blocks, request, opts = {}) {
         const { uncompressBufSize } = this;
-        const { signal, request } = opts;
+        const { signal } = opts;
         const blockGroupsToFetch = groupBlocks(blocks);
         const allStarts = [];
         const allEnds = [];
@@ -502,7 +553,7 @@ export class BlockView {
                 length: block.length,
             }));
             if (uncompressBufSize > 0) {
-                const result = await decompressAndParseSummaryBlocks(data, localBlocks, uncompressBufSize, request?.chrId ?? 0, request?.start ?? 0, request?.end ?? 0);
+                const result = await decompressAndParseSummaryBlocks(data, localBlocks, uncompressBufSize, request.chrId, request.start, request.end);
                 if (result.starts.length > 0) {
                     allStarts.push(result.starts);
                     allEnds.push(result.ends);
@@ -515,27 +566,14 @@ export class BlockView {
             else {
                 for (const block of localBlocks) {
                     const blockData = data.subarray(block.offset, block.offset + block.length);
-                    const features = parseSummaryBlock(blockData, 0, request);
-                    if (features.length > 0) {
-                        const starts = new Int32Array(features.length);
-                        const ends = new Int32Array(features.length);
-                        const scores = new Float32Array(features.length);
-                        const minScores = new Float32Array(features.length);
-                        const maxScores = new Float32Array(features.length);
-                        for (let i = 0; i < features.length; i++) {
-                            const f = features[i];
-                            starts[i] = f.start;
-                            ends[i] = f.end;
-                            scores[i] = f.score ?? 0;
-                            minScores[i] = f.minScore ?? 0;
-                            maxScores[i] = f.maxScore ?? 0;
-                        }
-                        allStarts.push(starts);
-                        allEnds.push(ends);
-                        allScores.push(scores);
-                        allMinScores.push(minScores);
-                        allMaxScores.push(maxScores);
-                        totalCount += features.length;
+                    const result = parseSummaryBlockAsArrays(blockData, 0, request);
+                    if (result.starts.length > 0) {
+                        allStarts.push(result.starts);
+                        allEnds.push(result.ends);
+                        allScores.push(result.scores);
+                        allMinScores.push(result.minScores);
+                        allMaxScores.push(result.maxScores);
+                        totalCount += result.starts.length;
                     }
                 }
             }

package/esm/block-view.js.map

@@ -1 +1 @@
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package/esm/range.js

@@ -1,7 +1,10 @@
 // Merges overlapping or adjacent byte ranges so that nearby R-tree nodes can
 // be fetched in a single read rather than many small reads
 export function mergeRanges(ranges) {
-    const sorted = [...ranges].sort((a, b) => a.min !== b.min ? a.min - b.min : a.max - b.max);
+    if (ranges.length === 0) {
+        return [];
+    }
+    const sorted = ranges.toSorted((a, b) => a.min - b.min);
     const merged = [];
     let current = sorted[0];
     for (let i = 1; i < sorted.length; i++) {

package/esm/range.js.map

@@ -1 +1 @@
-{"version":3,"file":"range.js","sourceRoot":"","sources":["../src/range.ts"],"names":[],"mappings":"AAKA,6EAA6E;AAC7E,2DAA2D;AAC3D,MAAM,UAAU,WAAW,CAAC,MAAgB;IAC1C,MAAM,MAAM,GAAG,CAAC,GAAG,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CACvC,CAAC,CAAC,GAAG,KAAK,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,GAAG,CAChD,CAAA;IAED,MAAM,MAAM,GAAa,EAAE,CAAA;IAC3B,IAAI,OAAO,GAAG,MAAM,CAAC,CAAC,CAAE,CAAA;IAExB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACvC,MAAM,GAAG,GAAG,MAAM,CAAC,CAAC,CAAE,CAAA;QACtB,IAAI,GAAG,CAAC,GAAG,GAAG,OAAO,CAAC,GAAG,GAAG,CAAC,EAAE,CAAC;YAC9B,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,CAAA;YACpB,OAAO,GAAG,GAAG,CAAA;QACf,CAAC;aAAM,IAAI,GAAG,CAAC,GAAG,GAAG,OAAO,CAAC,GAAG,EAAE,CAAC;YACjC,OAAO,GAAG,EAAE,GAAG,EAAE,OAAO,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,GAAG,EAAE,CAAA;QAC9C,CAAC;IACH,CAAC;IACD,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,CAAA;IAEpB,OAAO,MAAM,CAAA;AACf,CAAC"}
+{"version":3,"file":"range.js","sourceRoot":"","sources":["../src/range.ts"],"names":[],"mappings":"AAKA,6EAA6E;AAC7E,2DAA2D;AAC3D,MAAM,UAAU,WAAW,CAAC,MAAgB;IAC1C,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACxB,OAAO,EAAE,CAAA;IACX,CAAC;IACD,MAAM,MAAM,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,GAAG,CAAC,CAAA;IAEvD,MAAM,MAAM,GAAa,EAAE,CAAA;IAC3B,IAAI,OAAO,GAAG,MAAM,CAAC,CAAC,CAAE,CAAA;IAExB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACvC,MAAM,GAAG,GAAG,MAAM,CAAC,CAAC,CAAE,CAAA;QACtB,IAAI,GAAG,CAAC,GAAG,GAAG,OAAO,CAAC,GAAG,GAAG,CAAC,EAAE,CAAC;YAC9B,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,CAAA;YACpB,OAAO,GAAG,GAAG,CAAA;QACf,CAAC;aAAM,IAAI,GAAG,CAAC,GAAG,GAAG,OAAO,CAAC,GAAG,EAAE,CAAC;YACjC,OAAO,GAAG,EAAE,GAAG,EAAE,OAAO,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,GAAG,EAAE,CAAA;QAC9C,CAAC;IACH,CAAC;IACD,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,CAAA;IAEpB,OAAO,MAAM,CAAA;AACf,CAAC"}

package/esm/types.d.ts

@@ -1,6 +1,5 @@
 export interface ZoomLevel {
     reductionLevel: number;
-    reserved: number;
     dataOffset: number;
     indexOffset: number;
 }

package/esm/unzip.d.ts

@@ -9,19 +9,9 @@ export declare function unzipBatch(data: Uint8Array, blocks: {
 export declare function decompressAndParseBigWigBlocks(data: Uint8Array, blocks: {
     offset: number;
     length: number;
-}[], maxOutputSize: number, reqStart: number, reqEnd: number): Promise<{
-    starts: Int32Array<any>;
-    ends: Int32Array<any>;
-    scores: Float32Array<any>;
-}>;
+}[], maxOutputSize: number, reqStart: number, reqEnd: number): Promise<import("./wasm/inflate-wasm-inlined.js").WasmBigWigArrays>;
 export declare function decompressAndParseSummaryBlocks(data: Uint8Array, blocks: {
     offset: number;
     length: number;
-}[], maxOutputSize: number, reqChrId: number, reqStart: number, reqEnd: number): Promise<{
-    starts: Int32Array<any>;
-    ends: Int32Array<any>;
-    scores: Float32Array<any>;
-    minScores: Float32Array<any>;
-    maxScores: Float32Array<any>;
-}>;
+}[], maxOutputSize: number, reqChrId: number, reqStart: number, reqEnd: number): Promise<import("./wasm/inflate-wasm-inlined.js").WasmSummaryArrays>;
 export type { BigWigFeatureArrays, SummaryFeatureArrays } from './types.ts';

package/esm/unzip.js

@@ -1,5 +1,5 @@
 import { decompressAndParseBigWig, decompressAndParseSummary, inflateRawBatch, } from './wasm/inflate-wasm-inlined.js';
-export async function unzipBatch(data, blocks, maxOutputSize) {
+function blocksToTypedArrays(blocks) {
     const inputOffsets = new Uint32Array(blocks.length);
     const inputLengths = new Uint32Array(blocks.length);
     for (let i = 0; i < blocks.length; i++) {
@@ -7,26 +7,18 @@ export async function unzipBatch(data, blocks, maxOutputSize) {
         inputOffsets[i] = block.offset;
         inputLengths[i] = block.length;
     }
+    return { inputOffsets, inputLengths };
+}
+export async function unzipBatch(data, blocks, maxOutputSize) {
+    const { inputOffsets, inputLengths } = blocksToTypedArrays(blocks);
     return inflateRawBatch(data, inputOffsets, inputLengths, maxOutputSize);
 }
 export async function decompressAndParseBigWigBlocks(data, blocks, maxOutputSize, reqStart, reqEnd) {
-    const inputOffsets = new Uint32Array(blocks.length);
-    const inputLengths = new Uint32Array(blocks.length);
-    for (let i = 0; i < blocks.length; i++) {
-        const block = blocks[i];
-        inputOffsets[i] = block.offset;
-        inputLengths[i] = block.length;
-    }
+    const { inputOffsets, inputLengths } = blocksToTypedArrays(blocks);
     return decompressAndParseBigWig(data, inputOffsets, inputLengths, maxOutputSize, reqStart, reqEnd);
 }
 export async function decompressAndParseSummaryBlocks(data, blocks, maxOutputSize, reqChrId, reqStart, reqEnd) {
-    const inputOffsets = new Uint32Array(blocks.length);
-    const inputLengths = new Uint32Array(blocks.length);
-    for (let i = 0; i < blocks.length; i++) {
-        const block = blocks[i];
-        inputOffsets[i] = block.offset;
-        inputLengths[i] = block.length;
-    }
+    const { inputOffsets, inputLengths } = blocksToTypedArrays(blocks);
     return decompressAndParseSummary(data, inputOffsets, inputLengths, maxOutputSize, reqChrId, reqStart, reqEnd);
 }
 //# sourceMappingURL=unzip.js.map

package/esm/unzip.js.map

@@ -1 +1 @@
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+{"version":3,"file":"unzip.js","sourceRoot":"","sources":["../src/unzip.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,wBAAwB,EACxB,yBAAyB,EACzB,eAAe,GAChB,MAAM,gCAAgC,CAAA;AAOvC,SAAS,mBAAmB,CAAC,MAA4C;IACvE,MAAM,YAAY,GAAG,IAAI,WAAW,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;IACnD,MAAM,YAAY,GAAG,IAAI,WAAW,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;IACnD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACvC,MAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAE,CAAA;QACxB,YAAY,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,MAAM,CAAA;QAC9B,YAAY,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,MAAM,CAAA;IAChC,CAAC;IACD,OAAO,EAAE,YAAY,EAAE,YAAY,EAAE,CAAA;AACvC,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,UAAU,CAC9B,IAAgB,EAChB,MAA4C,EAC5C,aAAqB;IAErB,MAAM,EAAE,YAAY,EAAE,YAAY,EAAE,GAAG,mBAAmB,CAAC,MAAM,CAAC,CAAA;IAClE,OAAO,eAAe,CAAC,IAAI,EAAE,YAAY,EAAE,YAAY,EAAE,aAAa,CAAC,CAAA;AACzE,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,8BAA8B,CAClD,IAAgB,EAChB,MAA4C,EAC5C,aAAqB,EACrB,QAAgB,EAChB,MAAc;IAEd,MAAM,EAAE,YAAY,EAAE,YAAY,EAAE,GAAG,mBAAmB,CAAC,MAAM,CAAC,CAAA;IAClE,OAAO,wBAAwB,CAC7B,IAAI,EACJ,YAAY,EACZ,YAAY,EACZ,aAAa,EACb,QAAQ,EACR,MAAM,CACP,CAAA;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,+BAA+B,CACnD,IAAgB,EAChB,MAA4C,EAC5C,aAAqB,EACrB,QAAgB,EAChB,QAAgB,EAChB,MAAc;IAEd,MAAM,EAAE,YAAY,EAAE,YAAY,EAAE,GAAG,mBAAmB,CAAC,MAAM,CAAC,CAAA;IAClE,OAAO,yBAAyB,CAC9B,IAAI,EACJ,YAAY,EACZ,YAAY,EACZ,aAAa,EACb,QAAQ,EACR,QAAQ,EACR,MAAM,CACP,CAAA;AACH,CAAC"}

package/esm/util.d.ts

@@ -1,8 +1,9 @@
-interface Block {
+export interface Block {
     offset: number;
     length: number;
 }
+export declare function getDataView(buffer: Uint8Array, byteOffset?: number): DataView<ArrayBufferLike>;
+export declare function parseKey(buffer: Uint8Array, offset: number, keySize: number): string;
 export declare function groupBlocks(blocks: Block[]): (Block & {
     blocks: Block[];
 })[];
-export {};

package/esm/util.js

@@ -1,3 +1,13 @@
+const decoder = new TextDecoder('utf8');
+export function getDataView(buffer, byteOffset = 0) {
+    return new DataView(buffer.buffer, buffer.byteOffset + byteOffset, buffer.length - byteOffset);
+}
+// Decode a null-terminated fixed-width key from a B+ tree node
+export function parseKey(buffer, offset, keySize) {
+    const nullPos = buffer.indexOf(0, offset);
+    const end = nullPos !== -1 && nullPos < offset + keySize ? nullPos : offset + keySize;
+    return decoder.decode(buffer.subarray(offset, end));
+}
 // sort blocks by file offset and
 // group blocks that are within 2KB of eachother
 export function groupBlocks(blocks) {
@@ -6,7 +16,7 @@ export function groupBlocks(blocks) {
     let lastBlock;
     let lastBlockEnd;
     for (const block of blocks) {
-        if (lastBlock && lastBlockEnd && block.offset - lastBlockEnd <= 2000) {
+        if (lastBlock && block.offset - lastBlockEnd <= 2000) {
             lastBlock.length = block.offset + block.length - lastBlock.offset;
             lastBlock.blocks.push(block);
             lastBlockEnd = block.offset + block.length;

package/esm/util.js.map

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