@gmod/bbi 9.0.9 → 9.0.11

package/dist/wasm/inflate_wasm.js

@@ -1,49 +0,0 @@
-"use strict";
-/* @ts-self-types="./inflate_wasm.d.ts" */
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.parse_summary_block = exports.parse_bigwig_block = exports.inflate_raw_unknown_size = exports.inflate_raw_batch = exports.inflate_raw = exports.decompress_and_parse_summary = exports.decompress_and_parse_bigwig = void 0;
-const wasm = __importStar(require("./inflate_wasm_bg.wasm"));
-const inflate_wasm_bg_js_1 = require("./inflate_wasm_bg.js");
-(0, inflate_wasm_bg_js_1.__wbg_set_wasm)(wasm);
-var inflate_wasm_bg_js_2 = require("./inflate_wasm_bg.js");
-Object.defineProperty(exports, "decompress_and_parse_bigwig", { enumerable: true, get: function () { return inflate_wasm_bg_js_2.decompress_and_parse_bigwig; } });
-Object.defineProperty(exports, "decompress_and_parse_summary", { enumerable: true, get: function () { return inflate_wasm_bg_js_2.decompress_and_parse_summary; } });
-Object.defineProperty(exports, "inflate_raw", { enumerable: true, get: function () { return inflate_wasm_bg_js_2.inflate_raw; } });
-Object.defineProperty(exports, "inflate_raw_batch", { enumerable: true, get: function () { return inflate_wasm_bg_js_2.inflate_raw_batch; } });
-Object.defineProperty(exports, "inflate_raw_unknown_size", { enumerable: true, get: function () { return inflate_wasm_bg_js_2.inflate_raw_unknown_size; } });
-Object.defineProperty(exports, "parse_bigwig_block", { enumerable: true, get: function () { return inflate_wasm_bg_js_2.parse_bigwig_block; } });
-Object.defineProperty(exports, "parse_summary_block", { enumerable: true, get: function () { return inflate_wasm_bg_js_2.parse_summary_block; } });
-//# sourceMappingURL=inflate_wasm.js.map

package/dist/wasm/inflate_wasm.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"inflate_wasm.js","sourceRoot":"","sources":["../../src/wasm/inflate_wasm.js"],"names":[],"mappings":";AAAA,0CAA0C;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAE1C,6DAA+C;AAC/C,6DAAsD;AACtD,IAAA,mCAAc,EAAC,IAAI,CAAC,CAAC;AAErB,2DAE8B;AAD1B,iIAAA,2BAA2B,OAAA;AAAE,kIAAA,4BAA4B,OAAA;AAAE,iHAAA,WAAW,OAAA;AAAE,uHAAA,iBAAiB,OAAA;AAAE,8HAAA,wBAAwB,OAAA;AAAE,wHAAA,kBAAkB,OAAA;AAAE,yHAAA,mBAAmB,OAAA"}

package/dist/wasm/inflate_wasm_bg.d.ts

@@ -1,68 +0,0 @@
-/**
- * Combined decompress + parse for BigWig blocks
- * Returns same format as parse_bigwig_block but handles multiple compressed blocks
- * @param {Uint8Array} inputs
- * @param {Uint32Array} input_offsets
- * @param {Uint32Array} input_lengths
- * @param {number} max_block_size
- * @param {number} req_start
- * @param {number} req_end
- * @returns {Uint8Array}
- */
-export function decompress_and_parse_bigwig(inputs: Uint8Array, input_offsets: Uint32Array, input_lengths: Uint32Array, max_block_size: number, req_start: number, req_end: number): Uint8Array;
-/**
- * Combined decompress + parse for summary blocks
- * @param {Uint8Array} inputs
- * @param {Uint32Array} input_offsets
- * @param {Uint32Array} input_lengths
- * @param {number} max_block_size
- * @param {number} req_chr_id
- * @param {number} req_start
- * @param {number} req_end
- * @returns {Uint8Array}
- */
-export function decompress_and_parse_summary(inputs: Uint8Array, input_offsets: Uint32Array, input_lengths: Uint32Array, max_block_size: number, req_chr_id: number, req_start: number, req_end: number): Uint8Array;
-/**
- * @param {Uint8Array} input
- * @param {number} output_size
- * @returns {Uint8Array}
- */
-export function inflate_raw(input: Uint8Array, output_size: number): Uint8Array;
-/**
- * @param {Uint8Array} inputs
- * @param {Uint32Array} input_offsets
- * @param {Uint32Array} input_lengths
- * @param {number} max_block_size
- * @returns {Uint8Array}
- */
-export function inflate_raw_batch(inputs: Uint8Array, input_offsets: Uint32Array, input_lengths: Uint32Array, max_block_size: number): Uint8Array;
-/**
- * @param {Uint8Array} input
- * @returns {Uint8Array}
- */
-export function inflate_raw_unknown_size(input: Uint8Array): Uint8Array;
-/**
- * Parse a BigWig data block and return packed typed arrays
- * Block types: 1 = bedGraph, 2 = varstep, 3 = fixedstep
- *
- * Returns packed binary: [count: u32][starts: i32*count][ends: i32*count][scores: f32*count]
- * @param {Uint8Array} data
- * @param {number} req_start
- * @param {number} req_end
- * @returns {Uint8Array}
- */
-export function parse_bigwig_block(data: Uint8Array, req_start: number, req_end: number): Uint8Array;
-/**
- * Parse a BigWig summary block and return packed typed arrays
- * Summary blocks contain: chromId, start, end, validCnt, minScore, maxScore, sumData, sumSqData
- *
- * Returns: [count: u32][starts: i32*n][ends: i32*n][scores: f32*n][minScores: f32*n][maxScores: f32*n]
- * @param {Uint8Array} data
- * @param {number} req_chr_id
- * @param {number} req_start
- * @param {number} req_end
- * @returns {Uint8Array}
- */
-export function parse_summary_block(data: Uint8Array, req_chr_id: number, req_start: number, req_end: number): Uint8Array;
-export function __wbg_Error_55538483de6e3abe(arg0: any, arg1: any): number;
-export function __wbg_set_wasm(val: any): void;

package/dist/wasm/inflate_wasm_bg.js

@@ -1,306 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.decompress_and_parse_bigwig = decompress_and_parse_bigwig;
-exports.decompress_and_parse_summary = decompress_and_parse_summary;
-exports.inflate_raw = inflate_raw;
-exports.inflate_raw_batch = inflate_raw_batch;
-exports.inflate_raw_unknown_size = inflate_raw_unknown_size;
-exports.parse_bigwig_block = parse_bigwig_block;
-exports.parse_summary_block = parse_summary_block;
-exports.__wbg_Error_55538483de6e3abe = __wbg_Error_55538483de6e3abe;
-exports.__wbg_set_wasm = __wbg_set_wasm;
-/**
- * Combined decompress + parse for BigWig blocks
- * Returns same format as parse_bigwig_block but handles multiple compressed blocks
- * @param {Uint8Array} inputs
- * @param {Uint32Array} input_offsets
- * @param {Uint32Array} input_lengths
- * @param {number} max_block_size
- * @param {number} req_start
- * @param {number} req_end
- * @returns {Uint8Array}
- */
-function decompress_and_parse_bigwig(inputs, input_offsets, input_lengths, max_block_size, req_start, req_end) {
-    try {
-        const retptr = wasm.__wbindgen_add_to_stack_pointer(-16);
-        const ptr0 = passArray8ToWasm0(inputs, wasm.__wbindgen_export);
-        const len0 = WASM_VECTOR_LEN;
-        const ptr1 = passArray32ToWasm0(input_offsets, wasm.__wbindgen_export);
-        const len1 = WASM_VECTOR_LEN;
-        const ptr2 = passArray32ToWasm0(input_lengths, wasm.__wbindgen_export);
-        const len2 = WASM_VECTOR_LEN;
-        wasm.decompress_and_parse_bigwig(retptr, ptr0, len0, ptr1, len1, ptr2, len2, max_block_size, req_start, req_end);
-        var r0 = getDataViewMemory0().getInt32(retptr + 4 * 0, true);
-        var r1 = getDataViewMemory0().getInt32(retptr + 4 * 1, true);
-        var r2 = getDataViewMemory0().getInt32(retptr + 4 * 2, true);
-        var r3 = getDataViewMemory0().getInt32(retptr + 4 * 3, true);
-        if (r3) {
-            throw takeObject(r2);
-        }
-        var v4 = getArrayU8FromWasm0(r0, r1).slice();
-        wasm.__wbindgen_export2(r0, r1 * 1, 1);
-        return v4;
-    }
-    finally {
-        wasm.__wbindgen_add_to_stack_pointer(16);
-    }
-}
-/**
- * Combined decompress + parse for summary blocks
- * @param {Uint8Array} inputs
- * @param {Uint32Array} input_offsets
- * @param {Uint32Array} input_lengths
- * @param {number} max_block_size
- * @param {number} req_chr_id
- * @param {number} req_start
- * @param {number} req_end
- * @returns {Uint8Array}
- */
-function decompress_and_parse_summary(inputs, input_offsets, input_lengths, max_block_size, req_chr_id, req_start, req_end) {
-    try {
-        const retptr = wasm.__wbindgen_add_to_stack_pointer(-16);
-        const ptr0 = passArray8ToWasm0(inputs, wasm.__wbindgen_export);
-        const len0 = WASM_VECTOR_LEN;
-        const ptr1 = passArray32ToWasm0(input_offsets, wasm.__wbindgen_export);
-        const len1 = WASM_VECTOR_LEN;
-        const ptr2 = passArray32ToWasm0(input_lengths, wasm.__wbindgen_export);
-        const len2 = WASM_VECTOR_LEN;
-        wasm.decompress_and_parse_summary(retptr, ptr0, len0, ptr1, len1, ptr2, len2, max_block_size, req_chr_id, req_start, req_end);
-        var r0 = getDataViewMemory0().getInt32(retptr + 4 * 0, true);
-        var r1 = getDataViewMemory0().getInt32(retptr + 4 * 1, true);
-        var r2 = getDataViewMemory0().getInt32(retptr + 4 * 2, true);
-        var r3 = getDataViewMemory0().getInt32(retptr + 4 * 3, true);
-        if (r3) {
-            throw takeObject(r2);
-        }
-        var v4 = getArrayU8FromWasm0(r0, r1).slice();
-        wasm.__wbindgen_export2(r0, r1 * 1, 1);
-        return v4;
-    }
-    finally {
-        wasm.__wbindgen_add_to_stack_pointer(16);
-    }
-}
-/**
- * @param {Uint8Array} input
- * @param {number} output_size
- * @returns {Uint8Array}
- */
-function inflate_raw(input, output_size) {
-    try {
-        const retptr = wasm.__wbindgen_add_to_stack_pointer(-16);
-        const ptr0 = passArray8ToWasm0(input, wasm.__wbindgen_export);
-        const len0 = WASM_VECTOR_LEN;
-        wasm.inflate_raw(retptr, ptr0, len0, output_size);
-        var r0 = getDataViewMemory0().getInt32(retptr + 4 * 0, true);
-        var r1 = getDataViewMemory0().getInt32(retptr + 4 * 1, true);
-        var r2 = getDataViewMemory0().getInt32(retptr + 4 * 2, true);
-        var r3 = getDataViewMemory0().getInt32(retptr + 4 * 3, true);
-        if (r3) {
-            throw takeObject(r2);
-        }
-        var v2 = getArrayU8FromWasm0(r0, r1).slice();
-        wasm.__wbindgen_export2(r0, r1 * 1, 1);
-        return v2;
-    }
-    finally {
-        wasm.__wbindgen_add_to_stack_pointer(16);
-    }
-}
-/**
- * @param {Uint8Array} inputs
- * @param {Uint32Array} input_offsets
- * @param {Uint32Array} input_lengths
- * @param {number} max_block_size
- * @returns {Uint8Array}
- */
-function inflate_raw_batch(inputs, input_offsets, input_lengths, max_block_size) {
-    try {
-        const retptr = wasm.__wbindgen_add_to_stack_pointer(-16);
-        const ptr0 = passArray8ToWasm0(inputs, wasm.__wbindgen_export);
-        const len0 = WASM_VECTOR_LEN;
-        const ptr1 = passArray32ToWasm0(input_offsets, wasm.__wbindgen_export);
-        const len1 = WASM_VECTOR_LEN;
-        const ptr2 = passArray32ToWasm0(input_lengths, wasm.__wbindgen_export);
-        const len2 = WASM_VECTOR_LEN;
-        wasm.inflate_raw_batch(retptr, ptr0, len0, ptr1, len1, ptr2, len2, max_block_size);
-        var r0 = getDataViewMemory0().getInt32(retptr + 4 * 0, true);
-        var r1 = getDataViewMemory0().getInt32(retptr + 4 * 1, true);
-        var r2 = getDataViewMemory0().getInt32(retptr + 4 * 2, true);
-        var r3 = getDataViewMemory0().getInt32(retptr + 4 * 3, true);
-        if (r3) {
-            throw takeObject(r2);
-        }
-        var v4 = getArrayU8FromWasm0(r0, r1).slice();
-        wasm.__wbindgen_export2(r0, r1 * 1, 1);
-        return v4;
-    }
-    finally {
-        wasm.__wbindgen_add_to_stack_pointer(16);
-    }
-}
-/**
- * @param {Uint8Array} input
- * @returns {Uint8Array}
- */
-function inflate_raw_unknown_size(input) {
-    try {
-        const retptr = wasm.__wbindgen_add_to_stack_pointer(-16);
-        const ptr0 = passArray8ToWasm0(input, wasm.__wbindgen_export);
-        const len0 = WASM_VECTOR_LEN;
-        wasm.inflate_raw_unknown_size(retptr, ptr0, len0);
-        var r0 = getDataViewMemory0().getInt32(retptr + 4 * 0, true);
-        var r1 = getDataViewMemory0().getInt32(retptr + 4 * 1, true);
-        var r2 = getDataViewMemory0().getInt32(retptr + 4 * 2, true);
-        var r3 = getDataViewMemory0().getInt32(retptr + 4 * 3, true);
-        if (r3) {
-            throw takeObject(r2);
-        }
-        var v2 = getArrayU8FromWasm0(r0, r1).slice();
-        wasm.__wbindgen_export2(r0, r1 * 1, 1);
-        return v2;
-    }
-    finally {
-        wasm.__wbindgen_add_to_stack_pointer(16);
-    }
-}
-/**
- * Parse a BigWig data block and return packed typed arrays
- * Block types: 1 = bedGraph, 2 = varstep, 3 = fixedstep
- *
- * Returns packed binary: [count: u32][starts: i32*count][ends: i32*count][scores: f32*count]
- * @param {Uint8Array} data
- * @param {number} req_start
- * @param {number} req_end
- * @returns {Uint8Array}
- */
-function parse_bigwig_block(data, req_start, req_end) {
-    try {
-        const retptr = wasm.__wbindgen_add_to_stack_pointer(-16);
-        const ptr0 = passArray8ToWasm0(data, wasm.__wbindgen_export);
-        const len0 = WASM_VECTOR_LEN;
-        wasm.parse_bigwig_block(retptr, ptr0, len0, req_start, req_end);
-        var r0 = getDataViewMemory0().getInt32(retptr + 4 * 0, true);
-        var r1 = getDataViewMemory0().getInt32(retptr + 4 * 1, true);
-        var v2 = getArrayU8FromWasm0(r0, r1).slice();
-        wasm.__wbindgen_export2(r0, r1 * 1, 1);
-        return v2;
-    }
-    finally {
-        wasm.__wbindgen_add_to_stack_pointer(16);
-    }
-}
-/**
- * Parse a BigWig summary block and return packed typed arrays
- * Summary blocks contain: chromId, start, end, validCnt, minScore, maxScore, sumData, sumSqData
- *
- * Returns: [count: u32][starts: i32*n][ends: i32*n][scores: f32*n][minScores: f32*n][maxScores: f32*n]
- * @param {Uint8Array} data
- * @param {number} req_chr_id
- * @param {number} req_start
- * @param {number} req_end
- * @returns {Uint8Array}
- */
-function parse_summary_block(data, req_chr_id, req_start, req_end) {
-    try {
-        const retptr = wasm.__wbindgen_add_to_stack_pointer(-16);
-        const ptr0 = passArray8ToWasm0(data, wasm.__wbindgen_export);
-        const len0 = WASM_VECTOR_LEN;
-        wasm.parse_summary_block(retptr, ptr0, len0, req_chr_id, req_start, req_end);
-        var r0 = getDataViewMemory0().getInt32(retptr + 4 * 0, true);
-        var r1 = getDataViewMemory0().getInt32(retptr + 4 * 1, true);
-        var v2 = getArrayU8FromWasm0(r0, r1).slice();
-        wasm.__wbindgen_export2(r0, r1 * 1, 1);
-        return v2;
-    }
-    finally {
-        wasm.__wbindgen_add_to_stack_pointer(16);
-    }
-}
-function __wbg_Error_55538483de6e3abe(arg0, arg1) {
-    const ret = Error(getStringFromWasm0(arg0, arg1));
-    return addHeapObject(ret);
-}
-function addHeapObject(obj) {
-    if (heap_next === heap.length)
-        heap.push(heap.length + 1);
-    const idx = heap_next;
-    heap_next = heap[idx];
-    heap[idx] = obj;
-    return idx;
-}
-function dropObject(idx) {
-    if (idx < 1028)
-        return;
-    heap[idx] = heap_next;
-    heap_next = idx;
-}
-function getArrayU8FromWasm0(ptr, len) {
-    ptr = ptr >>> 0;
-    return getUint8ArrayMemory0().subarray(ptr / 1, ptr / 1 + len);
-}
-let cachedDataViewMemory0 = null;
-function getDataViewMemory0() {
-    if (cachedDataViewMemory0 === null || cachedDataViewMemory0.buffer.detached === true || (cachedDataViewMemory0.buffer.detached === undefined && cachedDataViewMemory0.buffer !== wasm.memory.buffer)) {
-        cachedDataViewMemory0 = new DataView(wasm.memory.buffer);
-    }
-    return cachedDataViewMemory0;
-}
-function getStringFromWasm0(ptr, len) {
-    ptr = ptr >>> 0;
-    return decodeText(ptr, len);
-}
-let cachedUint32ArrayMemory0 = null;
-function getUint32ArrayMemory0() {
-    if (cachedUint32ArrayMemory0 === null || cachedUint32ArrayMemory0.byteLength === 0) {
-        cachedUint32ArrayMemory0 = new Uint32Array(wasm.memory.buffer);
-    }
-    return cachedUint32ArrayMemory0;
-}
-let cachedUint8ArrayMemory0 = null;
-function getUint8ArrayMemory0() {
-    if (cachedUint8ArrayMemory0 === null || cachedUint8ArrayMemory0.byteLength === 0) {
-        cachedUint8ArrayMemory0 = new Uint8Array(wasm.memory.buffer);
-    }
-    return cachedUint8ArrayMemory0;
-}
-function getObject(idx) { return heap[idx]; }
-let heap = new Array(1024).fill(undefined);
-heap.push(undefined, null, true, false);
-let heap_next = heap.length;
-function passArray32ToWasm0(arg, malloc) {
-    const ptr = malloc(arg.length * 4, 4) >>> 0;
-    getUint32ArrayMemory0().set(arg, ptr / 4);
-    WASM_VECTOR_LEN = arg.length;
-    return ptr;
-}
-function passArray8ToWasm0(arg, malloc) {
-    const ptr = malloc(arg.length * 1, 1) >>> 0;
-    getUint8ArrayMemory0().set(arg, ptr / 1);
-    WASM_VECTOR_LEN = arg.length;
-    return ptr;
-}
-function takeObject(idx) {
-    const ret = getObject(idx);
-    dropObject(idx);
-    return ret;
-}
-let cachedTextDecoder = new TextDecoder('utf-8', { ignoreBOM: true, fatal: true });
-cachedTextDecoder.decode();
-const MAX_SAFARI_DECODE_BYTES = 2146435072;
-let numBytesDecoded = 0;
-function decodeText(ptr, len) {
-    numBytesDecoded += len;
-    if (numBytesDecoded >= MAX_SAFARI_DECODE_BYTES) {
-        cachedTextDecoder = new TextDecoder('utf-8', { ignoreBOM: true, fatal: true });
-        cachedTextDecoder.decode();
-        numBytesDecoded = len;
-    }
-    return cachedTextDecoder.decode(getUint8ArrayMemory0().subarray(ptr, ptr + len));
-}
-let WASM_VECTOR_LEN = 0;
-let wasm;
-function __wbg_set_wasm(val) {
-    wasm = val;
-}
-//# sourceMappingURL=inflate_wasm_bg.js.map

package/dist/wasm/inflate_wasm_bg.js.map

@@ -1 +0,0 @@
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package/esm/wasm/inflate-wasm-inlined.d.ts

@@ -1,18 +0,0 @@
-export function decompressAndParseBigWig(inputs: any, inputOffsets: any, inputLengths: any, maxBlockSize: any, reqStart: any, reqEnd: any): Promise<{
-    starts: Int32Array<any>;
-    ends: Int32Array<any>;
-    scores: Float32Array<any>;
-}>;
-export function decompressAndParseSummary(inputs: any, inputOffsets: any, inputLengths: any, maxBlockSize: any, reqChrId: any, reqStart: any, reqEnd: any): Promise<{
-    starts: Int32Array<any>;
-    ends: Int32Array<any>;
-    scores: Float32Array<any>;
-    minScores: Float32Array<any>;
-    maxScores: Float32Array<any>;
-}>;
-export function inflateRaw(input: any, outputSize: any): Promise<Uint8Array<ArrayBufferLike>>;
-export function inflateRawBatch(inputs: any, inputOffsets: any, inputLengths: any, maxOutputSize: any): Promise<{
-    data: Uint8Array<ArrayBufferLike>;
-    offsets: any[];
-}>;
-export function inflateRawUnknownSize(input: any): Promise<Uint8Array<ArrayBufferLike>>;