@gmod/bbi 9.0.11 → 9.0.13

package/dist/array-feature-view.d.ts

@@ -10,9 +10,9 @@ export declare class BigWigFeature {
     get(key: string): string | number | boolean | undefined;
     id(): string;
     toJSON(): {
-        start: number | undefined;
-        end: number | undefined;
-        score: number | undefined;
+        start: number;
+        end: number;
+        score: number;
         refName: string;
         source: string;
         uniqueId: string;
@@ -32,14 +32,15 @@ export declare class ArrayFeatureView {
     readonly refName: string;
     constructor(arrays: BigWigFeatureArrays | SummaryFeatureArrays, source: string, refName: string);
     get length(): number;
-    start(i: number): number | undefined;
-    end(i: number): number | undefined;
-    score(i: number): number | undefined;
+    start(i: number): number;
+    end(i: number): number;
+    score(i: number): number;
     minScore(i: number): number | undefined;
     maxScore(i: number): number | undefined;
     id(i: number): string;
     get(i: number, key: 'refName' | 'source'): string;
-    get(i: number, key: 'start' | 'end' | 'score' | 'minScore' | 'maxScore'): number | undefined;
+    get(i: number, key: 'start' | 'end' | 'score'): number;
+    get(i: number, key: 'minScore' | 'maxScore'): number | undefined;
     get(i: number, key: 'summary'): boolean;
     get(i: number, key: string): string | number | boolean | undefined;
 }

package/dist/array-feature-view.js.map

@@ -1 +1 @@
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+{"version":3,"file":"array-feature-view.js","sourceRoot":"","sources":["../src/array-feature-view.ts"],"names":[],"mappings":";;;AAEA,MAAa,aAAa;IAEd;IACA;IAFV,YACU,IAAsB,EACtB,CAAS;QADT,SAAI,GAAJ,IAAI,CAAkB;QACtB,MAAC,GAAD,CAAC,CAAQ;IAChB,CAAC;IAOJ,GAAG,CAAC,GAAW;QACb,OAAO,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,EAAE,GAAG,CAAC,CAAA;IACnC,CAAC;IAED,EAAE;QACA,OAAO,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;IAC7B,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,IAAI,EAAE,CAAC,EAAE,GAAG,IAAI,CAAA;QACxB,OAAO;YACL,KAAK,EAAE,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC;YACpB,GAAG,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;YAChB,KAAK,EAAE,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC;YACpB,OAAO,EAAE,IAAI,CAAC,OAAO;YACrB,MAAM,EAAE,IAAI,CAAC,MAAM;YACnB,QAAQ,EAAE,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC;YACpB,OAAO,EAAE,IAAI,CAAC,SAAS;YACvB,QAAQ,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC;YAC1B,QAAQ,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC;SAC3B,CAAA;IACH,CAAC;CACF;AAjCD,sCAiCC;AAED,MAAa,gBAAgB;IACX,MAAM,CAAY;IAClB,IAAI,CAAY;IAChB,MAAM,CAAc;IACpB,SAAS,CAA0B;IACnC,SAAS,CAA0B;IACnC,SAAS,CAAS;IAClB,MAAM,CAAQ;IACd,OAAO,CAAQ;IAE/B,YACE,MAAkD,EAClD,MAAc,EACd,OAAe;QAEf,IAAI,CAAC,MAAM,GAAG,MAAM,CAAC,MAAM,CAAA;QAC3B,IAAI,CAAC,IAAI,GAAG,MAAM,CAAC,IAAI,CAAA;QACvB,IAAI,CAAC,MAAM,GAAG,MAAM,CAAC,MAAM,CAAA;QAC3B,IAAI,CAAC,SAAS,GAAG,MAAM,CAAC,SAAS,CAAA;QACjC,IAAI,CAAC,SAAS,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,SAAS,CAAA;QAChE,IAAI,CAAC,SAAS,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,SAAS,CAAA;QAChE,IAAI,CAAC,MAAM,GAAG,MAAM,CAAA;QACpB,IAAI,CAAC,OAAO,GAAG,OAAO,CAAA;IACxB,CAAC;IAED,IAAI,MAAM;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,MAAM,CAAA;IAC3B,CAAC;IAED,KAAK,CAAC,CAAS;QACb,OAAO,IAAI,CAAC,MAAM,CAAC,CAAC,CAAE,CAAA;IACxB,CAAC;IAED,GAAG,CAAC,CAAS;QACX,OAAO,IAAI,CAAC,IAAI,CAAC,CAAC,CAAE,CAAA;IACtB,CAAC;IAED,KAAK,CAAC,CAAS;QACb,OAAO,IAAI,CAAC,MAAM,CAAC,CAAC,CAAE,CAAA;IACxB,CAAC;IAED,QAAQ,CAAC,CAAS;QAChB,OAAO,IAAI,CAAC,SAAS,EAAE,CAAC,CAAC,CAAC,CAAA;IAC5B,CAAC;IAED,QAAQ,CAAC,CAAS;QAChB,OAAO,IAAI,CAAC,SAAS,EAAE,CAAC,CAAC,CAAC,CAAA;IAC5B,CAAC;IAED,EAAE,CAAC,CAAS;QACV,OAAO,GAAG,IAAI,CAAC,MAAM,IAAI,IAAI,CAAC,OAAO,IAAI,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,IAAI,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAA;IAC3E,CAAC;IAQD,GAAG,CAAC,CAAS,EAAE,GAAW;QACxB,QAAQ,GAAG,EAAE,CAAC;YACZ,KAAK,OAAO;gBACV,OAAO,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CAAA;YACvB,KAAK,KAAK;gBACR,OAAO,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;YACrB,KAAK,OAAO;gBACV,OAAO,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CAAA;YACvB,KAAK,SAAS;gBACZ,OAAO,IAAI,CAAC,OAAO,CAAA;YACrB,KAAK,QAAQ;gBACX,OAAO,IAAI,CAAC,MAAM,CAAA;YACpB,KAAK,UAAU;gBACb,OAAO,IAAI,CAAC,SAAS,EAAE,CAAC,CAAC,CAAC,CAAA;YAC5B,KAAK,UAAU;gBACb,OAAO,IAAI,CAAC,SAAS,EAAE,CAAC,CAAC,CAAC,CAAA;YAC5B,KAAK,SAAS;gBACZ,OAAO,IAAI,CAAC,SAAS,CAAA;YACvB;gBACE,OAAO,SAAS,CAAA;QACpB,CAAC;IACH,CAAC;CACF;AAjFD,4CAiFC"}

package/dist/unzip.d.ts

@@ -9,9 +9,19 @@ export declare function unzipBatch(data: Uint8Array, blocks: {
 export declare function decompressAndParseBigWigBlocks(data: Uint8Array, blocks: {
     offset: number;
     length: number;
-}[], maxOutputSize: number, reqStart: number, reqEnd: number): Promise<import("./wasm/inflate-wasm-inlined.js").BigWigFeatureArrays>;
+}[], maxOutputSize: number, reqStart: number, reqEnd: number): Promise<{
+    starts: Int32Array<any>;
+    ends: Int32Array<any>;
+    scores: Float32Array<any>;
+}>;
 export declare function decompressAndParseSummaryBlocks(data: Uint8Array, blocks: {
     offset: number;
     length: number;
-}[], maxOutputSize: number, reqChrId: number, reqStart: number, reqEnd: number): Promise<import("./wasm/inflate-wasm-inlined.js").SummaryFeatureArrays>;
+}[], maxOutputSize: number, reqChrId: number, reqStart: number, reqEnd: number): Promise<{
+    starts: Int32Array<any>;
+    ends: Int32Array<any>;
+    scores: Float32Array<any>;
+    minScores: Float32Array<any>;
+    maxScores: Float32Array<any>;
+}>;
 export type { BigWigFeatureArrays, SummaryFeatureArrays } from './types.ts';

package/dist/unzip.js

@@ -3,7 +3,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.unzipBatch = unzipBatch;
 exports.decompressAndParseBigWigBlocks = decompressAndParseBigWigBlocks;
 exports.decompressAndParseSummaryBlocks = decompressAndParseSummaryBlocks;
-const inflate_wasm_inlined_js_1 = require("./wasm/inflate-wasm-inlined.js");
+const inflate_wasm_inlined_mjs_1 = require("./wasm/inflate-wasm-inlined.mjs");
 function blocksToTypedArrays(blocks) {
     const inputOffsets = new Uint32Array(blocks.length);
     const inputLengths = new Uint32Array(blocks.length);
@@ -16,14 +16,14 @@ function blocksToTypedArrays(blocks) {
 }
 async function unzipBatch(data, blocks, maxOutputSize) {
     const { inputOffsets, inputLengths } = blocksToTypedArrays(blocks);
-    return (0, inflate_wasm_inlined_js_1.inflateRawBatch)(data, inputOffsets, inputLengths, maxOutputSize);
+    return (0, inflate_wasm_inlined_mjs_1.inflateRawBatch)(data, inputOffsets, inputLengths, maxOutputSize);
 }
 async function decompressAndParseBigWigBlocks(data, blocks, maxOutputSize, reqStart, reqEnd) {
     const { inputOffsets, inputLengths } = blocksToTypedArrays(blocks);
-    return (0, inflate_wasm_inlined_js_1.decompressAndParseBigWig)(data, inputOffsets, inputLengths, maxOutputSize, reqStart, reqEnd);
+    return (0, inflate_wasm_inlined_mjs_1.decompressAndParseBigWig)(data, inputOffsets, inputLengths, maxOutputSize, reqStart, reqEnd);
 }
 async function decompressAndParseSummaryBlocks(data, blocks, maxOutputSize, reqChrId, reqStart, reqEnd) {
     const { inputOffsets, inputLengths } = blocksToTypedArrays(blocks);
-    return (0, inflate_wasm_inlined_js_1.decompressAndParseSummary)(data, inputOffsets, inputLengths, maxOutputSize, reqChrId, reqStart, reqEnd);
+    return (0, inflate_wasm_inlined_mjs_1.decompressAndParseSummary)(data, inputOffsets, inputLengths, maxOutputSize, reqChrId, reqStart, reqEnd);
 }
 //# sourceMappingURL=unzip.js.map

package/dist/unzip.js.map

@@ -1 +1 @@
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+{"version":3,"file":"unzip.js","sourceRoot":"","sources":["../src/unzip.ts"],"names":[],"mappings":";;AAsBA,gCAOC;AAED,wEAgBC;AAED,0EAkBC;AAnED,8EAIwC;AAOxC,SAAS,mBAAmB,CAAC,MAA4C;IACvE,MAAM,YAAY,GAAG,IAAI,WAAW,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;IACnD,MAAM,YAAY,GAAG,IAAI,WAAW,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;IACnD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACvC,MAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAE,CAAA;QACxB,YAAY,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,MAAM,CAAA;QAC9B,YAAY,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,MAAM,CAAA;IAChC,CAAC;IACD,OAAO,EAAE,YAAY,EAAE,YAAY,EAAE,CAAA;AACvC,CAAC;AAEM,KAAK,UAAU,UAAU,CAC9B,IAAgB,EAChB,MAA4C,EAC5C,aAAqB;IAErB,MAAM,EAAE,YAAY,EAAE,YAAY,EAAE,GAAG,mBAAmB,CAAC,MAAM,CAAC,CAAA;IAClE,OAAO,IAAA,0CAAe,EAAC,IAAI,EAAE,YAAY,EAAE,YAAY,EAAE,aAAa,CAAC,CAAA;AACzE,CAAC;AAEM,KAAK,UAAU,8BAA8B,CAClD,IAAgB,EAChB,MAA4C,EAC5C,aAAqB,EACrB,QAAgB,EAChB,MAAc;IAEd,MAAM,EAAE,YAAY,EAAE,YAAY,EAAE,GAAG,mBAAmB,CAAC,MAAM,CAAC,CAAA;IAClE,OAAO,IAAA,mDAAwB,EAC7B,IAAI,EACJ,YAAY,EACZ,YAAY,EACZ,aAAa,EACb,QAAQ,EACR,MAAM,CACP,CAAA;AACH,CAAC;AAEM,KAAK,UAAU,+BAA+B,CACnD,IAAgB,EAChB,MAA4C,EAC5C,aAAqB,EACrB,QAAgB,EAChB,QAAgB,EAChB,MAAc;IAEd,MAAM,EAAE,YAAY,EAAE,YAAY,EAAE,GAAG,mBAAmB,CAAC,MAAM,CAAC,CAAA;IAClE,OAAO,IAAA,oDAAyB,EAC9B,IAAI,EACJ,YAAY,EACZ,YAAY,EACZ,aAAa,EACb,QAAQ,EACR,QAAQ,EACR,MAAM,CACP,CAAA;AACH,CAAC"}

package/dist/wasm/inflate-wasm-inlined.d.mts

@@ -0,0 +1,18 @@
+export function decompressAndParseBigWig(inputs: any, inputOffsets: any, inputLengths: any, maxBlockSize: any, reqStart: any, reqEnd: any): Promise<{
+    starts: Int32Array<any>;
+    ends: Int32Array<any>;
+    scores: Float32Array<any>;
+}>;
+export function decompressAndParseSummary(inputs: any, inputOffsets: any, inputLengths: any, maxBlockSize: any, reqChrId: any, reqStart: any, reqEnd: any): Promise<{
+    starts: Int32Array<any>;
+    ends: Int32Array<any>;
+    scores: Float32Array<any>;
+    minScores: Float32Array<any>;
+    maxScores: Float32Array<any>;
+}>;
+export function inflateRaw(input: any, outputSize: any): Promise<Uint8Array<ArrayBufferLike>>;
+export function inflateRawBatch(inputs: any, inputOffsets: any, inputLengths: any, maxOutputSize: any): Promise<{
+    data: Uint8Array<ArrayBufferLike>;
+    offsets: any[];
+}>;
+export function inflateRawUnknownSize(input: any): Promise<Uint8Array<ArrayBufferLike>>;