@gmod/bbi 9.0.11 → 9.0.12

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Files changed (14) hide show
  1. package/dist/array-feature-view.d.ts +8 -7
  2. package/dist/array-feature-view.js.map +1 -1
  3. package/dist/unzip.d.ts +2 -2
  4. package/dist/wasm/inflate-wasm-inlined.d.ts +21 -0
  5. package/dist/wasm/inflate-wasm-inlined.js +526 -0
  6. package/dist/wasm/package.json +1 -0
  7. package/esm/array-feature-view.d.ts +8 -7
  8. package/esm/array-feature-view.js.map +1 -1
  9. package/esm/unzip.d.ts +2 -2
  10. package/esm/wasm/inflate-wasm-inlined.d.ts +21 -0
  11. package/esm/wasm/inflate-wasm-inlined.js +526 -0
  12. package/package.json +7 -4
  13. package/src/array-feature-view.ts +10 -12
  14. package/src/wasm/inflate-wasm-inlined.d.ts +4 -4
package/esm/array-feature-view.d.ts CHANGED
@@ -10,9 +10,9 @@ export declare class BigWigFeature {
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  get(key: string): string | number | boolean | undefined;
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  id(): string;
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  toJSON(): {
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- start: number | undefined;
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- end: number | undefined;
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- score: number | undefined;
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+ start: number;
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+ end: number;
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+ score: number;
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  refName: string;
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  source: string;
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  uniqueId: string;
@@ -32,14 +32,15 @@ export declare class ArrayFeatureView {
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  readonly refName: string;
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  constructor(arrays: BigWigFeatureArrays | SummaryFeatureArrays, source: string, refName: string);
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  get length(): number;
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- start(i: number): number | undefined;
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- end(i: number): number | undefined;
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- score(i: number): number | undefined;
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+ start(i: number): number;
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+ end(i: number): number;
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+ score(i: number): number;
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  minScore(i: number): number | undefined;
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  maxScore(i: number): number | undefined;
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  id(i: number): string;
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  get(i: number, key: 'refName' | 'source'): string;
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- get(i: number, key: 'start' | 'end' | 'score' | 'minScore' | 'maxScore'): number | undefined;
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+ get(i: number, key: 'start' | 'end' | 'score'): number;
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+ get(i: number, key: 'minScore' | 'maxScore'): number | undefined;
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  get(i: number, key: 'summary'): boolean;
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  get(i: number, key: string): string | number | boolean | undefined;
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  }
package/esm/array-feature-view.js.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"array-feature-view.js","sourceRoot":"","sources":["../src/array-feature-view.ts"],"names":[],"mappings":"AAEA,MAAM,OAAO,aAAa;IAEd;IACA;IAFV,YACU,IAAsB,EACtB,CAAS;QADT,SAAI,GAAJ,IAAI,CAAkB;QACtB,MAAC,GAAD,CAAC,CAAQ;IAChB,CAAC;IAOJ,GAAG,CAAC,GAAW;QACb,OAAO,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,EAAE,GAAG,CAAC,CAAA;IACnC,CAAC;IAED,EAAE;QACA,OAAO,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;IAC7B,CAAC;IAED,MAAM;QACJ,MAAM,EAAE,IAAI,EAAE,CAAC,EAAE,GAAG,IAAI,CAAA;QACxB,OAAO;YACL,KAAK,EAAE,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC;YACpB,GAAG,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;YAChB,KAAK,EAAE,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC;YACpB,OAAO,EAAE,IAAI,CAAC,OAAO;YACrB,MAAM,EAAE,IAAI,CAAC,MAAM;YACnB,QAAQ,EAAE,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC;YACpB,OAAO,EAAE,IAAI,CAAC,SAAS;YACvB,QAAQ,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC;YAC1B,QAAQ,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC;SAC3B,CAAA;IACH,CAAC;CACF;AAED,MAAM,OAAO,gBAAgB;IACX,MAAM,CAAY;IAClB,IAAI,CAAY;IAChB,MAAM,CAAc;IACpB,SAAS,CAA0B;IACnC,SAAS,CAA0B;IACnC,SAAS,CAAS;IAClB,MAAM,CAAQ;IACd,OAAO,CAAQ;IAE/B,YACE,MAAkD,EAClD,MAAc,EACd,OAAe;QAEf,IAAI,CAAC,MAAM,GAAG,MAAM,CAAC,MAAM,CAAA;QAC3B,IAAI,CAAC,IAAI,GAAG,MAAM,CAAC,IAAI,CAAA;QACvB,IAAI,CAAC,MAAM,GAAG,MAAM,CAAC,MAAM,CAAA;QAC3B,IAAI,CAAC,SAAS,GAAG,MAAM,CAAC,SAAS,CAAA;QACjC,IAAI,CAAC,SAAS,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,SAAS,CAAA;QAChE,IAAI,CAAC,SAAS,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,SAAS,CAAA;QAChE,IAAI,CAAC,MAAM,GAAG,MAAM,CAAA;QACpB,IAAI,CAAC,OAAO,GAAG,OAAO,CAAA;IACxB,CAAC;IAED,IAAI,MAAM;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,MAAM,CAAA;IAC3B,CAAC;IAED,KAAK,CAAC,CAAS;QACb,OAAO,IAAI,CAAC,MAAM,CAAC,CAAC,CAAE,CAAA;IACxB,CAAC;IAED,GAAG,CAAC,CAAS;QACX,OAAO,IAAI,CAAC,IAAI,CAAC,CAAC,CAAE,CAAA;IACtB,CAAC;IAED,KAAK,CAAC,CAAS;QACb,OAAO,IAAI,CAAC,MAAM,CAAC,CAAC,CAAE,CAAA;IACxB,CAAC;IAED,QAAQ,CAAC,CAAS;QAChB,OAAO,IAAI,CAAC,SAAS,EAAE,CAAC,CAAC,CAAC,CAAA;IAC5B,CAAC;IAED,QAAQ,CAAC,CAAS;QAChB,OAAO,IAAI,CAAC,SAAS,EAAE,CAAC,CAAC,CAAC,CAAA;IAC5B,CAAC;IAED,EAAE,CAAC,CAAS;QACV,OAAO,GAAG,IAAI,CAAC,MAAM,IAAI,IAAI,CAAC,OAAO,IAAI,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,IAAI,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAA;IAC3E,CAAC;IAQD,GAAG,CAAC,CAAS,EAAE,GAAW;QACxB,QAAQ,GAAG,EAAE,CAAC;YACZ,KAAK,OAAO;gBACV,OAAO,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CAAA;YACvB,KAAK,KAAK;gBACR,OAAO,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;YACrB,KAAK,OAAO;gBACV,OAAO,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CAAA;YACvB,KAAK,SAAS;gBACZ,OAAO,IAAI,CAAC,OAAO,CAAA;YACrB,KAAK,QAAQ;gBACX,OAAO,IAAI,CAAC,MAAM,CAAA;YACpB,KAAK,UAAU;gBACb,OAAO,IAAI,CAAC,SAAS,EAAE,CAAC,CAAC,CAAC,CAAA;YAC5B,KAAK,UAAU;gBACb,OAAO,IAAI,CAAC,SAAS,EAAE,CAAC,CAAC,CAAC,CAAA;YAC5B,KAAK,SAAS;gBACZ,OAAO,IAAI,CAAC,SAAS,CAAA;YACvB;gBACE,OAAO,SAAS,CAAA;QACpB,CAAC;IACH,CAAC;CACF"}
package/esm/unzip.d.ts CHANGED
@@ -9,9 +9,9 @@ export declare function unzipBatch(data: Uint8Array, blocks: {
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  export declare function decompressAndParseBigWigBlocks(data: Uint8Array, blocks: {
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  offset: number;
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  length: number;
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- }[], maxOutputSize: number, reqStart: number, reqEnd: number): Promise<import("./wasm/inflate-wasm-inlined.js").BigWigFeatureArrays>;
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+ }[], maxOutputSize: number, reqStart: number, reqEnd: number): Promise<import("./wasm/inflate-wasm-inlined.js").WasmBigWigArrays>;
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  export declare function decompressAndParseSummaryBlocks(data: Uint8Array, blocks: {
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  offset: number;
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  length: number;
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- }[], maxOutputSize: number, reqChrId: number, reqStart: number, reqEnd: number): Promise<import("./wasm/inflate-wasm-inlined.js").SummaryFeatureArrays>;
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+ }[], maxOutputSize: number, reqChrId: number, reqStart: number, reqEnd: number): Promise<import("./wasm/inflate-wasm-inlined.js").WasmSummaryArrays>;
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  export type { BigWigFeatureArrays, SummaryFeatureArrays } from './types.ts';
package/esm/wasm/inflate-wasm-inlined.d.ts ADDED
@@ -0,0 +1,21 @@
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+ export interface BatchResult {
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+ data: Uint8Array;
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+ offsets: number[];
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+ }
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+ export interface WasmBigWigArrays {
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+ starts: Int32Array;
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+ ends: Int32Array;
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+ scores: Float32Array;
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+ }
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+ export interface WasmSummaryArrays {
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+ starts: Int32Array;
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+ ends: Int32Array;
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+ scores: Float32Array;
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+ minScores: Float32Array;
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+ maxScores: Float32Array;
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+ }
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+ export declare function inflateRaw(input: Uint8Array, outputSize: number): Promise<Uint8Array>;
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+ export declare function inflateRawUnknownSize(input: Uint8Array): Promise<Uint8Array>;
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+ export declare function inflateRawBatch(inputs: Uint8Array, inputOffsets: Uint32Array, inputLengths: Uint32Array, maxOutputSize: number): Promise<BatchResult>;
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+ export declare function decompressAndParseBigWig(inputs: Uint8Array, inputOffsets: Uint32Array, inputLengths: Uint32Array, maxBlockSize: number, reqStart: number, reqEnd: number): Promise<WasmBigWigArrays>;
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+ export declare function decompressAndParseSummary(inputs: Uint8Array, inputOffsets: Uint32Array, inputLengths: Uint32Array, maxBlockSize: number, reqChrId: number, reqStart: number, reqEnd: number): Promise<WasmSummaryArrays>;