@gmod/bbi 8.1.2 → 9.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (61) hide show
  1. package/CHANGELOG.md +2 -0
  2. package/README.md +0 -24
  3. package/dist/array-feature-view.js.map +1 -1
  4. package/dist/bbi.d.ts +5 -25
  5. package/dist/bbi.js +31 -133
  6. package/dist/bbi.js.map +1 -1
  7. package/dist/bigbed.d.ts +0 -1
  8. package/dist/bigbed.js +19 -51
  9. package/dist/bigbed.js.map +1 -1
  10. package/dist/bigwig.d.ts +1 -2
  11. package/dist/bigwig.js +1 -2
  12. package/dist/bigwig.js.map +1 -1
  13. package/dist/block-view.d.ts +7 -16
  14. package/dist/block-view.js +369 -443
  15. package/dist/block-view.js.map +1 -1
  16. package/dist/parse-bigwig.d.ts +2 -2
  17. package/dist/parse-bigwig.js +5 -5
  18. package/dist/parse-bigwig.js.map +1 -1
  19. package/dist/range.d.ts +1 -15
  20. package/dist/range.js +16 -49
  21. package/dist/range.js.map +1 -1
  22. package/dist/util.d.ts +0 -22
  23. package/dist/util.js +0 -46
  24. package/dist/util.js.map +1 -1
  25. package/dist/wasm/inflate-wasm-inlined.js +1 -1
  26. package/dist/wasm/inflate-wasm-inlined.js.map +1 -1
  27. package/esm/array-feature-view.js.map +1 -1
  28. package/esm/bbi.d.ts +5 -25
  29. package/esm/bbi.js +31 -133
  30. package/esm/bbi.js.map +1 -1
  31. package/esm/bigbed.d.ts +0 -1
  32. package/esm/bigbed.js +19 -50
  33. package/esm/bigbed.js.map +1 -1
  34. package/esm/bigwig.d.ts +1 -2
  35. package/esm/bigwig.js +1 -2
  36. package/esm/bigwig.js.map +1 -1
  37. package/esm/block-view.d.ts +7 -16
  38. package/esm/block-view.js +369 -443
  39. package/esm/block-view.js.map +1 -1
  40. package/esm/parse-bigwig.d.ts +2 -2
  41. package/esm/parse-bigwig.js +5 -5
  42. package/esm/parse-bigwig.js.map +1 -1
  43. package/esm/range.d.ts +1 -15
  44. package/esm/range.js +15 -48
  45. package/esm/range.js.map +1 -1
  46. package/esm/util.d.ts +0 -22
  47. package/esm/util.js +0 -42
  48. package/esm/util.js.map +1 -1
  49. package/esm/wasm/inflate-wasm-inlined.js +1 -1
  50. package/esm/wasm/inflate-wasm-inlined.js.map +1 -1
  51. package/package.json +3 -6
  52. package/src/array-feature-view.ts +4 -1
  53. package/src/bbi.ts +50 -153
  54. package/src/bigbed.ts +22 -55
  55. package/src/bigwig.ts +1 -3
  56. package/src/block-view.ts +525 -639
  57. package/src/parse-bigwig.ts +7 -9
  58. package/src/range.ts +19 -58
  59. package/src/util.ts +0 -46
  60. package/src/wasm/inflate-wasm-inlined.js +1 -1
  61. package/src/wasm/inflate_wasm_bg.wasm +0 -0
@@ -1,7 +1,6 @@
1
1
  import type { Feature } from './types.ts';
2
2
  import type { BigWigFeatureArrays, SummaryFeatureArrays } from './unzip.ts';
3
3
  import type { GenericFilehandle } from 'generic-filehandle2';
4
- import type { Observer } from 'rxjs';
5
4
  interface CoordRequest {
6
5
  chrId: number;
7
6
  start: number;
@@ -26,22 +25,14 @@ export declare class BlockView {
26
25
  private rTreePromise?;
27
26
  private featureCache;
28
27
  constructor(bbi: GenericFilehandle, refsByName: Record<string, number>, rTreeOffset: number, uncompressBufSize: number, blockType: string);
29
- readWigData(chrName: string, start: number, end: number, observer: Observer<Feature[]>, opts?: Options): Promise<void>;
30
- private parseSummaryBlock;
31
- private parseBigBedBlock;
32
- private parseBigWigBlock;
33
- private parseBigWigBlockAsArrays;
34
- readFeatures(observer: Observer<Feature[]>, blocks: {
28
+ private _collectBlocks;
29
+ readWigData(chrName: string, start: number, end: number, opts?: Options): Promise<Feature[]>;
30
+ readWigDataAsArrays(chrName: string, start: number, end: number, opts?: Options): Promise<BigWigFeatureArrays | SummaryFeatureArrays>;
31
+ readFeatures(blocks: {
35
32
  offset: number;
36
33
  length: number;
37
- }[], opts?: Options): Promise<void>;
38
- readBigWigFeaturesAsArrays(blocks: {
39
- offset: number;
40
- length: number;
41
- }[], opts?: Options): Promise<BigWigFeatureArrays>;
42
- readSummaryFeaturesAsArrays(blocks: {
43
- offset: number;
44
- length: number;
45
- }[], opts?: Options): Promise<SummaryFeatureArrays>;
34
+ }[], opts?: Options): Promise<Feature[]>;
35
+ private _readBigWigFeaturesAsArrays;
36
+ private _readSummaryFeaturesAsArrays;
46
37
  }
47
38
  export {};