@gmod/bbi 8.1.1 → 9.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +4 -0
- package/README.md +49 -53
- package/dist/array-feature-view.d.ts +4 -1
- package/dist/array-feature-view.js.map +1 -1
- package/dist/bbi.d.ts +5 -25
- package/dist/bbi.js +31 -133
- package/dist/bbi.js.map +1 -1
- package/dist/bigbed.d.ts +0 -1
- package/dist/bigbed.js +19 -51
- package/dist/bigbed.js.map +1 -1
- package/dist/bigwig.d.ts +1 -2
- package/dist/bigwig.js +1 -2
- package/dist/bigwig.js.map +1 -1
- package/dist/block-view.d.ts +7 -16
- package/dist/block-view.js +370 -440
- package/dist/block-view.js.map +1 -1
- package/dist/parse-bigwig.d.ts +2 -2
- package/dist/parse-bigwig.js +5 -5
- package/dist/parse-bigwig.js.map +1 -1
- package/dist/range.d.ts +1 -15
- package/dist/range.js +16 -49
- package/dist/range.js.map +1 -1
- package/dist/util.d.ts +0 -22
- package/dist/util.js +0 -46
- package/dist/util.js.map +1 -1
- package/dist/wasm/inflate-wasm-inlined.js +85 -86
- package/dist/wasm/inflate-wasm-inlined.js.map +1 -1
- package/dist/wasm/inflate_wasm.d.ts +1 -1
- package/dist/wasm/inflate_wasm.js +10 -4
- package/dist/wasm/inflate_wasm.js.map +1 -1
- package/dist/wasm/inflate_wasm_bg.d.ts +2 -2
- package/dist/wasm/inflate_wasm_bg.js +85 -86
- package/dist/wasm/inflate_wasm_bg.js.map +1 -1
- package/esm/array-feature-view.d.ts +4 -1
- package/esm/array-feature-view.js.map +1 -1
- package/esm/bbi.d.ts +5 -25
- package/esm/bbi.js +31 -133
- package/esm/bbi.js.map +1 -1
- package/esm/bigbed.d.ts +0 -1
- package/esm/bigbed.js +19 -50
- package/esm/bigbed.js.map +1 -1
- package/esm/bigwig.d.ts +1 -2
- package/esm/bigwig.js +1 -2
- package/esm/bigwig.js.map +1 -1
- package/esm/block-view.d.ts +7 -16
- package/esm/block-view.js +370 -440
- package/esm/block-view.js.map +1 -1
- package/esm/parse-bigwig.d.ts +2 -2
- package/esm/parse-bigwig.js +5 -5
- package/esm/parse-bigwig.js.map +1 -1
- package/esm/range.d.ts +1 -15
- package/esm/range.js +15 -48
- package/esm/range.js.map +1 -1
- package/esm/util.d.ts +0 -22
- package/esm/util.js +0 -42
- package/esm/util.js.map +1 -1
- package/esm/wasm/inflate-wasm-inlined.js +85 -86
- package/esm/wasm/inflate-wasm-inlined.js.map +1 -1
- package/esm/wasm/inflate_wasm.d.ts +1 -1
- package/esm/wasm/inflate_wasm.js +2 -1
- package/esm/wasm/inflate_wasm.js.map +1 -1
- package/esm/wasm/inflate_wasm_bg.d.ts +2 -2
- package/esm/wasm/inflate_wasm_bg.js +83 -84
- package/esm/wasm/inflate_wasm_bg.js.map +1 -1
- package/package.json +14 -16
- package/src/array-feature-view.ts +8 -0
- package/src/bbi.ts +50 -153
- package/src/bigbed.ts +22 -55
- package/src/bigwig.ts +1 -3
- package/src/block-view.ts +526 -634
- package/src/parse-bigwig.ts +7 -9
- package/src/range.ts +19 -58
- package/src/util.ts +0 -46
- package/src/wasm/inflate-wasm-inlined.js +101 -102
- package/src/wasm/inflate_wasm.js +7 -2
- package/src/wasm/inflate_wasm_bg.js +99 -100
- package/src/wasm/inflate_wasm_bg.wasm +0 -0
package/dist/bigbed.js.map
CHANGED
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@@ -1 +1 @@
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-
{"version":3,"file":"bigbed.js","sourceRoot":"","sources":["../src/bigbed.ts"],"names":[],"mappings":";;;;;;
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+
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package/dist/bigwig.d.ts
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import { BBI } from './bbi.ts';
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import { BlockView } from './block-view.ts';
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import type { RequestOptions } from './types.ts';
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export declare class BigWig extends BBI {
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/**
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* or scale used to infer the zoomLevel to use
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protected getView(scale: number, opts: RequestOptions): Promise<BlockView>;
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protected getView(scale: number, opts: RequestOptions): Promise<import("./block-view.ts").BlockView>;
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}
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package/dist/bigwig.js
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.BigWig = void 0;
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const bbi_ts_1 = require("./bbi.js");
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const block_view_ts_1 = require("./block-view.js");
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class BigWig extends bbi_ts_1.BBI {
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/**
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* Retrieves a BlockView of a specific zoomLevel
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const zh = zoomLevels[i];
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if (zh && zh.reductionLevel <= 2 * basesPerPx) {
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return
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return this.getOrCreateBlockView(refsByName, zh.indexOffset, uncompressBufSize, 'summary');
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}
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}
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return this.getUnzoomedView(opts);
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package/dist/bigwig.js.map
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{"version":3,"file":"bigwig.js","sourceRoot":"","sources":["../src/bigwig.ts"],"names":[],"mappings":";;;AAAA,qCAA8B;
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+
{"version":3,"file":"bigwig.js","sourceRoot":"","sources":["../src/bigwig.ts"],"names":[],"mappings":";;;AAAA,qCAA8B;AAI9B,MAAa,MAAO,SAAQ,YAAG;IAC7B;;;;;;;OAOG;IACO,KAAK,CAAC,OAAO,CAAC,KAAa,EAAE,IAAoB;QACzD,MAAM,EAAE,UAAU,EAAE,UAAU,EAAE,iBAAiB,EAAE,GACjD,MAAM,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,CAAA;QAC5B,MAAM,UAAU,GAAG,CAAC,GAAG,KAAK,CAAA;QAC5B,MAAM,QAAQ,GAAG,UAAU,CAAC,MAAM,GAAG,CAAC,CAAA;QAEtC,KAAK,IAAI,CAAC,GAAG,QAAQ,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;YACtC,MAAM,EAAE,GAAG,UAAU,CAAC,CAAC,CAAC,CAAA;YACxB,IAAI,EAAE,IAAI,EAAE,CAAC,cAAc,IAAI,CAAC,GAAG,UAAU,EAAE,CAAC;gBAC9C,OAAO,IAAI,CAAC,oBAAoB,CAC9B,UAAU,EACV,EAAE,CAAC,WAAW,EACd,iBAAiB,EACjB,SAAS,CACV,CAAA;YACH,CAAC;QACH,CAAC;QACD,OAAO,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,CAAA;IACnC,CAAC;CACF;AA5BD,wBA4BC"}
|
package/dist/block-view.d.ts
CHANGED
|
@@ -1,7 +1,6 @@
|
|
|
1
1
|
import type { Feature } from './types.ts';
|
|
2
2
|
import type { BigWigFeatureArrays, SummaryFeatureArrays } from './unzip.ts';
|
|
3
3
|
import type { GenericFilehandle } from 'generic-filehandle2';
|
|
4
|
-
import type { Observer } from 'rxjs';
|
|
5
4
|
interface CoordRequest {
|
|
6
5
|
chrId: number;
|
|
7
6
|
start: number;
|
|
@@ -26,22 +25,14 @@ export declare class BlockView {
|
|
|
26
25
|
private rTreePromise?;
|
|
27
26
|
private featureCache;
|
|
28
27
|
constructor(bbi: GenericFilehandle, refsByName: Record<string, number>, rTreeOffset: number, uncompressBufSize: number, blockType: string);
|
|
29
|
-
|
|
30
|
-
|
|
31
|
-
|
|
32
|
-
|
|
33
|
-
private parseBigWigBlockAsArrays;
|
|
34
|
-
readFeatures(observer: Observer<Feature[]>, blocks: {
|
|
28
|
+
private _collectBlocks;
|
|
29
|
+
readWigData(chrName: string, start: number, end: number, opts?: Options): Promise<Feature[]>;
|
|
30
|
+
readWigDataAsArrays(chrName: string, start: number, end: number, opts?: Options): Promise<BigWigFeatureArrays | SummaryFeatureArrays>;
|
|
31
|
+
readFeatures(blocks: {
|
|
35
32
|
offset: number;
|
|
36
33
|
length: number;
|
|
37
|
-
}[], opts?: Options): Promise<
|
|
38
|
-
|
|
39
|
-
|
|
40
|
-
length: number;
|
|
41
|
-
}[], opts?: Options): Promise<BigWigFeatureArrays>;
|
|
42
|
-
readSummaryFeaturesAsArrays(blocks: {
|
|
43
|
-
offset: number;
|
|
44
|
-
length: number;
|
|
45
|
-
}[], opts?: Options): Promise<SummaryFeatureArrays>;
|
|
34
|
+
}[], opts?: Options): Promise<Feature[]>;
|
|
35
|
+
private _readBigWigFeaturesAsArrays;
|
|
36
|
+
private _readSummaryFeaturesAsArrays;
|
|
46
37
|
}
|
|
47
38
|
export {};
|