@gmod/bbi 8.1.1 → 8.1.2

package/esm/wasm/inflate_wasm_bg.js

@@ -1,85 +1,3 @@
-let wasm;
-export function __wbg_set_wasm(val) {
-    wasm = val;
-}
-function addHeapObject(obj) {
-    if (heap_next === heap.length)
-        heap.push(heap.length + 1);
-    const idx = heap_next;
-    heap_next = heap[idx];
-    heap[idx] = obj;
-    return idx;
-}
-function dropObject(idx) {
-    if (idx < 132)
-        return;
-    heap[idx] = heap_next;
-    heap_next = idx;
-}
-function getArrayU8FromWasm0(ptr, len) {
-    ptr = ptr >>> 0;
-    return getUint8ArrayMemory0().subarray(ptr / 1, ptr / 1 + len);
-}
-let cachedDataViewMemory0 = null;
-function getDataViewMemory0() {
-    if (cachedDataViewMemory0 === null || cachedDataViewMemory0.buffer.detached === true || (cachedDataViewMemory0.buffer.detached === undefined && cachedDataViewMemory0.buffer !== wasm.memory.buffer)) {
-        cachedDataViewMemory0 = new DataView(wasm.memory.buffer);
-    }
-    return cachedDataViewMemory0;
-}
-function getStringFromWasm0(ptr, len) {
-    ptr = ptr >>> 0;
-    return decodeText(ptr, len);
-}
-let cachedUint32ArrayMemory0 = null;
-function getUint32ArrayMemory0() {
-    if (cachedUint32ArrayMemory0 === null || cachedUint32ArrayMemory0.byteLength === 0) {
-        cachedUint32ArrayMemory0 = new Uint32Array(wasm.memory.buffer);
-    }
-    return cachedUint32ArrayMemory0;
-}
-let cachedUint8ArrayMemory0 = null;
-function getUint8ArrayMemory0() {
-    if (cachedUint8ArrayMemory0 === null || cachedUint8ArrayMemory0.byteLength === 0) {
-        cachedUint8ArrayMemory0 = new Uint8Array(wasm.memory.buffer);
-    }
-    return cachedUint8ArrayMemory0;
-}
-function getObject(idx) { return heap[idx]; }
-let heap = new Array(128).fill(undefined);
-heap.push(undefined, null, true, false);
-let heap_next = heap.length;
-function passArray32ToWasm0(arg, malloc) {
-    const ptr = malloc(arg.length * 4, 4) >>> 0;
-    getUint32ArrayMemory0().set(arg, ptr / 4);
-    WASM_VECTOR_LEN = arg.length;
-    return ptr;
-}
-function passArray8ToWasm0(arg, malloc) {
-    const ptr = malloc(arg.length * 1, 1) >>> 0;
-    getUint8ArrayMemory0().set(arg, ptr / 1);
-    WASM_VECTOR_LEN = arg.length;
-    return ptr;
-}
-function takeObject(idx) {
-    const ret = getObject(idx);
-    dropObject(idx);
-    return ret;
-}
-let cachedTextDecoder = new TextDecoder('utf-8', { ignoreBOM: true, fatal: true });
-cachedTextDecoder.decode();
-const MAX_SAFARI_DECODE_BYTES = 2146435072;
-let numBytesDecoded = 0;
-function decodeText(ptr, len) {
-    numBytesDecoded += len;
-    if (numBytesDecoded >= MAX_SAFARI_DECODE_BYTES) {
-        cachedTextDecoder = new TextDecoder('utf-8', { ignoreBOM: true, fatal: true });
-        cachedTextDecoder.decode();
-        numBytesDecoded = len;
-    }
-    return cachedTextDecoder.decode(getUint8ArrayMemory0().subarray(ptr, ptr + len));
-}
-let WASM_VECTOR_LEN = 0;
 /**
  * Combined decompress + parse for BigWig blocks
  * Returns same format as parse_bigwig_block but handles multiple compressed blocks
@@ -288,9 +206,90 @@ export function parse_summary_block(data, req_chr_id, req_start, req_end) {
         wasm.__wbindgen_add_to_stack_pointer(16);
     }
 }
-export function __wbg_Error_52673b7de5a0ca89(arg0, arg1) {
+export function __wbg_Error_83742b46f01ce22d(arg0, arg1) {
     const ret = Error(getStringFromWasm0(arg0, arg1));
     return addHeapObject(ret);
 }
-;
+function addHeapObject(obj) {
+    if (heap_next === heap.length)
+        heap.push(heap.length + 1);
+    const idx = heap_next;
+    heap_next = heap[idx];
+    heap[idx] = obj;
+    return idx;
+}
+function dropObject(idx) {
+    if (idx < 1028)
+        return;
+    heap[idx] = heap_next;
+    heap_next = idx;
+}
+function getArrayU8FromWasm0(ptr, len) {
+    ptr = ptr >>> 0;
+    return getUint8ArrayMemory0().subarray(ptr / 1, ptr / 1 + len);
+}
+let cachedDataViewMemory0 = null;
+function getDataViewMemory0() {
+    if (cachedDataViewMemory0 === null || cachedDataViewMemory0.buffer.detached === true || (cachedDataViewMemory0.buffer.detached === undefined && cachedDataViewMemory0.buffer !== wasm.memory.buffer)) {
+        cachedDataViewMemory0 = new DataView(wasm.memory.buffer);
+    }
+    return cachedDataViewMemory0;
+}
+function getStringFromWasm0(ptr, len) {
+    ptr = ptr >>> 0;
+    return decodeText(ptr, len);
+}
+let cachedUint32ArrayMemory0 = null;
+function getUint32ArrayMemory0() {
+    if (cachedUint32ArrayMemory0 === null || cachedUint32ArrayMemory0.byteLength === 0) {
+        cachedUint32ArrayMemory0 = new Uint32Array(wasm.memory.buffer);
+    }
+    return cachedUint32ArrayMemory0;
+}
+let cachedUint8ArrayMemory0 = null;
+function getUint8ArrayMemory0() {
+    if (cachedUint8ArrayMemory0 === null || cachedUint8ArrayMemory0.byteLength === 0) {
+        cachedUint8ArrayMemory0 = new Uint8Array(wasm.memory.buffer);
+    }
+    return cachedUint8ArrayMemory0;
+}
+function getObject(idx) { return heap[idx]; }
+let heap = new Array(1024).fill(undefined);
+heap.push(undefined, null, true, false);
+let heap_next = heap.length;
+function passArray32ToWasm0(arg, malloc) {
+    const ptr = malloc(arg.length * 4, 4) >>> 0;
+    getUint32ArrayMemory0().set(arg, ptr / 4);
+    WASM_VECTOR_LEN = arg.length;
+    return ptr;
+}
+function passArray8ToWasm0(arg, malloc) {
+    const ptr = malloc(arg.length * 1, 1) >>> 0;
+    getUint8ArrayMemory0().set(arg, ptr / 1);
+    WASM_VECTOR_LEN = arg.length;
+    return ptr;
+}
+function takeObject(idx) {
+    const ret = getObject(idx);
+    dropObject(idx);
+    return ret;
+}
+let cachedTextDecoder = new TextDecoder('utf-8', { ignoreBOM: true, fatal: true });
+cachedTextDecoder.decode();
+const MAX_SAFARI_DECODE_BYTES = 2146435072;
+let numBytesDecoded = 0;
+function decodeText(ptr, len) {
+    numBytesDecoded += len;
+    if (numBytesDecoded >= MAX_SAFARI_DECODE_BYTES) {
+        cachedTextDecoder = new TextDecoder('utf-8', { ignoreBOM: true, fatal: true });
+        cachedTextDecoder.decode();
+        numBytesDecoded = len;
+    }
+    return cachedTextDecoder.decode(getUint8ArrayMemory0().subarray(ptr, ptr + len));
+}
+let WASM_VECTOR_LEN = 0;
+let wasm;
+export function __wbg_set_wasm(val) {
+    wasm = val;
+}
 //# sourceMappingURL=inflate_wasm_bg.js.map

package/esm/wasm/inflate_wasm_bg.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@gmod/bbi",
-  "version": "8.1.1",
+  "version": "8.1.2",
   "description": "Parser for BigWig/BigBed files",
   "license": "MIT",
   "repository": "GMOD/bbi-js",
@@ -56,23 +56,24 @@
     "rxjs": "^7.8.0"
   },
   "devDependencies": {
+    "@eslint/js": "^10.0.1",
     "@gmod/bed": "^2.1.2",
-    "@types/node": "^24.10.0",
-    "@typescript-eslint/eslint-plugin": "^8.50.0",
-    "@typescript-eslint/parser": "^8.50.0",
-    "@vitest/coverage-v8": "^4.0.16",
-    "canvas": "^3.2.0",
-    "eslint": "^9.39.2",
+    "@types/node": "^25.5.0",
+    "@typescript-eslint/eslint-plugin": "^8.57.1",
+    "@typescript-eslint/parser": "^8.57.1",
+    "@vitest/coverage-v8": "^4.1.0",
+    "canvas": "^3.2.1",
+    "eslint": "^10.0.3",
     "eslint-plugin-import": "^2.31.0",
-    "eslint-plugin-unicorn": "^62.0.0",
+    "eslint-plugin-unicorn": "^63.0.0",
     "prettier": "^3.7.4",
-    "rimraf": "^6.1.2",
+    "rimraf": "^6.1.3",
     "standard-changelog": "^7.0.1",
     "typescript": "^5.1.6",
-    "typescript-eslint": "^8.50.0",
-    "vitest": "^4.0.16",
-    "webpack": "^5.104.1",
-    "webpack-cli": "^6.0.1"
+    "typescript-eslint": "^8.57.1",
+    "vitest": "^4.1.0",
+    "webpack": "^5.105.4",
+    "webpack-cli": "^7.0.2"
   },
   "publishConfig": {
     "access": "public"

package/src/array-feature-view.ts

@@ -61,6 +61,11 @@ export class ArrayFeatureView {
     return `${this._source}:${this._refName}:${this.starts[i]}-${this.ends[i]}`
   }
 
+  get(i: number, key: 'refName' | 'source'): string
+  get(i: number, key: 'start' | 'end' | 'score' | 'minScore' | 'maxScore'): number | undefined
+  get(i: number, key: 'summary'): boolean
+
+  get(i: number, key: string): any
   get(i: number, key: string) {
     switch (key) {
       case 'start':

package/src/block-view.ts

@@ -15,6 +15,7 @@ import type { GenericFilehandle } from 'generic-filehandle2'
 import type { Observer } from 'rxjs'
 
 const decoder = new TextDecoder('utf8')
+const CIR_TREE_MAGIC = 0x2468ace0
 
 interface CoordRequest {
   chrId: number
@@ -93,7 +94,12 @@ export class BlockView {
         buffer.byteOffset,
         buffer.length,
       )
-      // Maximum number of children per R-tree node - used to calculate memory bounds
+      const magic = dataView.getUint32(0, true)
+      if (magic !== CIR_TREE_MAGIC) {
+        throw new Error(
+          `invalid cirTree magic: 0x${magic.toString(16)} (expected 0x${CIR_TREE_MAGIC.toString(16)}) at offset ${this.rTreeOffset}, file may be corrupt or unsupported`,
+        )
+      }
       const rTreeBlockSize = dataView.getUint32(4, true)
       const blocksToFetch: ReadData[] = []
       let outstanding = 0