@gmod/bbi 8.0.2 → 8.0.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +8 -0
- package/README.md +9 -3
- package/dist/bbi.js +10 -2
- package/dist/bbi.js.map +1 -1
- package/dist/bigbed.js +1 -1
- package/dist/bigbed.js.map +1 -1
- package/dist/block-view.js +14 -3
- package/dist/block-view.js.map +1 -1
- package/dist/types.d.ts +2 -0
- package/dist/unzip.d.ts +3 -3
- package/esm/bbi.js +10 -2
- package/esm/bbi.js.map +1 -1
- package/esm/bigbed.js +1 -1
- package/esm/bigbed.js.map +1 -1
- package/esm/block-view.js +14 -3
- package/esm/block-view.js.map +1 -1
- package/esm/types.d.ts +2 -0
- package/esm/unzip.d.ts +3 -3
- package/package.json +4 -4
- package/src/bbi.ts +10 -2
- package/src/bigbed.ts +1 -1
- package/src/block-view.ts +14 -3
- package/src/types.ts +2 -0
- package/src/unzip.ts +4 -4
- package/src/wasm/inflate-wasm-inlined.d.ts +9 -0
package/CHANGELOG.md
CHANGED
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@@ -1,3 +1,11 @@
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1
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## [8.0.4](https://github.com/GMOD/bbi-js/compare/v8.0.3...v8.0.4) (2025-12-17)
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## [8.0.3](https://github.com/GMOD/bbi-js/compare/v8.0.2...v8.0.3) (2025-12-16)
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## [8.0.2](https://github.com/GMOD/bbi-js/compare/v8.0.1...v8.0.2) (2025-12-16)
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package/README.md
CHANGED
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@@ -151,14 +151,14 @@ for (let i = 0; i < starts.length; i++) {
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console.log(`Feature at ${starts[i]}-${ends[i]} with score ${scores[i]}`)
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}
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// Check if it's summary data
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// Check if it's summary data using the isSummary discriminant
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const result = await bigwig.getFeaturesAsArrays('chr1', 0, 100000, {
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scale: 0.01,
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})
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if (
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if (result.isSummary) {
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// Summary data with min/max scores
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const { minScores, maxScores } = result
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for (let i = 0; i < starts.length; i++) {
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for (let i = 0; i < result.starts.length; i++) {
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console.log(`Range: ${minScores[i]} - ${maxScores[i]}`)
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}
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}
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@@ -171,6 +171,7 @@ interface BigWigFeatureArrays {
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starts: Int32Array
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ends: Int32Array
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scores: Float32Array
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isSummary: false
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}
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interface SummaryFeatureArrays {
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scores: Float32Array
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minScores: Float32Array
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maxScores: Float32Array
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isSummary: true
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}
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```
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The `isSummary` discriminant allows TypeScript to properly narrow the union
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type, making it easier to safely access `minScores` and `maxScores` only when
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they exist.
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### BigBed
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#### getFeatures(refName, start, end, opts)
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package/dist/bbi.js
CHANGED
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@@ -307,6 +307,7 @@ class BBI {
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starts: new Int32Array(0),
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ends: new Int32Array(0),
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scores: new Float32Array(0),
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isSummary: false,
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};
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}
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const hasSummary = features[0]?.summary === true;
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minScores[i] = f.minScore ?? 0;
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maxScores[i] = f.maxScore ?? 0;
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}
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return {
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return {
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starts,
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ends,
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scores,
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minScores,
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maxScores,
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isSummary: true,
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};
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}
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const starts = new Int32Array(count);
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const ends = new Int32Array(count);
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ends[i] = f.end;
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scores[i] = f.score ?? 0;
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}
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return { starts, ends, scores };
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return { starts, ends, scores, isSummary: false };
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}
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}
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exports.BBI = BBI;
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package/dist/bbi.js.map
CHANGED
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+
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|
package/dist/bigbed.js
CHANGED
|
@@ -6,7 +6,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
|
|
|
6
6
|
exports.BigBed = void 0;
|
|
7
7
|
exports.filterUndef = filterUndef;
|
|
8
8
|
const abortable_promise_cache_1 = __importDefault(require("@gmod/abortable-promise-cache"));
|
|
9
|
-
const quick_lru_1 = __importDefault(require("quick-lru"));
|
|
9
|
+
const quick_lru_1 = __importDefault(require("@jbrowse/quick-lru"));
|
|
10
10
|
const rxjs_1 = require("rxjs");
|
|
11
11
|
const operators_1 = require("rxjs/operators");
|
|
12
12
|
const bbi_ts_1 = require("./bbi.js");
|
package/dist/bigbed.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"bigbed.js","sourceRoot":"","sources":["../src/bigbed.ts"],"names":[],"mappings":";;;;;;AA0BA,kCAEC;AA5BD,4FAAiE;AACjE,
|
|
1
|
+
{"version":3,"file":"bigbed.js","sourceRoot":"","sources":["../src/bigbed.ts"],"names":[],"mappings":";;;;;;AA0BA,kCAEC;AA5BD,4FAAiE;AACjE,mEAAyC;AACzC,+BAAwD;AACxD,8CAA4C;AAE5C,qCAA8B;AAK9B,MAAM,OAAO,GAAG,IAAI,WAAW,CAAC,MAAM,CAAC,CAAA;AAgBvC,SAAgB,WAAW,CAAI,EAAqB;IAClD,OAAO,EAAE,CAAC,MAAM,CAAC,CAAC,CAAgB,EAAU,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;AACrD,CAAC;AAED,SAAS,WAAW,CAAC,GAAW,EAAE,UAAkB;IAClD,IAAI,UAAU,GAAG,CAAC,EAAE,CAAC;QACnB,OAAO,SAAS,CAAA;IAClB,CAAC;IACD,IAAI,KAAK,GAAG,CAAC,CAAA;IACb,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,EAAE,CAAC,EAAE,EAAE,CAAC;QACpC,KAAK,GAAG,GAAG,CAAC,OAAO,CAAC,IAAI,EAAE,KAAK,CAAC,CAAA;QAChC,IAAI,KAAK,KAAK,CAAC,CAAC,EAAE,CAAC;YACjB,OAAO,SAAS,CAAA;QAClB,CAAC;QACD,KAAK,EAAE,CAAA;IACT,CAAC;IACD,MAAM,GAAG,GAAG,GAAG,CAAC,OAAO,CAAC,IAAI,EAAE,KAAK,CAAC,CAAA;IACpC,OAAO,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,KAAK,EAAE,GAAG,CAAC,CAAA;AAC9D,CAAC;AAED,0DAA0D;AAC1D,SAAS,QAAQ,CAAC,MAAkB,EAAE,MAAc,EAAE,OAAe;IACnE,MAAM,MAAM,GAAG,MAAM,CAAC,OAAO,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;IACxC,MAAM,eAAe,GACnB,MAAM,KAAK,CAAC,CAAC,IAAI,MAAM,GAAG,MAAM,GAAG,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,GAAG,OAAO,CAAA;IACxE,OAAO,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,QAAQ,CAAC,MAAM,EAAE,eAAe,CAAC,CAAC,CAAA;AACjE,CAAC;AAED,yFAAyF;AACzF,0EAA0E;AAC1E,KAAK,UAAU,iBAAiB,CAC9B,GAAsB,EACtB,UAAkB,EAClB,SAAiB,EACjB,OAAe,EACf,OAAe,EACf,IAAY,EACZ,KAAa,EACb,IAAoB;IAEpB,MAAM,GAAG,GAAG,CAAC,GAAG,SAAS,GAAG,CAAC,OAAO,GAAG,OAAO,CAAC,CAAA;IAC/C,MAAM,MAAM,GAAG,MAAM,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,UAAU,EAAE,IAAI,CAAC,CAAA;IACpD,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,UAAU,EAAE,MAAM,CAAC,MAAM,CAAC,CAAA;IAC9E,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,MAAM,QAAQ,GAAG,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC,CAAA;IACzC,MAAM,IAAI,CAAC,CAAA,CAAC,uCAAuC;IACnD,MAAM,GAAG,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;IAC3C,MAAM,IAAI,CAAC,CAAA;IAEX,uFAAuF;IACvF,IAAI,QAAQ,KAAK,CAAC,EAAE,CAAC;QACnB,MAAM,QAAQ,GAAG,EAAE,CAAA;QACnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC;YAC7B,MAAM,GAAG,GAAG,QAAQ,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,CAAA;YAC7C,MAAM,IAAI,OAAO,CAAA;YACjB,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;YAC9D,MAAM,IAAI,CAAC,CAAA;YACX,QAAQ,CAAC,IAAI,CAAC;gBACZ,GAAG;gBACH,MAAM,EAAE,UAAU;aACnB,CAAC,CAAA;QACJ,CAAC;QAED,mDAAmD;QACnD,IAAI,IAAI,GAAG,CAAC,CAAA;QACZ,IAAI,KAAK,GAAG,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAA;QAC/B,IAAI,WAAW,GAAG,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAA;QAErC,OAAO,IAAI,IAAI,KAAK,EAAE,CAAC;YACrB,MAAM,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,IAAI,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAA;YAC1C,MAAM,GAAG,GAAG,IAAI,CAAC,aAAa,CAAC,QAAQ,CAAC,GAAG,CAAE,CAAC,GAAG,CAAC,CAAA;YAElD,IAAI,GAAG,GAAG,CAAC,EAAE,CAAC;gBACZ,WAAW,GAAG,GAAG,GAAG,CAAC,CAAA;gBACrB,KAAK,GAAG,GAAG,GAAG,CAAC,CAAA;YACjB,CAAC;iBAAM,CAAC;gBACN,IAAI,GAAG,GAAG,GAAG,CAAC,CAAA;YAChB,CAAC;QACH,CAAC;QAED,MAAM,WAAW,GACf,WAAW,IAAI,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,WAAW,CAAE,CAAC,MAAM,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAE,CAAC,MAAM,CAAA;QACxE,OAAO,iBAAiB,CACtB,GAAG,EACH,WAAW,EACX,SAAS,EACT,OAAO,EACP,OAAO,EACP,IAAI,EACJ,KAAK,EACL,IAAI,CACL,CAAA;IACH,CAAC;SAAM,IAAI,QAAQ,KAAK,CAAC,EAAE,CAAC;QAC1B,6DAA6D;QAC7D,MAAM,IAAI,GAAG,EAAE,CAAA;QACf,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC;YAC7B,MAAM,GAAG,GAAG,QAAQ,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,CAAA;YAC7C,MAAM,IAAI,OAAO,CAAA;YACjB,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;YAC9D,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,MAAM,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC/C,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,IAAI,CAAC,CAAA,CAAC,gBAAgB;YAC5B,IAAI,CAAC,IAAI,CAAC;gBACR,GAAG;gBACH,MAAM,EAAE,UAAU;gBAClB,MAAM;aACP,CAAC,CAAA;QACJ,CAAC;QAED,wDAAwD;QACxD,IAAI,IAAI,GAAG,CAAC,CAAA;QACZ,IAAI,KAAK,GAAG,IAAI,CAAC,MAAM,GAAG,CAAC,CAAA;QAE3B,OAAO,IAAI,IAAI,KAAK,EAAE,CAAC;YACrB,MAAM,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,IAAI,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAA;YAC1C,MAAM,GAAG,GAAG,IAAI,CAAC,aAAa,CAAC,IAAI,CAAC,GAAG,CAAE,CAAC,GAAG,CAAC,CAAA;YAE9C,IAAI,GAAG,KAAK,CAAC,EAAE,CAAC;gBACd,OAAO,EAAE,GAAG,IAAI,CAAC,GAAG,CAAE,EAAE,KAAK,EAAE,CAAA;YACjC,CAAC;iBAAM,IAAI,GAAG,GAAG,CAAC,EAAE,CAAC;gBACnB,KAAK,GAAG,GAAG,GAAG,CAAC,CAAA;YACjB,CAAC;iBAAM,CAAC;gBACN,IAAI,GAAG,GAAG,GAAG,CAAC,CAAA;YAChB,CAAC;QACH,CAAC;QAED,OAAO,SAAS,CAAA;IAClB,CAAC;AACH,CAAC;AAED,MAAa,MAAO,SAAQ,YAAG;IACtB,gBAAgB,GAAG,IAAI,iCAAqB,CAA0B;QAC3E,KAAK,EAAE,IAAI,mBAAQ,CAAC,EAAE,OAAO,EAAE,CAAC,EAAE,CAAC;QACnC,IAAI,EAAE,CAAC,IAAoB,EAAE,MAAoB,EAAE,EAAE,CACnD,IAAI,CAAC,YAAY,CAAC,EAAE,GAAG,IAAI,EAAE,MAAM,EAAE,CAAC;KACzC,CAAC,CAAA;IAEK,WAAW,CAAC,OAAuB,EAAE;QAC1C,MAAM,EAAE,MAAM,EAAE,GAAG,IAAI,EAAE,GAAG,IAAI,CAAA;QAChC,OAAO,IAAI,CAAC,gBAAgB,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,MAAM,CAAC,CAAA;IACtE,CAAC;IAED;;OAEG;IACO,KAAK,CAAC,OAAO,CAAC,MAAc,EAAE,IAAqB;QAC3D,OAAO,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,CAAA;IACnC,CAAC;IAED;;;;;;OAMG;IACK,KAAK,CAAC,YAAY,CAAC,IAAoB;QAC7C,MAAM,EAAE,eAAe,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,CAAA;QACtD,MAAM,CAAC,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,EAAE,eAAe,CAAC,CAAA;QAElD,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;QAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;QACd,iDAAiD;QACjD,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,KAAK,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QAC9C,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;QAC9D,MAAM,IAAI,CAAC,CAAA;QAEX,wCAAwC;QACxC,IAAI,KAAK,KAAK,CAAC,EAAE,CAAC;YAChB,OAAO,EAAE,CAAA;QACX,CAAC;QAED,MAAM,QAAQ,GAAG,EAAE,CAAA;QACnB,MAAM,GAAG,GAAG,QAAQ,GAAG,KAAK,CAAA;QAC5B,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,UAAU,CAAC,CAAA;QAEnD,MAAM,OAAO,GAAY,EAAE,CAAA;QAE3B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;YAClC,MAAM,CAAC,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC,GAAG,QAAQ,CAAC,CAAA;YACvC,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;YAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;YACd,MAAM,IAAI,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC5C,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,UAAU,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAClD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;YAC9D,MAAM,IAAI,CAAC,GAAG,CAAC,CAAA,CAAC,wCAAwC;YACxD,MAAM,KAAK,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC7C,OAAO,CAAC,IAAI,CAAC;gBACX,IAAI;gBACJ,UAAU;gBACV,MAAM,EAAE,UAAU;gBAClB,KAAK;aACN,CAAC,CAAA;QACJ,CAAC;QACD,OAAO,OAAO,CAAA;IAChB,CAAC;IAED;;;;;;;;;OASG;IACK,KAAK,CAAC,sBAAsB,CAClC,IAAY,EACZ,OAAuB,EAAE;QAEzB,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,WAAW,CAAC,IAAI,CAAC,CAAA;QAC5C,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,OAAO,EAAE,CAAA;QACX,CAAC;QACD,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,EAAC,KAAK,EAAC,EAAE;YACrC,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;YACxC,MAAM,CAAC,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,EAAE,OAAO,EAAE,IAAI,CAAC,CAAA;YAEhD,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;YAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;YACd,iDAAiD;YACjD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,SAAS,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YACjD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,OAAO,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC/C,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,OAAO,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC/C,MAAM,IAAI,CAAC,CAAA;YACX,iEAAiE;YACjE,MAAM,IAAI,CAAC,CAAA;YAEX,OAAO,iBAAiB,CACtB,IAAI,CAAC,GAAG,EACR,OAAO,GAAG,EAAE,EACZ,SAAS,EACT,OAAO,EACP,OAAO,EACP,IAAI,EACJ,KAAK,EACL,IAAI,CACL,CAAA;QACH,CAAC,CAAC,CAAA;QACF,OAAO,WAAW,CAAC,MAAM,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAA;IAC7C,CAAC;IAED;;;;;;;;;;OAUG;IACI,KAAK,CAAC,gBAAgB,CAAC,IAAY,EAAE,OAAuB,EAAE;QACnE,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,sBAAsB,CAAC,IAAI,EAAE,IAAI,CAAC,CAAA;QAC5D,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACxB,OAAO,EAAE,CAAA;QACX,CAAC;QACD,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,CAAA;QAC7C,MAAM,GAAG,GAAG,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE;YAC7B,OAAO,IAAI,iBAAU,CAAY,QAAQ,CAAC,EAAE;gBAC1C,IAAI,CAAC,YAAY,CAAC,QAAQ,EAAE,CAAC,KAAK,CAAC,EAAE,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAU,EAAE,EAAE;oBAC9D,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gBACnB,CAAC,CAAC,CAAA;YACJ,CAAC,CAAC,CAAC,IAAI,CACL,IAAA,kBAAM,EAAC,CAAC,GAAG,EAAE,IAAI,EAAE,EAAE;gBACnB,GAAG,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC,CAAA;gBACjB,OAAO,GAAG,CAAA;YACZ,CAAC,EAAE,EAAe,CAAC,EACnB,IAAA,eAAG,EAAC,QAAQ,CAAC,EAAE,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,KAAK,EAAE,KAAK,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,CACnE,CAAA;QACH,CAAC,CAAC,CAAA;QACF,MAAM,GAAG,GAAG,MAAM,IAAA,qBAAc,EAAC,IAAA,YAAK,EAAC,GAAG,GAAG,CAAC,CAAC,CAAA;QAC/C,qEAAqE;QACrE,oFAAoF;QACpF,OAAO,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE;YACpB,IAAI,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;gBACZ,OAAO,KAAK,CAAA;YACd,CAAC;YACD,MAAM,UAAU,GAAG,CAAC,CAAC,CAAC,KAAK,IAAI,CAAC,CAAC,GAAG,CAAC,CAAA;YACrC,OAAO,WAAW,CAAC,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,KAAK,IAAI,CAAA;QACjD,CAAC,CAAC,CAAA;IACJ,CAAC;CACF;AAjKD,wBAiKC"}
|
package/dist/block-view.js
CHANGED
|
@@ -5,7 +5,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
5
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
6
|
exports.BlockView = void 0;
|
|
7
7
|
const abortable_promise_cache_1 = __importDefault(require("@gmod/abortable-promise-cache"));
|
|
8
|
-
const quick_lru_1 = __importDefault(require("quick-lru"));
|
|
8
|
+
const quick_lru_1 = __importDefault(require("@jbrowse/quick-lru"));
|
|
9
9
|
const range_ts_1 = __importDefault(require("./range.js"));
|
|
10
10
|
const unzip_ts_1 = require("./unzip.js");
|
|
11
11
|
const util_ts_1 = require("./util.js");
|
|
@@ -537,6 +537,7 @@ class BlockView {
|
|
|
537
537
|
starts: new Int32Array(0),
|
|
538
538
|
ends: new Int32Array(0),
|
|
539
539
|
scores: new Float32Array(0),
|
|
540
|
+
isSummary: false,
|
|
540
541
|
};
|
|
541
542
|
}
|
|
542
543
|
if (allStarts.length === 1) {
|
|
@@ -544,6 +545,7 @@ class BlockView {
|
|
|
544
545
|
starts: allStarts[0],
|
|
545
546
|
ends: allEnds[0],
|
|
546
547
|
scores: allScores[0],
|
|
548
|
+
isSummary: false,
|
|
547
549
|
};
|
|
548
550
|
}
|
|
549
551
|
const starts = new Int32Array(totalCount);
|
|
@@ -556,7 +558,7 @@ class BlockView {
|
|
|
556
558
|
scores.set(allScores[i], offset);
|
|
557
559
|
offset += allStarts[i].length;
|
|
558
560
|
}
|
|
559
|
-
return { starts, ends, scores };
|
|
561
|
+
return { starts, ends, scores, isSummary: false };
|
|
560
562
|
}
|
|
561
563
|
async readSummaryFeaturesAsArrays(blocks, opts = {}) {
|
|
562
564
|
const { uncompressBufSize } = this;
|
|
@@ -621,6 +623,7 @@ class BlockView {
|
|
|
621
623
|
scores: new Float32Array(0),
|
|
622
624
|
minScores: new Float32Array(0),
|
|
623
625
|
maxScores: new Float32Array(0),
|
|
626
|
+
isSummary: true,
|
|
624
627
|
};
|
|
625
628
|
}
|
|
626
629
|
if (allStarts.length === 1) {
|
|
@@ -630,6 +633,7 @@ class BlockView {
|
|
|
630
633
|
scores: allScores[0],
|
|
631
634
|
minScores: allMinScores[0],
|
|
632
635
|
maxScores: allMaxScores[0],
|
|
636
|
+
isSummary: true,
|
|
633
637
|
};
|
|
634
638
|
}
|
|
635
639
|
const starts = new Int32Array(totalCount);
|
|
@@ -646,7 +650,14 @@ class BlockView {
|
|
|
646
650
|
maxScores.set(allMaxScores[i], offset);
|
|
647
651
|
offset += allStarts[i].length;
|
|
648
652
|
}
|
|
649
|
-
return {
|
|
653
|
+
return {
|
|
654
|
+
starts,
|
|
655
|
+
ends,
|
|
656
|
+
scores,
|
|
657
|
+
minScores,
|
|
658
|
+
maxScores,
|
|
659
|
+
isSummary: true,
|
|
660
|
+
};
|
|
650
661
|
}
|
|
651
662
|
}
|
|
652
663
|
exports.BlockView = BlockView;
|
package/dist/block-view.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
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1
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C,IAAI,CAAC,CAAA;wBACzB,SAAS,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;wBAC7B,UAAU,IAAI,MAAM,CAAC,MAAM,CAAC,MAAM,CAAA;oBACpC,CAAC;gBACH,CAAC;YACH,CAAC;QACH,CAAC,CAAC,CACH,CAAA;QAED,IAAI,SAAS,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC3B,OAAO;gBACL,MAAM,EAAE,IAAI,UAAU,CAAC,CAAC,CAAC;gBACzB,IAAI,EAAE,IAAI,UAAU,CAAC,CAAC,CAAC;gBACvB,MAAM,EAAE,IAAI,YAAY,CAAC,CAAC,CAAC;gBAC3B,SAAS,EAAE,KAAc;aAC1B,CAAA;QACH,CAAC;QAED,IAAI,SAAS,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC3B,OAAO;gBACL,MAAM,EAAE,SAAS,CAAC,CAAC,CAAE;gBACrB,IAAI,EAAE,OAAO,CAAC,CAAC,CAAE;gBACjB,MAAM,EAAE,SAAS,CAAC,CAAC,CAAE;gBACrB,SAAS,EAAE,KAAc;aAC1B,CAAA;QACH,CAAC;QAED,MAAM,MAAM,GAAG,IAAI,UAAU,CAAC,UAAU,CAAC,CAAA;QACzC,MAAM,IAAI,GAAG,IAAI,UAAU,CAAC,UAAU,CAAC,CAAA;QACvC,MAAM,MAAM,GAAG,IAAI,YAAY,CAAC,UAAU,CAAC,CAAA;QAC3C,IAAI,MAAM,GAAG,CAAC,CAAA;QACd,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;YAC1C,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC,CAAE,EAAE,MAAM,CAAC,CAAA;YACjC,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAE,EAAE,MAAM,CAAC,CAAA;YAC7B,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC,CAAE,EAAE,MAAM,CAAC,CAAA;YACjC,MAAM,IAAI,SAAS,CAAC,CAAC,CAAE,CAAC,MAAM,CAAA;QAChC,CAAC;QAED,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,SAAS,EAAE,KAAc,EAAE,CAAA;IAC5D,CAAC;IAEM,KAAK,CAAC,2BAA2B,CACtC,MAA4C,EAC5C,OAAgB,EAAE;QAElB,MAAM,EAAE,iBAAiB,EAAE,GAAG,IAAI,CAAA;QAClC,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,GAAG,IAAI,CAAA;QAChC,MAAM,kBAAkB,GAAG,IAAA,qBAAW,EAAC,MAAM,CAAC,CAAA;QAE9C,MAAM,SAAS,GAAiB,EAAE,CAAA;QAClC,MAAM,OAAO,GAAiB,EAAE,CAAA;QAChC,MAAM,SAAS,GAAmB,EAAE,CAAA;QACpC,MAAM,YAAY,GAAmB,EAAE,CAAA;QACvC,MAAM,YAAY,GAAmB,EAAE,CAAA;QACvC,IAAI,UAAU,GAAG,CAAC,CAAA;QAElB,MAAM,OAAO,CAAC,GAAG,CACf,kBAAkB,CAAC,GAAG,CAAC,KAAK,EAAC,UAAU,EAAC,EAAE;YACxC,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,GAAG,UAAU,CAAA;YACrC,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,YAAY,CAAC,GAAG,CACtC,GAAG,MAAM,IAAI,MAAM,EAAE,EACrB,UAAU,EACV,MAAM,CACP,CAAA;YAED,MAAM,WAAW,GAAG,UAAU,CAAC,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;gBAClD,MAAM,EAAE,KAAK,CAAC,MAAM,GAAG,UAAU,CAAC,MAAM;gBACxC,MAAM,EAAE,KAAK,CAAC,MAAM;aACrB,CAAC,CAAC,CAAA;YAEH,IAAI,iBAAiB,GAAG,CAAC,EAAE,CAAC;gBAC1B,MAAM,MAAM,GAAG,MAAM,IAAA,0CAA+B,EAClD,IAAI,EACJ,WAAW,EACX,iBAAiB,EACjB,OAAO,EAAE,KAAK,IAAI,CAAC,EACnB,OAAO,EAAE,KAAK,IAAI,CAAC,EACnB,OAAO,EAAE,GAAG,IAAI,CAAC,CAClB,CAAA;gBACD,IAAI,MAAM,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;oBAC7B,SAAS,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;oBAC7B,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;oBACzB,SAAS,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;oBAC7B,YAAY,CAAC,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,CAAA;oBACnC,YAAY,CAAC,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,CAAA;oBACnC,UAAU,IAAI,MAAM,CAAC,MAAM,CAAC,MAAM,CAAA;gBACpC,CAAC;YACH,CAAC;iBAAM,CAAC;gBACN,KAAK,MAAM,KAAK,IAAI,WAAW,EAAE,CAAC;oBAChC,MAAM,SAAS,GAAG,IAAI,CAAC,QAAQ,CAC7B,KAAK,CAAC,MAAM,EACZ,KAAK,CAAC,MAAM,GAAG,KAAK,CAAC,MAAM,CAC5B,CAAA;oBACD,MAAM,QAAQ,GAAG,IAAI,CAAC,iBAAiB,CAAC,SAAS,EAAE,CAAC,EAAE,OAAO,CAAC,CAAA;oBAC9D,IAAI,QAAQ,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;wBACxB,MAAM,MAAM,GAAG,IAAI,UAAU,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;wBAC9C,MAAM,IAAI,GAAG,IAAI,UAAU,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;wBAC5C,MAAM,MAAM,GAAG,IAAI,YAAY,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;wBAChD,MAAM,SAAS,GAAG,IAAI,YAAY,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;wBACnD,MAAM,SAAS,GAAG,IAAI,YAAY,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;wBACnD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;4BACzC,MAAM,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAE,CAAA;4BACtB,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,KAAK,CAAA;4BACnB,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAA;4BACf,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,KAAK,IAAI,CAAC,CAAA;4BACxB,SAAS,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAA;4BAC9B,SAAS,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAA;wBAChC,CAAC;wBACD,SAAS,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA;wBACtB,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;wBAClB,SAAS,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA;wBACtB,YAAY,CAAC,IAAI,CAAC,SAAS,CAAC,CAAA;wBAC5B,YAAY,CAAC,IAAI,CAAC,SAAS,CAAC,CAAA;wBAC5B,UAAU,IAAI,QAAQ,CAAC,MAAM,CAAA;oBAC/B,CAAC;gBACH,CAAC;YACH,CAAC;QACH,CAAC,CAAC,CACH,CAAA;QAED,IAAI,SAAS,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC3B,OAAO;gBACL,MAAM,EAAE,IAAI,UAAU,CAAC,CAAC,CAAC;gBACzB,IAAI,EAAE,IAAI,UAAU,CAAC,CAAC,CAAC;gBACvB,MAAM,EAAE,IAAI,YAAY,CAAC,CAAC,CAAC;gBAC3B,SAAS,EAAE,IAAI,YAAY,CAAC,CAAC,CAAC;gBAC9B,SAAS,EAAE,IAAI,YAAY,CAAC,CAAC,CAAC;gBAC9B,SAAS,EAAE,IAAa;aACzB,CAAA;QACH,CAAC;QAED,IAAI,SAAS,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC3B,OAAO;gBACL,MAAM,EAAE,SAAS,CAAC,CAAC,CAAE;gBACrB,IAAI,EAAE,OAAO,CAAC,CAAC,CAAE;gBACjB,MAAM,EAAE,SAAS,CAAC,CAAC,CAAE;gBACrB,SAAS,EAAE,YAAY,CAAC,CAAC,CAAE;gBAC3B,SAAS,EAAE,YAAY,CAAC,CAAC,CAAE;gBAC3B,SAAS,EAAE,IAAa;aACzB,CAAA;QACH,CAAC;QAED,MAAM,MAAM,GAAG,IAAI,UAAU,CAAC,UAAU,CAAC,CAAA;QACzC,MAAM,IAAI,GAAG,IAAI,UAAU,CAAC,UAAU,CAAC,CAAA;QACvC,MAAM,MAAM,GAAG,IAAI,YAAY,CAAC,UAAU,CAAC,CAAA;QAC3C,MAAM,SAAS,GAAG,IAAI,YAAY,CAAC,UAAU,CAAC,CAAA;QAC9C,MAAM,SAAS,GAAG,IAAI,YAAY,CAAC,UAAU,CAAC,CAAA;QAC9C,IAAI,MAAM,GAAG,CAAC,CAAA;QACd,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;YAC1C,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC,CAAE,EAAE,MAAM,CAAC,CAAA;YACjC,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAE,EAAE,MAAM,CAAC,CAAA;YAC7B,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC,CAAE,EAAE,MAAM,CAAC,CAAA;YACjC,SAAS,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,CAAE,EAAE,MAAM,CAAC,CAAA;YACvC,SAAS,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,CAAE,EAAE,MAAM,CAAC,CAAA;YACvC,MAAM,IAAI,SAAS,CAAC,CAAC,CAAE,CAAC,MAAM,CAAA;QAChC,CAAC;QAED,OAAO;YACL,MAAM;YACN,IAAI;YACJ,MAAM;YACN,SAAS;YACT,SAAS;YACT,SAAS,EAAE,IAAa;SACzB,CAAA;IACH,CAAC;CACF;AA1yBD,8BA0yBC"}
|
package/dist/types.d.ts
CHANGED
|
@@ -63,6 +63,7 @@ export interface BigWigFeatureArrays {
|
|
|
63
63
|
starts: Int32Array;
|
|
64
64
|
ends: Int32Array;
|
|
65
65
|
scores: Float32Array;
|
|
66
|
+
isSummary: false;
|
|
66
67
|
}
|
|
67
68
|
export interface SummaryFeatureArrays {
|
|
68
69
|
starts: Int32Array;
|
|
@@ -70,4 +71,5 @@ export interface SummaryFeatureArrays {
|
|
|
70
71
|
scores: Float32Array;
|
|
71
72
|
minScores: Float32Array;
|
|
72
73
|
maxScores: Float32Array;
|
|
74
|
+
isSummary: true;
|
|
73
75
|
}
|
package/dist/unzip.d.ts
CHANGED
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import type { BigWigFeatureArrays, SummaryFeatureArrays } from './wasm/inflate-wasm-inlined.js';
|
|
1
|
+
import type { BigWigFeatureArrays as WasmBigWigFeatureArrays, SummaryFeatureArrays as WasmSummaryFeatureArrays } from './wasm/inflate-wasm-inlined.js';
|
|
2
2
|
export interface UnzipBatchResult {
|
|
3
3
|
data: Uint8Array;
|
|
4
4
|
offsets: number[];
|
|
@@ -10,9 +10,9 @@ export declare function unzipBatch(data: Uint8Array, blocks: {
|
|
|
10
10
|
export declare function decompressAndParseBigWigBlocks(data: Uint8Array, blocks: {
|
|
11
11
|
offset: number;
|
|
12
12
|
length: number;
|
|
13
|
-
}[], maxOutputSize: number, reqStart: number, reqEnd: number): Promise<
|
|
13
|
+
}[], maxOutputSize: number, reqStart: number, reqEnd: number): Promise<WasmBigWigFeatureArrays>;
|
|
14
14
|
export declare function decompressAndParseSummaryBlocks(data: Uint8Array, blocks: {
|
|
15
15
|
offset: number;
|
|
16
16
|
length: number;
|
|
17
|
-
}[], maxOutputSize: number, reqChrId: number, reqStart: number, reqEnd: number): Promise<
|
|
17
|
+
}[], maxOutputSize: number, reqChrId: number, reqStart: number, reqEnd: number): Promise<WasmSummaryFeatureArrays>;
|
|
18
18
|
export type { BigWigFeatureArrays, SummaryFeatureArrays } from './types.ts';
|
package/esm/bbi.js
CHANGED
|
@@ -304,6 +304,7 @@ export class BBI {
|
|
|
304
304
|
starts: new Int32Array(0),
|
|
305
305
|
ends: new Int32Array(0),
|
|
306
306
|
scores: new Float32Array(0),
|
|
307
|
+
isSummary: false,
|
|
307
308
|
};
|
|
308
309
|
}
|
|
309
310
|
const hasSummary = features[0]?.summary === true;
|
|
@@ -321,7 +322,14 @@ export class BBI {
|
|
|
321
322
|
minScores[i] = f.minScore ?? 0;
|
|
322
323
|
maxScores[i] = f.maxScore ?? 0;
|
|
323
324
|
}
|
|
324
|
-
return {
|
|
325
|
+
return {
|
|
326
|
+
starts,
|
|
327
|
+
ends,
|
|
328
|
+
scores,
|
|
329
|
+
minScores,
|
|
330
|
+
maxScores,
|
|
331
|
+
isSummary: true,
|
|
332
|
+
};
|
|
325
333
|
}
|
|
326
334
|
const starts = new Int32Array(count);
|
|
327
335
|
const ends = new Int32Array(count);
|
|
@@ -332,7 +340,7 @@ export class BBI {
|
|
|
332
340
|
ends[i] = f.end;
|
|
333
341
|
scores[i] = f.score ?? 0;
|
|
334
342
|
}
|
|
335
|
-
return { starts, ends, scores };
|
|
343
|
+
return { starts, ends, scores, isSummary: false };
|
|
336
344
|
}
|
|
337
345
|
}
|
|
338
346
|
//# sourceMappingURL=bbi.js.map
|
package/esm/bbi.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
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+
{"version":3,"file":"bbi.js","sourceRoot":"","sources":["../src/bbi.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,qBAAqB,CAAA;AAC3D,OAAO,EAAE,UAAU,EAAE,cAAc,EAAE,MAAM,MAAM,CAAA;AACjD,OAAO,EAAE,OAAO,EAAE,MAAM,gBAAgB,CAAA;AAExC,OAAO,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAA;AAgB3C,MAAM,aAAa,GAAG,CAAC,UAAU,CAAA;AACjC,MAAM,aAAa,GAAG,CAAC,UAAU,CAAA;AAEjC,MAAM,OAAO,GAAG,IAAI,WAAW,CAAC,MAAM,CAAC,CAAA;AAEvC,SAAS,WAAW,CAAC,MAAkB;IACrC,OAAO,IAAI,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,UAAU,EAAE,MAAM,CAAC,MAAM,CAAC,CAAA;AACtE,CAAC;AAED,MAAM,OAAgB,GAAG;IACb,GAAG,CAAmB;IAExB,OAAO,CAAoC;IAEzC,aAAa,CAAuB;IAEvC,SAAS,CAAC,IAAqB;QACpC,IAAI,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC;YAClB,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAU,EAAE,EAAE;gBACxD,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;gBACxB,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;QACJ,CAAC;QACD,OAAO,IAAI,CAAC,OAAO,CAAA;IACrB,CAAC;IAED;;;;;;;;;OASG;IACH,YAAmB,IAKlB;QACC,MAAM,EAAE,UAAU,EAAE,aAAa,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,IAAI,EAAE,GAAG,EAAE,GAAG,IAAI,CAAA;QAC9D,IAAI,CAAC,aAAa,GAAG,aAAa,CAAA;QAClC,IAAI,UAAU,EAAE,CAAC;YACf,IAAI,CAAC,GAAG,GAAG,UAAU,CAAA;QACvB,CAAC;aAAM,IAAI,GAAG,EAAE,CAAC;YACf,IAAI,CAAC,GAAG,GAAG,IAAI,UAAU,CAAC,GAAG,CAAC,CAAA;QAChC,CAAC;aAAM,IAAI,IAAI,EAAE,CAAC;YAChB,IAAI,CAAC,GAAG,GAAG,IAAI,SAAS,CAAC,IAAI,CAAC,CAAA;QAChC,CAAC;aAAM,CAAC;YACN,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;QAClC,CAAC;IACH,CAAC;IAEO,KAAK,CAAC,UAAU,CAAC,IAAqB;QAC5C,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,cAAc,CAAC,IAAI,CAAC,CAAA;QAC9C,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,mBAAmB,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QAC3D,OAAO;YACL,GAAG,MAAM;YACT,GAAG,MAAM;SACV,CAAA;IACH,CAAC;IAEO,KAAK,CAAC,cAAc,CAC1B,IAAqB,EACrB,WAAW,GAAG,IAAI;QAElB,MAAM,CAAC,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,WAAW,EAAE,CAAC,EAAE,IAAI,CAAC,CAAA;QACnD,MAAM,QAAQ,GAAG,WAAW,CAAC,CAAC,CAAC,CAAA;QAE/B,MAAM,EAAE,GAAG,QAAQ,CAAC,QAAQ,CAAC,CAAC,EAAE,IAAI,CAAC,CAAA;QACrC,IAAI,EAAE,KAAK,aAAa,IAAI,EAAE,KAAK,aAAa,EAAE,CAAC;YACjD,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;QAC7C,CAAC;QACD,IAAI,MAAM,GAAG,CAAC,CAAA;QACd,MAAM,KAAK,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QAC7C,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,OAAO,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QAChD,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,aAAa,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QACtD,MAAM,IAAI,CAAC,CAAA;QACX,kEAAkE;QAClE,MAAM,oBAAoB,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;QACxE,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,kBAAkB,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;QACtE,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,mBAAmB,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;QACvE,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,UAAU,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QACnD,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,iBAAiB,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QAC1D,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,QAAQ,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;QAC5D,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,kBAAkB,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;QACtE,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,iBAAiB,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QAC1D,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,eAAe,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;QACnE,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,UAAU,GAAG,EAAiB,CAAA;QACpC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,aAAa,EAAE,CAAC,EAAE,EAAE,CAAC;YACvC,MAAM,cAAc,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YACvD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,QAAQ,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YACjD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;YAC9D,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,WAAW,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;YAC/D,MAAM,IAAI,CAAC,CAAA;YACX,UAAU,CAAC,IAAI,CAAC;gBACd,cAAc;gBACd,QAAQ;gBACR,UAAU;gBACV,WAAW;aACZ,CAAC,CAAA;QACJ,CAAC;QAED,MAAM,QAAQ,GAAG,KAAK,KAAK,aAAa,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAA;QAE9D,mDAAmD;QACnD,4CAA4C;QAC5C,IAAI,QAAQ,GAAG,WAAW,IAAI,kBAAkB,GAAG,WAAW,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC;YACvE,OAAO,IAAI,CAAC,cAAc,CAAC,IAAI,EAAE,WAAW,GAAG,CAAC,CAAC,CAAA;QACnD,CAAC;QAED,IAAI,YAAwB,CAAA;QAC5B,IAAI,kBAAkB,EAAE,CAAC;YACvB,MAAM,EAAE,GAAG,CAAC,CAAC,QAAQ,CAAC,kBAAkB,CAAC,CAAA;YACzC,IAAI,MAAM,GAAG,CAAC,CAAA;YACd,MAAM,QAAQ,GAAG,WAAW,CAAC,EAAE,CAAC,CAAA;YAChC,MAAM,YAAY,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;YAChE,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,QAAQ,GAAG,QAAQ,CAAC,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAClD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,QAAQ,GAAG,QAAQ,CAAC,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAClD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,QAAQ,GAAG,QAAQ,CAAC,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAClD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,eAAe,GAAG,QAAQ,CAAC,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YACzD,MAAM,IAAI,CAAC,CAAA;YAEX,YAAY,GAAG;gBACb,QAAQ;gBACR,QAAQ;gBACR,QAAQ;gBACR,eAAe;gBACf,YAAY;aACb,CAAA;QACH,CAAC;aAAM,CAAC;YACN,MAAM,IAAI,KAAK,CAAC,UAAU,CAAC,CAAA;QAC7B,CAAC;QAED,OAAO;YACL,UAAU;YACV,KAAK;YACL,eAAe;YACf,aAAa;YACb,UAAU;YACV,YAAY;YACZ,iBAAiB;YACjB,iBAAiB;YACjB,QAAQ;YACR,oBAAoB;Y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|
package/esm/bigbed.js
CHANGED
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
import AbortablePromiseCache from '@gmod/abortable-promise-cache';
|
|
2
|
-
import QuickLRU from 'quick-lru';
|
|
2
|
+
import QuickLRU from '@jbrowse/quick-lru';
|
|
3
3
|
import { Observable, firstValueFrom, merge } from 'rxjs';
|
|
4
4
|
import { map, reduce } from 'rxjs/operators';
|
|
5
5
|
import { BBI } from "./bbi.js";
|
package/esm/bigbed.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"bigbed.js","sourceRoot":"","sources":["../src/bigbed.ts"],"names":[],"mappings":"AAAA,OAAO,qBAAqB,MAAM,+BAA+B,CAAA;AACjE,OAAO,QAAQ,MAAM,
|
|
1
|
+
{"version":3,"file":"bigbed.js","sourceRoot":"","sources":["../src/bigbed.ts"],"names":[],"mappings":"AAAA,OAAO,qBAAqB,MAAM,+BAA+B,CAAA;AACjE,OAAO,QAAQ,MAAM,oBAAoB,CAAA;AACzC,OAAO,EAAE,UAAU,EAAE,cAAc,EAAE,KAAK,EAAE,MAAM,MAAM,CAAA;AACxD,OAAO,EAAE,GAAG,EAAE,MAAM,EAAE,MAAM,gBAAgB,CAAA;AAE5C,OAAO,EAAE,GAAG,EAAE,MAAM,UAAU,CAAA;AAK9B,MAAM,OAAO,GAAG,IAAI,WAAW,CAAC,MAAM,CAAC,CAAA;AAgBvC,MAAM,UAAU,WAAW,CAAI,EAAqB;IAClD,OAAO,EAAE,CAAC,MAAM,CAAC,CAAC,CAAgB,EAAU,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;AACrD,CAAC;AAED,SAAS,WAAW,CAAC,GAAW,EAAE,UAAkB;IAClD,IAAI,UAAU,GAAG,CAAC,EAAE,CAAC;QACnB,OAAO,SAAS,CAAA;IAClB,CAAC;IACD,IAAI,KAAK,GAAG,CAAC,CAAA;IACb,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,EAAE,CAAC,EAAE,EAAE,CAAC;QACpC,KAAK,GAAG,GAAG,CAAC,OAAO,CAAC,IAAI,EAAE,KAAK,CAAC,CAAA;QAChC,IAAI,KAAK,KAAK,CAAC,CAAC,EAAE,CAAC;YACjB,OAAO,SAAS,CAAA;QAClB,CAAC;QACD,KAAK,EAAE,CAAA;IACT,CAAC;IACD,MAAM,GAAG,GAAG,GAAG,CAAC,OAAO,CAAC,IAAI,EAAE,KAAK,CAAC,CAAA;IACpC,OAAO,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,KAAK,EAAE,GAAG,CAAC,CAAA;AAC9D,CAAC;AAED,0DAA0D;AAC1D,SAAS,QAAQ,CAAC,MAAkB,EAAE,MAAc,EAAE,OAAe;IACnE,MAAM,MAAM,GAAG,MAAM,CAAC,OAAO,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;IACxC,MAAM,eAAe,GACnB,MAAM,KAAK,CAAC,CAAC,IAAI,MAAM,GAAG,MAAM,GAAG,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,GAAG,OAAO,CAAA;IACxE,OAAO,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,QAAQ,CAAC,MAAM,EAAE,eAAe,CAAC,CAAC,CAAA;AACjE,CAAC;AAED,yFAAyF;AACzF,0EAA0E;AAC1E,KAAK,UAAU,iBAAiB,CAC9B,GAAsB,EACtB,UAAkB,EAClB,SAAiB,EACjB,OAAe,EACf,OAAe,EACf,IAAY,EACZ,KAAa,EACb,IAAoB;IAEpB,MAAM,GAAG,GAAG,CAAC,GAAG,SAAS,GAAG,CAAC,OAAO,GAAG,OAAO,CAAC,CAAA;IAC/C,MAAM,MAAM,GAAG,MAAM,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,UAAU,EAAE,IAAI,CAAC,CAAA;IACpD,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,UAAU,EAAE,MAAM,CAAC,MAAM,CAAC,CAAA;IAC9E,IAAI,MAAM,GAAG,CAAC,CAAA;IACd,MAAM,QAAQ,GAAG,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC,CAAA;IACzC,MAAM,IAAI,CAAC,CAAA,CAAC,uCAAuC;IACnD,MAAM,GAAG,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;IAC3C,MAAM,IAAI,CAAC,CAAA;IAEX,uFAAuF;IACvF,IAAI,QAAQ,KAAK,CAAC,EAAE,CAAC;QACnB,MAAM,QAAQ,GAAG,EAAE,CAAA;QACnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC;YAC7B,MAAM,GAAG,GAAG,QAAQ,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,CAAA;YAC7C,MAAM,IAAI,OAAO,CAAA;YACjB,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;YAC9D,MAAM,IAAI,CAAC,CAAA;YACX,QAAQ,CAAC,IAAI,CAAC;gBACZ,GAAG;gBACH,MAAM,EAAE,UAAU;aACnB,CAAC,CAAA;QACJ,CAAC;QAED,mDAAmD;QACnD,IAAI,IAAI,GAAG,CAAC,CAAA;QACZ,IAAI,KAAK,GAAG,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAA;QAC/B,IAAI,WAAW,GAAG,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAA;QAErC,OAAO,IAAI,IAAI,KAAK,EAAE,CAAC;YACrB,MAAM,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,IAAI,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAA;YAC1C,MAAM,GAAG,GAAG,IAAI,CAAC,aAAa,CAAC,QAAQ,CAAC,GAAG,CAAE,CAAC,GAAG,CAAC,CAAA;YAElD,IAAI,GAAG,GAAG,CAAC,EAAE,CAAC;gBACZ,WAAW,GAAG,GAAG,GAAG,CAAC,CAAA;gBACrB,KAAK,GAAG,GAAG,GAAG,CAAC,CAAA;YACjB,CAAC;iBAAM,CAAC;gBACN,IAAI,GAAG,GAAG,GAAG,CAAC,CAAA;YAChB,CAAC;QACH,CAAC;QAED,MAAM,WAAW,GACf,WAAW,IAAI,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,WAAW,CAAE,CAAC,MAAM,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAE,CAAC,MAAM,CAAA;QACxE,OAAO,iBAAiB,CACtB,GAAG,EACH,WAAW,EACX,SAAS,EACT,OAAO,EACP,OAAO,EACP,IAAI,EACJ,KAAK,EACL,IAAI,CACL,CAAA;IACH,CAAC;SAAM,IAAI,QAAQ,KAAK,CAAC,EAAE,CAAC;QAC1B,6DAA6D;QAC7D,MAAM,IAAI,GAAG,EAAE,CAAA;QACf,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC;YAC7B,MAAM,GAAG,GAAG,QAAQ,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,CAAA;YAC7C,MAAM,IAAI,OAAO,CAAA;YACjB,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;YAC9D,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,MAAM,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC/C,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,IAAI,CAAC,CAAA,CAAC,gBAAgB;YAC5B,IAAI,CAAC,IAAI,CAAC;gBACR,GAAG;gBACH,MAAM,EAAE,UAAU;gBAClB,MAAM;aACP,CAAC,CAAA;QACJ,CAAC;QAED,wDAAwD;QACxD,IAAI,IAAI,GAAG,CAAC,CAAA;QACZ,IAAI,KAAK,GAAG,IAAI,CAAC,MAAM,GAAG,CAAC,CAAA;QAE3B,OAAO,IAAI,IAAI,KAAK,EAAE,CAAC;YACrB,MAAM,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,IAAI,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAA;YAC1C,MAAM,GAAG,GAAG,IAAI,CAAC,aAAa,CAAC,IAAI,CAAC,GAAG,CAAE,CAAC,GAAG,CAAC,CAAA;YAE9C,IAAI,GAAG,KAAK,CAAC,EAAE,CAAC;gBACd,OAAO,EAAE,GAAG,IAAI,CAAC,GAAG,CAAE,EAAE,KAAK,EAAE,CAAA;YACjC,CAAC;iBAAM,IAAI,GAAG,GAAG,CAAC,EAAE,CAAC;gBACnB,KAAK,GAAG,GAAG,GAAG,CAAC,CAAA;YACjB,CAAC;iBAAM,CAAC;gBACN,IAAI,GAAG,GAAG,GAAG,CAAC,CAAA;YAChB,CAAC;QACH,CAAC;QAED,OAAO,SAAS,CAAA;IAClB,CAAC;AACH,CAAC;AAED,MAAM,OAAO,MAAO,SAAQ,GAAG;IACtB,gBAAgB,GAAG,IAAI,qBAAqB,CAA0B;QAC3E,KAAK,EAAE,IAAI,QAAQ,CAAC,EAAE,OAAO,EAAE,CAAC,EAAE,CAAC;QACnC,IAAI,EAAE,CAAC,IAAoB,EAAE,MAAoB,EAAE,EAAE,CACnD,IAAI,CAAC,YAAY,CAAC,EAAE,GAAG,IAAI,EAAE,MAAM,EAAE,CAAC;KACzC,CAAC,CAAA;IAEK,WAAW,CAAC,OAAuB,EAAE;QAC1C,MAAM,EAAE,MAAM,EAAE,GAAG,IAAI,EAAE,GAAG,IAAI,CAAA;QAChC,OAAO,IAAI,CAAC,gBAAgB,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,MAAM,CAAC,CAAA;IACtE,CAAC;IAED;;OAEG;IACO,KAAK,CAAC,OAAO,CAAC,MAAc,EAAE,IAAqB;QAC3D,OAAO,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,CAAA;IACnC,CAAC;IAED;;;;;;OAMG;IACK,KAAK,CAAC,YAAY,CAAC,IAAoB;QAC7C,MAAM,EAAE,eAAe,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,CAAA;QACtD,MAAM,CAAC,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,EAAE,eAAe,CAAC,CAAA;QAElD,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;QAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;QACd,iDAAiD;QACjD,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,KAAK,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QAC9C,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;QAC9D,MAAM,IAAI,CAAC,CAAA;QAEX,wCAAwC;QACxC,IAAI,KAAK,KAAK,CAAC,EAAE,CAAC;YAChB,OAAO,EAAE,CAAA;QACX,CAAC;QAED,MAAM,QAAQ,GAAG,EAAE,CAAA;QACnB,MAAM,GAAG,GAAG,QAAQ,GAAG,KAAK,CAAA;QAC5B,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,UAAU,CAAC,CAAA;QAEnD,MAAM,OAAO,GAAY,EAAE,CAAA;QAE3B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;YAClC,MAAM,CAAC,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC,GAAG,QAAQ,CAAC,CAAA;YACvC,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;YAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;YACd,MAAM,IAAI,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC5C,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,UAAU,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAClD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;YAC9D,MAAM,IAAI,CAAC,GAAG,CAAC,CAAA,CAAC,wCAAwC;YACxD,MAAM,KAAK,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC7C,OAAO,CAAC,IAAI,CAAC;gBACX,IAAI;gBACJ,UAAU;gBACV,MAAM,EAAE,UAAU;gBAClB,KAAK;aACN,CAAC,CAAA;QACJ,CAAC;QACD,OAAO,OAAO,CAAA;IAChB,CAAC;IAED;;;;;;;;;OASG;IACK,KAAK,CAAC,sBAAsB,CAClC,IAAY,EACZ,OAAuB,EAAE;QAEzB,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,WAAW,CAAC,IAAI,CAAC,CAAA;QAC5C,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,OAAO,EAAE,CAAA;QACX,CAAC;QACD,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,EAAC,KAAK,EAAC,EAAE;YACrC,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;YACxC,MAAM,CAAC,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,EAAE,OAAO,EAAE,IAAI,CAAC,CAAA;YAEhD,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;YAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;YACd,iDAAiD;YACjD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,SAAS,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YACjD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,OAAO,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC/C,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,OAAO,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC/C,MAAM,IAAI,CAAC,CAAA;YACX,iEAAiE;YACjE,MAAM,IAAI,CAAC,CAAA;YAEX,OAAO,iBAAiB,CACtB,IAAI,CAAC,GAAG,EACR,OAAO,GAAG,EAAE,EACZ,SAAS,EACT,OAAO,EACP,OAAO,EACP,IAAI,EACJ,KAAK,EACL,IAAI,CACL,CAAA;QACH,CAAC,CAAC,CAAA;QACF,OAAO,WAAW,CAAC,MAAM,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAA;IAC7C,CAAC;IAED;;;;;;;;;;OAUG;IACI,KAAK,CAAC,gBAAgB,CAAC,IAAY,EAAE,OAAuB,EAAE;QACnE,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,sBAAsB,CAAC,IAAI,EAAE,IAAI,CAAC,CAAA;QAC5D,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACxB,OAAO,EAAE,CAAA;QACX,CAAC;QACD,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,CAAA;QAC7C,MAAM,GAAG,GAAG,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE;YAC7B,OAAO,IAAI,UAAU,CAAY,QAAQ,CAAC,EAAE;gBAC1C,IAAI,CAAC,YAAY,CAAC,QAAQ,EAAE,CAAC,KAAK,CAAC,EAAE,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAU,EAAE,EAAE;oBAC9D,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gBACnB,CAAC,CAAC,CAAA;YACJ,CAAC,CAAC,CAAC,IAAI,CACL,MAAM,CAAC,CAAC,GAAG,EAAE,IAAI,EAAE,EAAE;gBACnB,GAAG,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC,CAAA;gBACjB,OAAO,GAAG,CAAA;YACZ,CAAC,EAAE,EAAe,CAAC,EACnB,GAAG,CAAC,QAAQ,CAAC,EAAE,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,KAAK,EAAE,KAAK,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,CACnE,CAAA;QACH,CAAC,CAAC,CAAA;QACF,MAAM,GAAG,GAAG,MAAM,cAAc,CAAC,KAAK,CAAC,GAAG,GAAG,CAAC,CAAC,CAAA;QAC/C,qEAAqE;QACrE,oFAAoF;QACpF,OAAO,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE;YACpB,IAAI,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;gBACZ,OAAO,KAAK,CAAA;YACd,CAAC;YACD,MAAM,UAAU,GAAG,CAAC,CAAC,CAAC,KAAK,IAAI,CAAC,CAAC,GAAG,CAAC,CAAA;YACrC,OAAO,WAAW,CAAC,CAAC,CAAC,IAAI,EAAE,UAAU,CAAC,KAAK,IAAI,CAAA;QACjD,CAAC,CAAC,CAAA;IACJ,CAAC;CACF"}
|
package/esm/block-view.js
CHANGED
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
import AbortablePromiseCache from '@gmod/abortable-promise-cache';
|
|
2
|
-
import QuickLRU from 'quick-lru';
|
|
2
|
+
import QuickLRU from '@jbrowse/quick-lru';
|
|
3
3
|
import Range from "./range.js";
|
|
4
4
|
import { decompressAndParseBigWigBlocks, decompressAndParseSummaryBlocks, unzipBatch, } from "./unzip.js";
|
|
5
5
|
import { groupBlocks } from "./util.js";
|
|
@@ -531,6 +531,7 @@ export class BlockView {
|
|
|
531
531
|
starts: new Int32Array(0),
|
|
532
532
|
ends: new Int32Array(0),
|
|
533
533
|
scores: new Float32Array(0),
|
|
534
|
+
isSummary: false,
|
|
534
535
|
};
|
|
535
536
|
}
|
|
536
537
|
if (allStarts.length === 1) {
|
|
@@ -538,6 +539,7 @@ export class BlockView {
|
|
|
538
539
|
starts: allStarts[0],
|
|
539
540
|
ends: allEnds[0],
|
|
540
541
|
scores: allScores[0],
|
|
542
|
+
isSummary: false,
|
|
541
543
|
};
|
|
542
544
|
}
|
|
543
545
|
const starts = new Int32Array(totalCount);
|
|
@@ -550,7 +552,7 @@ export class BlockView {
|
|
|
550
552
|
scores.set(allScores[i], offset);
|
|
551
553
|
offset += allStarts[i].length;
|
|
552
554
|
}
|
|
553
|
-
return { starts, ends, scores };
|
|
555
|
+
return { starts, ends, scores, isSummary: false };
|
|
554
556
|
}
|
|
555
557
|
async readSummaryFeaturesAsArrays(blocks, opts = {}) {
|
|
556
558
|
const { uncompressBufSize } = this;
|
|
@@ -615,6 +617,7 @@ export class BlockView {
|
|
|
615
617
|
scores: new Float32Array(0),
|
|
616
618
|
minScores: new Float32Array(0),
|
|
617
619
|
maxScores: new Float32Array(0),
|
|
620
|
+
isSummary: true,
|
|
618
621
|
};
|
|
619
622
|
}
|
|
620
623
|
if (allStarts.length === 1) {
|
|
@@ -624,6 +627,7 @@ export class BlockView {
|
|
|
624
627
|
scores: allScores[0],
|
|
625
628
|
minScores: allMinScores[0],
|
|
626
629
|
maxScores: allMaxScores[0],
|
|
630
|
+
isSummary: true,
|
|
627
631
|
};
|
|
628
632
|
}
|
|
629
633
|
const starts = new Int32Array(totalCount);
|
|
@@ -640,7 +644,14 @@ export class BlockView {
|
|
|
640
644
|
maxScores.set(allMaxScores[i], offset);
|
|
641
645
|
offset += allStarts[i].length;
|
|
642
646
|
}
|
|
643
|
-
return {
|
|
647
|
+
return {
|
|
648
|
+
starts,
|
|
649
|
+
ends,
|
|
650
|
+
scores,
|
|
651
|
+
minScores,
|
|
652
|
+
maxScores,
|
|
653
|
+
isSummary: true,
|
|
654
|
+
};
|
|
644
655
|
}
|
|
645
656
|
}
|
|
646
657
|
//# sourceMappingURL=block-view.js.map
|
package/esm/block-view.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
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1
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+
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AC,MAAM,GAAG,CAAC,EAAE,CAAC;wBAC7B,SAAS,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;wBAC7B,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;wBACzB,SAAS,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;wBAC7B,UAAU,IAAI,MAAM,CAAC,MAAM,CAAC,MAAM,CAAA;oBACpC,CAAC;gBACH,CAAC;YACH,CAAC;QACH,CAAC,CAAC,CACH,CAAA;QAED,IAAI,SAAS,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC3B,OAAO;gBACL,MAAM,EAAE,IAAI,UAAU,CAAC,CAAC,CAAC;gBACzB,IAAI,EAAE,IAAI,UAAU,CAAC,CAAC,CAAC;gBACvB,MAAM,EAAE,IAAI,YAAY,CAAC,CAAC,CAAC;gBAC3B,SAAS,EAAE,KAAc;aAC1B,CAAA;QACH,CAAC;QAED,IAAI,SAAS,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC3B,OAAO;gBACL,MAAM,EAAE,SAAS,CAAC,CAAC,CAAE;gBACrB,IAAI,EAAE,OAAO,CAAC,CAAC,CAAE;gBACjB,MAAM,EAAE,SAAS,CAAC,CAAC,CAAE;gBACrB,SAAS,EAAE,KAAc;aAC1B,CAAA;QACH,CAAC;QAED,MAAM,MAAM,GAAG,IAAI,UAAU,CAAC,UAAU,CAAC,CAAA;QACzC,MAAM,IAAI,GAAG,IAAI,UAAU,CAAC,UAAU,CAAC,CAAA;QACvC,MAAM,MAAM,GAAG,IAAI,YAAY,CAAC,UAAU,CAAC,CAAA;QAC3C,IAAI,MAAM,GAAG,CAAC,CAAA;QACd,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;YAC1C,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC,CAAE,EAAE,MAAM,CAAC,CAAA;YACjC,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAE,EAAE,MAAM,CAAC,CAAA;YAC7B,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC,CAAE,EAAE,MAAM,CAAC,CAAA;YACjC,MAAM,IAAI,SAAS,CAAC,CAAC,CAAE,CAAC,MAAM,CAAA;QAChC,CAAC;QAED,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,SAAS,EAAE,KAAc,EAAE,CAAA;IAC5D,CAAC;IAEM,KAAK,CAAC,2BAA2B,CACtC,MAA4C,EAC5C,OAAgB,EAAE;QAElB,MAAM,EAAE,iBAAiB,EAAE,GAAG,IAAI,CAAA;QAClC,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,GAAG,IAAI,CAAA;QAChC,MAAM,kBAAkB,GAAG,WAAW,CAAC,MAAM,CAAC,CAAA;QAE9C,MAAM,SAAS,GAAiB,EAAE,CAAA;QAClC,MAAM,OAAO,GAAiB,EAAE,CAAA;QAChC,MAAM,SAAS,GAAmB,EAAE,CAAA;QACpC,MAAM,YAAY,GAAmB,EAAE,CAAA;QACvC,MAAM,YAAY,GAAmB,EAAE,CAAA;QACvC,IAAI,UAAU,GAAG,CAAC,CAAA;QAElB,MAAM,OAAO,CAAC,GAAG,CACf,kBAAkB,CAAC,GAAG,CAAC,KAAK,EAAC,UAAU,EAAC,EAAE;YACxC,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,GAAG,UAAU,CAAA;YACrC,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,YAAY,CAAC,GAAG,CACtC,GAAG,MAAM,IAAI,MAAM,EAAE,EACrB,UAAU,EACV,MAAM,CACP,CAAA;YAED,MAAM,WAAW,GAAG,UAAU,CAAC,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;gBAClD,MAAM,EAAE,KAAK,CAAC,MAAM,GAAG,UAAU,CAAC,MAAM;gBACxC,MAAM,EAAE,KAAK,CAAC,MAAM;aACrB,CAAC,CAAC,CAAA;YAEH,IAAI,iBAAiB,GAAG,CAAC,EAAE,CAAC;gBAC1B,MAAM,MAAM,GAAG,MAAM,+BAA+B,CAClD,IAAI,EACJ,WAAW,EACX,iBAAiB,EACjB,OAAO,EAAE,KAAK,IAAI,CAAC,EACnB,OAAO,EAAE,KAAK,IAAI,CAAC,EACnB,OAAO,EAAE,GAAG,IAAI,CAAC,CAClB,CAAA;gBACD,IAAI,MAAM,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;oBAC7B,SAAS,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;oBAC7B,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;oBACzB,SAAS,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;oBAC7B,YAAY,CAAC,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,CAAA;oBACnC,YAAY,CAAC,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,CAAA;oBACnC,UAAU,IAAI,MAAM,CAAC,MAAM,CAAC,MAAM,CAAA;gBACpC,CAAC;YACH,CAAC;iBAAM,CAAC;gBACN,KAAK,MAAM,KAAK,IAAI,WAAW,EAAE,CAAC;oBAChC,MAAM,SAAS,GAAG,IAAI,CAAC,QAAQ,CAC7B,KAAK,CAAC,MAAM,EACZ,KAAK,CAAC,MAAM,GAAG,KAAK,CAAC,MAAM,CAC5B,CAAA;oBACD,MAAM,QAAQ,GAAG,IAAI,CAAC,iBAAiB,CAAC,SAAS,EAAE,CAAC,EAAE,OAAO,CAAC,CAAA;oBAC9D,IAAI,QAAQ,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;wBACxB,MAAM,MAAM,GAAG,IAAI,UAAU,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;wBAC9C,MAAM,IAAI,GAAG,IAAI,UAAU,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;wBAC5C,MAAM,MAAM,GAAG,IAAI,YAAY,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;wBAChD,MAAM,SAAS,GAAG,IAAI,YAAY,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;wBACnD,MAAM,SAAS,GAAG,IAAI,YAAY,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;wBACnD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;4BACzC,MAAM,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAE,CAAA;4BACtB,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,KAAK,CAAA;4BACnB,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAA;4BACf,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,KAAK,IAAI,CAAC,CAAA;4BACxB,SAAS,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAA;4BAC9B,SAAS,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAA;wBAChC,CAAC;wBACD,SAAS,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA;wBACtB,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;wBAClB,SAAS,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA;wBACtB,YAAY,CAAC,IAAI,CAAC,SAAS,CAAC,CAAA;wBAC5B,YAAY,CAAC,IAAI,CAAC,SAAS,CAAC,CAAA;wBAC5B,UAAU,IAAI,QAAQ,CAAC,MAAM,CAAA;oBAC/B,CAAC;gBACH,CAAC;YACH,CAAC;QACH,CAAC,CAAC,CACH,CAAA;QAED,IAAI,SAAS,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC3B,OAAO;gBACL,MAAM,EAAE,IAAI,UAAU,CAAC,CAAC,CAAC;gBACzB,IAAI,EAAE,IAAI,UAAU,CAAC,CAAC,CAAC;gBACvB,MAAM,EAAE,IAAI,YAAY,CAAC,CAAC,CAAC;gBAC3B,SAAS,EAAE,IAAI,YAAY,CAAC,CAAC,CAAC;gBAC9B,SAAS,EAAE,IAAI,YAAY,CAAC,CAAC,CAAC;gBAC9B,SAAS,EAAE,IAAa;aACzB,CAAA;QACH,CAAC;QAED,IAAI,SAAS,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC3B,OAAO;gBACL,MAAM,EAAE,SAAS,CAAC,CAAC,CAAE;gBACrB,IAAI,EAAE,OAAO,CAAC,CAAC,CAAE;gBACjB,MAAM,EAAE,SAAS,CAAC,CAAC,CAAE;gBACrB,SAAS,EAAE,YAAY,CAAC,CAAC,CAAE;gBAC3B,SAAS,EAAE,YAAY,CAAC,CAAC,CAAE;gBAC3B,SAAS,EAAE,IAAa;aACzB,CAAA;QACH,CAAC;QAED,MAAM,MAAM,GAAG,IAAI,UAAU,CAAC,UAAU,CAAC,CAAA;QACzC,MAAM,IAAI,GAAG,IAAI,UAAU,CAAC,UAAU,CAAC,CAAA;QACvC,MAAM,MAAM,GAAG,IAAI,YAAY,CAAC,UAAU,CAAC,CAAA;QAC3C,MAAM,SAAS,GAAG,IAAI,YAAY,CAAC,UAAU,CAAC,CAAA;QAC9C,MAAM,SAAS,GAAG,IAAI,YAAY,CAAC,UAAU,CAAC,CAAA;QAC9C,IAAI,MAAM,GAAG,CAAC,CAAA;QACd,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;YAC1C,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC,CAAE,EAAE,MAAM,CAAC,CAAA;YACjC,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAE,EAAE,MAAM,CAAC,CAAA;YAC7B,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC,CAAE,EAAE,MAAM,CAAC,CAAA;YACjC,SAAS,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,CAAE,EAAE,MAAM,CAAC,CAAA;YACvC,SAAS,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,CAAE,EAAE,MAAM,CAAC,CAAA;YACvC,MAAM,IAAI,SAAS,CAAC,CAAC,CAAE,CAAC,MAAM,CAAA;QAChC,CAAC;QAED,OAAO;YACL,MAAM;YACN,IAAI;YACJ,MAAM;YACN,SAAS;YACT,SAAS;YACT,SAAS,EAAE,IAAa;SACzB,CAAA;IACH,CAAC;CACF"}
|
package/esm/types.d.ts
CHANGED
|
@@ -63,6 +63,7 @@ export interface BigWigFeatureArrays {
|
|
|
63
63
|
starts: Int32Array;
|
|
64
64
|
ends: Int32Array;
|
|
65
65
|
scores: Float32Array;
|
|
66
|
+
isSummary: false;
|
|
66
67
|
}
|
|
67
68
|
export interface SummaryFeatureArrays {
|
|
68
69
|
starts: Int32Array;
|
|
@@ -70,4 +71,5 @@ export interface SummaryFeatureArrays {
|
|
|
70
71
|
scores: Float32Array;
|
|
71
72
|
minScores: Float32Array;
|
|
72
73
|
maxScores: Float32Array;
|
|
74
|
+
isSummary: true;
|
|
73
75
|
}
|
package/esm/unzip.d.ts
CHANGED
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import type { BigWigFeatureArrays, SummaryFeatureArrays } from './wasm/inflate-wasm-inlined.js';
|
|
1
|
+
import type { BigWigFeatureArrays as WasmBigWigFeatureArrays, SummaryFeatureArrays as WasmSummaryFeatureArrays } from './wasm/inflate-wasm-inlined.js';
|
|
2
2
|
export interface UnzipBatchResult {
|
|
3
3
|
data: Uint8Array;
|
|
4
4
|
offsets: number[];
|
|
@@ -10,9 +10,9 @@ export declare function unzipBatch(data: Uint8Array, blocks: {
|
|
|
10
10
|
export declare function decompressAndParseBigWigBlocks(data: Uint8Array, blocks: {
|
|
11
11
|
offset: number;
|
|
12
12
|
length: number;
|
|
13
|
-
}[], maxOutputSize: number, reqStart: number, reqEnd: number): Promise<
|
|
13
|
+
}[], maxOutputSize: number, reqStart: number, reqEnd: number): Promise<WasmBigWigFeatureArrays>;
|
|
14
14
|
export declare function decompressAndParseSummaryBlocks(data: Uint8Array, blocks: {
|
|
15
15
|
offset: number;
|
|
16
16
|
length: number;
|
|
17
|
-
}[], maxOutputSize: number, reqChrId: number, reqStart: number, reqEnd: number): Promise<
|
|
17
|
+
}[], maxOutputSize: number, reqChrId: number, reqStart: number, reqEnd: number): Promise<WasmSummaryFeatureArrays>;
|
|
18
18
|
export type { BigWigFeatureArrays, SummaryFeatureArrays } from './types.ts';
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@gmod/bbi",
|
|
3
|
-
"version": "8.0.
|
|
3
|
+
"version": "8.0.4",
|
|
4
4
|
"description": "Parser for BigWig/BigBed files",
|
|
5
5
|
"license": "MIT",
|
|
6
6
|
"repository": "GMOD/bbi-js",
|
|
@@ -50,9 +50,9 @@
|
|
|
50
50
|
],
|
|
51
51
|
"dependencies": {
|
|
52
52
|
"@gmod/abortable-promise-cache": "^3.0.1",
|
|
53
|
+
"@jbrowse/quick-lru": "^7.0.0",
|
|
53
54
|
"generic-filehandle2": "^2.0.16",
|
|
54
55
|
"pako-esm2": "^2.0.2",
|
|
55
|
-
"quick-lru": "^4.0.0",
|
|
56
56
|
"rxjs": "^7.8.0"
|
|
57
57
|
},
|
|
58
58
|
"devDependencies": {
|
|
@@ -60,7 +60,7 @@
|
|
|
60
60
|
"@types/node": "^24.10.0",
|
|
61
61
|
"@typescript-eslint/eslint-plugin": "^8.50.0",
|
|
62
62
|
"@typescript-eslint/parser": "^8.50.0",
|
|
63
|
-
"@vitest/coverage-v8": "^4.0.
|
|
63
|
+
"@vitest/coverage-v8": "^4.0.16",
|
|
64
64
|
"eslint": "^9.39.2",
|
|
65
65
|
"eslint-plugin-import": "^2.31.0",
|
|
66
66
|
"eslint-plugin-unicorn": "^62.0.0",
|
|
@@ -69,7 +69,7 @@
|
|
|
69
69
|
"standard-changelog": "^7.0.1",
|
|
70
70
|
"typescript": "^5.1.6",
|
|
71
71
|
"typescript-eslint": "^8.50.0",
|
|
72
|
-
"vitest": "^4.0.
|
|
72
|
+
"vitest": "^4.0.16",
|
|
73
73
|
"webpack": "^5.104.0",
|
|
74
74
|
"webpack-cli": "^6.0.1"
|
|
75
75
|
},
|
package/src/bbi.ts
CHANGED
|
@@ -393,6 +393,7 @@ export abstract class BBI {
|
|
|
393
393
|
starts: new Int32Array(0),
|
|
394
394
|
ends: new Int32Array(0),
|
|
395
395
|
scores: new Float32Array(0),
|
|
396
|
+
isSummary: false as const,
|
|
396
397
|
}
|
|
397
398
|
}
|
|
398
399
|
|
|
@@ -414,7 +415,14 @@ export abstract class BBI {
|
|
|
414
415
|
maxScores[i] = f.maxScore ?? 0
|
|
415
416
|
}
|
|
416
417
|
|
|
417
|
-
return {
|
|
418
|
+
return {
|
|
419
|
+
starts,
|
|
420
|
+
ends,
|
|
421
|
+
scores,
|
|
422
|
+
minScores,
|
|
423
|
+
maxScores,
|
|
424
|
+
isSummary: true as const,
|
|
425
|
+
}
|
|
418
426
|
}
|
|
419
427
|
|
|
420
428
|
const starts = new Int32Array(count)
|
|
@@ -428,6 +436,6 @@ export abstract class BBI {
|
|
|
428
436
|
scores[i] = f.score ?? 0
|
|
429
437
|
}
|
|
430
438
|
|
|
431
|
-
return { starts, ends, scores }
|
|
439
|
+
return { starts, ends, scores, isSummary: false as const }
|
|
432
440
|
}
|
|
433
441
|
}
|
package/src/bigbed.ts
CHANGED
package/src/block-view.ts
CHANGED
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
import AbortablePromiseCache from '@gmod/abortable-promise-cache'
|
|
2
|
-
import QuickLRU from 'quick-lru'
|
|
2
|
+
import QuickLRU from '@jbrowse/quick-lru'
|
|
3
3
|
|
|
4
4
|
import Range from './range.ts'
|
|
5
5
|
import {
|
|
@@ -701,6 +701,7 @@ export class BlockView {
|
|
|
701
701
|
starts: new Int32Array(0),
|
|
702
702
|
ends: new Int32Array(0),
|
|
703
703
|
scores: new Float32Array(0),
|
|
704
|
+
isSummary: false as const,
|
|
704
705
|
}
|
|
705
706
|
}
|
|
706
707
|
|
|
@@ -709,6 +710,7 @@ export class BlockView {
|
|
|
709
710
|
starts: allStarts[0]!,
|
|
710
711
|
ends: allEnds[0]!,
|
|
711
712
|
scores: allScores[0]!,
|
|
713
|
+
isSummary: false as const,
|
|
712
714
|
}
|
|
713
715
|
}
|
|
714
716
|
|
|
@@ -723,7 +725,7 @@ export class BlockView {
|
|
|
723
725
|
offset += allStarts[i]!.length
|
|
724
726
|
}
|
|
725
727
|
|
|
726
|
-
return { starts, ends, scores }
|
|
728
|
+
return { starts, ends, scores, isSummary: false as const }
|
|
727
729
|
}
|
|
728
730
|
|
|
729
731
|
public async readSummaryFeaturesAsArrays(
|
|
@@ -812,6 +814,7 @@ export class BlockView {
|
|
|
812
814
|
scores: new Float32Array(0),
|
|
813
815
|
minScores: new Float32Array(0),
|
|
814
816
|
maxScores: new Float32Array(0),
|
|
817
|
+
isSummary: true as const,
|
|
815
818
|
}
|
|
816
819
|
}
|
|
817
820
|
|
|
@@ -822,6 +825,7 @@ export class BlockView {
|
|
|
822
825
|
scores: allScores[0]!,
|
|
823
826
|
minScores: allMinScores[0]!,
|
|
824
827
|
maxScores: allMaxScores[0]!,
|
|
828
|
+
isSummary: true as const,
|
|
825
829
|
}
|
|
826
830
|
}
|
|
827
831
|
|
|
@@ -840,6 +844,13 @@ export class BlockView {
|
|
|
840
844
|
offset += allStarts[i]!.length
|
|
841
845
|
}
|
|
842
846
|
|
|
843
|
-
return {
|
|
847
|
+
return {
|
|
848
|
+
starts,
|
|
849
|
+
ends,
|
|
850
|
+
scores,
|
|
851
|
+
minScores,
|
|
852
|
+
maxScores,
|
|
853
|
+
isSummary: true as const,
|
|
854
|
+
}
|
|
844
855
|
}
|
|
845
856
|
}
|
package/src/types.ts
CHANGED
|
@@ -72,6 +72,7 @@ export interface BigWigFeatureArrays {
|
|
|
72
72
|
starts: Int32Array
|
|
73
73
|
ends: Int32Array
|
|
74
74
|
scores: Float32Array
|
|
75
|
+
isSummary: false
|
|
75
76
|
}
|
|
76
77
|
|
|
77
78
|
export interface SummaryFeatureArrays {
|
|
@@ -80,4 +81,5 @@ export interface SummaryFeatureArrays {
|
|
|
80
81
|
scores: Float32Array
|
|
81
82
|
minScores: Float32Array
|
|
82
83
|
maxScores: Float32Array
|
|
84
|
+
isSummary: true
|
|
83
85
|
}
|
package/src/unzip.ts
CHANGED
|
@@ -5,8 +5,8 @@ import {
|
|
|
5
5
|
} from './wasm/inflate-wasm-inlined.js'
|
|
6
6
|
|
|
7
7
|
import type {
|
|
8
|
-
BigWigFeatureArrays,
|
|
9
|
-
SummaryFeatureArrays,
|
|
8
|
+
BigWigFeatureArrays as WasmBigWigFeatureArrays,
|
|
9
|
+
SummaryFeatureArrays as WasmSummaryFeatureArrays,
|
|
10
10
|
} from './wasm/inflate-wasm-inlined.js'
|
|
11
11
|
|
|
12
12
|
export interface UnzipBatchResult {
|
|
@@ -37,7 +37,7 @@ export async function decompressAndParseBigWigBlocks(
|
|
|
37
37
|
maxOutputSize: number,
|
|
38
38
|
reqStart: number,
|
|
39
39
|
reqEnd: number,
|
|
40
|
-
): Promise<
|
|
40
|
+
): Promise<WasmBigWigFeatureArrays> {
|
|
41
41
|
const inputOffsets = new Uint32Array(blocks.length)
|
|
42
42
|
const inputLengths = new Uint32Array(blocks.length)
|
|
43
43
|
|
|
@@ -64,7 +64,7 @@ export async function decompressAndParseSummaryBlocks(
|
|
|
64
64
|
reqChrId: number,
|
|
65
65
|
reqStart: number,
|
|
66
66
|
reqEnd: number,
|
|
67
|
-
): Promise<
|
|
67
|
+
): Promise<WasmSummaryFeatureArrays> {
|
|
68
68
|
const inputOffsets = new Uint32Array(blocks.length)
|
|
69
69
|
const inputLengths = new Uint32Array(blocks.length)
|
|
70
70
|
|
|
@@ -29,6 +29,15 @@ export interface SummaryFeatureArrays {
|
|
|
29
29
|
maxScores: Float32Array
|
|
30
30
|
}
|
|
31
31
|
|
|
32
|
+
// Discriminated union types for consumers
|
|
33
|
+
export interface BigWigFeatureArraysWithFlag extends BigWigFeatureArrays {
|
|
34
|
+
isSummary: false
|
|
35
|
+
}
|
|
36
|
+
|
|
37
|
+
export interface SummaryFeatureArraysWithFlag extends SummaryFeatureArrays {
|
|
38
|
+
isSummary: true
|
|
39
|
+
}
|
|
40
|
+
|
|
32
41
|
export function decompressAndParseBigWig(
|
|
33
42
|
inputs: Uint8Array,
|
|
34
43
|
inputOffsets: Uint32Array,
|