@gmod/bbi 6.0.3 → 7.0.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +8 -0
- package/dist/bbi.d.ts +2 -2
- package/dist/bbi.js +2 -2
- package/dist/bbi.js.map +1 -1
- package/dist/bigbed.d.ts +3 -3
- package/dist/bigbed.js +2 -2
- package/dist/bigbed.js.map +1 -1
- package/dist/bigint-polyfill/polyfill.js +3 -3
- package/dist/bigint-polyfill/polyfill.js.map +1 -1
- package/dist/bigwig.d.ts +3 -3
- package/dist/bigwig.js +4 -4
- package/dist/bigwig.js.map +1 -1
- package/dist/block-view.d.ts +1 -1
- package/dist/block-view.js +11 -11
- package/dist/block-view.js.map +1 -1
- package/dist/index.d.ts +4 -4
- package/dist/index.js +5 -5
- package/dist/index.js.map +1 -1
- package/esm/bbi.d.ts +2 -2
- package/esm/bbi.js +1 -1
- package/esm/bbi.js.map +1 -1
- package/esm/bigbed.d.ts +3 -3
- package/esm/bigbed.js +1 -1
- package/esm/bigbed.js.map +1 -1
- package/esm/bigint-polyfill/polyfill.js +1 -1
- package/esm/bigint-polyfill/polyfill.js.map +1 -1
- package/esm/bigwig.d.ts +3 -3
- package/esm/bigwig.js +2 -2
- package/esm/bigwig.js.map +1 -1
- package/esm/block-view.d.ts +1 -1
- package/esm/block-view.js +3 -3
- package/esm/block-view.js.map +1 -1
- package/esm/index.d.ts +4 -4
- package/esm/index.js +3 -3
- package/esm/index.js.map +1 -1
- package/package.json +15 -7
- package/src/bbi.ts +2 -2
- package/src/bigbed.ts +2 -2
- package/src/bigint-polyfill/polyfill.ts +1 -1
- package/src/bigwig.ts +3 -3
- package/src/block-view.ts +4 -4
- package/src/index.ts +4 -4
package/CHANGELOG.md
CHANGED
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@@ -1,3 +1,11 @@
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## [7.0.1](https://github.com/GMOD/bbi-js/compare/v7.0.0...v7.0.1) (2025-04-30)
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# [7.0.0](https://github.com/GMOD/bbi-js/compare/v6.0.3...v7.0.0) (2025-04-30)
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## [6.0.3](https://github.com/GMOD/bbi-js/compare/v6.0.2...v6.0.3) (2025-04-11)
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package/dist/bbi.d.ts
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@@ -1,6 +1,6 @@
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import { Observable } from 'rxjs';
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import { BlockView } from './block-view';
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import type { BigWigHeaderWithRefNames, Feature, RequestOptions2, RequestOptions } from './types';
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import { BlockView } from './block-view.ts';
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import type { BigWigHeaderWithRefNames, Feature, RequestOptions2, RequestOptions } from './types.ts';
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import type { GenericFilehandle } from 'generic-filehandle2';
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export declare abstract class BBI {
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protected bbi: GenericFilehandle;
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package/dist/bbi.js
CHANGED
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@@ -4,7 +4,7 @@ exports.BBI = void 0;
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const generic_filehandle2_1 = require("generic-filehandle2");
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const rxjs_1 = require("rxjs");
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const operators_1 = require("rxjs/operators");
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const
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const block_view_ts_1 = require("./block-view.js");
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const BIG_WIG_MAGIC = -2003829722;
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const BIG_BED_MAGIC = -2021002517;
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class BBI {
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@@ -235,7 +235,7 @@ class BBI {
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*/
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async getUnzoomedView(opts) {
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const { unzoomedIndexOffset, refsByName, uncompressBufSize, fileType } = await this.getHeader(opts);
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return new
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return new block_view_ts_1.BlockView(this.bbi, refsByName, unzoomedIndexOffset, uncompressBufSize > 0, fileType);
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}
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/**
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* Gets features from a BigWig file
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package/dist/bbi.js.map
CHANGED
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@@ -1 +1 @@
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+
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|
package/dist/bigbed.d.ts
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
import AbortablePromiseCache from '@gmod/abortable-promise-cache';
|
|
2
|
-
import { BBI } from './bbi';
|
|
3
|
-
import type { Feature, RequestOptions } from './types';
|
|
2
|
+
import { BBI } from './bbi.ts';
|
|
3
|
+
import type { Feature, RequestOptions } from './types.ts';
|
|
4
4
|
interface Index {
|
|
5
5
|
type: number;
|
|
6
6
|
fieldcount: number;
|
|
@@ -11,7 +11,7 @@ export declare function filterUndef<T>(ts: (T | undefined)[]): T[];
|
|
|
11
11
|
export declare class BigBed extends BBI {
|
|
12
12
|
readIndicesCache: AbortablePromiseCache<RequestOptions, Index[]>;
|
|
13
13
|
readIndices(opts?: RequestOptions): Promise<Index[]>;
|
|
14
|
-
protected getView(_scale: number, opts?: RequestOptions): Promise<import("./block-view").BlockView>;
|
|
14
|
+
protected getView(_scale: number, opts?: RequestOptions): Promise<import("./block-view.ts").BlockView>;
|
|
15
15
|
private _readIndices;
|
|
16
16
|
private searchExtraIndexBlocks;
|
|
17
17
|
searchExtraIndex(name: string, opts?: RequestOptions): Promise<Feature[]>;
|
package/dist/bigbed.js
CHANGED
|
@@ -9,11 +9,11 @@ const abortable_promise_cache_1 = __importDefault(require("@gmod/abortable-promi
|
|
|
9
9
|
const quick_lru_1 = __importDefault(require("quick-lru"));
|
|
10
10
|
const rxjs_1 = require("rxjs");
|
|
11
11
|
const operators_1 = require("rxjs/operators");
|
|
12
|
-
const
|
|
12
|
+
const bbi_ts_1 = require("./bbi.js");
|
|
13
13
|
function filterUndef(ts) {
|
|
14
14
|
return ts.filter((t) => !!t);
|
|
15
15
|
}
|
|
16
|
-
class BigBed extends
|
|
16
|
+
class BigBed extends bbi_ts_1.BBI {
|
|
17
17
|
constructor() {
|
|
18
18
|
super(...arguments);
|
|
19
19
|
this.readIndicesCache = new abortable_promise_cache_1.default({
|
package/dist/bigbed.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"bigbed.js","sourceRoot":"","sources":["../src/bigbed.ts"],"names":[],"mappings":";;;;;;AAuBA,kCAEC;AAzBD,4FAAiE;AACjE,0DAAgC;AAChC,+BAAwD;AACxD,8CAA4C;AAE5C
|
|
1
|
+
{"version":3,"file":"bigbed.js","sourceRoot":"","sources":["../src/bigbed.ts"],"names":[],"mappings":";;;;;;AAuBA,kCAEC;AAzBD,4FAAiE;AACjE,0DAAgC;AAChC,+BAAwD;AACxD,8CAA4C;AAE5C,qCAA8B;AAkB9B,SAAgB,WAAW,CAAI,EAAqB;IAClD,OAAO,EAAE,CAAC,MAAM,CAAC,CAAC,CAAgB,EAAU,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;AACrD,CAAC;AAED,MAAa,MAAO,SAAQ,YAAG;IAA/B;;QACS,qBAAgB,GAAG,IAAI,iCAAqB,CAA0B;YAC3E,KAAK,EAAE,IAAI,mBAAQ,CAAC,EAAE,OAAO,EAAE,CAAC,EAAE,CAAC;YACnC,IAAI,EAAE,CAAC,IAAoB,EAAE,MAAoB,EAAE,EAAE,CACnD,IAAI,CAAC,YAAY,CAAC,EAAE,GAAG,IAAI,EAAE,MAAM,EAAE,CAAC;SACzC,CAAC,CAAA;IA4MJ,CAAC;IA1MQ,WAAW,CAAC,OAAuB,EAAE;QAC1C,MAAM,EAAE,MAAM,EAAE,GAAG,IAAI,EAAE,GAAG,IAAI,CAAA;QAChC,OAAO,IAAI,CAAC,gBAAgB,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,MAAM,CAAC,CAAA;IACtE,CAAC;IAED;;OAEG;IACO,KAAK,CAAC,OAAO,CAAC,MAAc,EAAE,IAAqB;QAC3D,OAAO,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,CAAA;IACnC,CAAC;IAED;;;;;;OAMG;IACK,KAAK,CAAC,YAAY,CAAC,IAAoB;QAC7C,MAAM,EAAE,eAAe,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,CAAA;QACtD,MAAM,CAAC,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,EAAE,MAAM,CAAC,eAAe,CAAC,CAAC,CAAA;QAE1D,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;QAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;QACd,iDAAiD;QACjD,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,KAAK,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QAC9C,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;QAC9D,MAAM,IAAI,CAAC,CAAA;QAEX,wCAAwC;QACxC,IAAI,KAAK,KAAK,CAAC,EAAE,CAAC;YAChB,OAAO,EAAE,CAAA;QACX,CAAC;QAED,MAAM,QAAQ,GAAG,EAAE,CAAA;QACnB,MAAM,GAAG,GAAG,QAAQ,GAAG,KAAK,CAAA;QAC5B,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,MAAM,CAAC,UAAU,CAAC,CAAC,CAAA;QAE3D,MAAM,OAAO,GAAG,EAAa,CAAA;QAE7B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;YAClC,MAAM,CAAC,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC,GAAG,QAAQ,CAAC,CAAA;YACvC,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;YAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;YACd,MAAM,IAAI,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC5C,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,UAAU,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAClD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;YAC9D,MAAM,IAAI,CAAC,GAAG,CAAC,CAAA,CAAC,QAAQ;YACxB,MAAM,KAAK,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC7C,OAAO,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,EAAE,MAAM,CAAC,UAAU,CAAC,EAAE,KAAK,EAAE,CAAC,CAAA;QACvE,CAAC;QACD,OAAO,OAAO,CAAA;IAChB,CAAC;IAED;;;;;;;;;OASG;IACK,KAAK,CAAC,sBAAsB,CAClC,IAAY,EACZ,OAAuB,EAAE;QAEzB,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,WAAW,CAAC,IAAI,CAAC,CAAA;QAC5C,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,OAAO,EAAE,CAAA;QACX,CAAC;QACD,MAAM,OAAO,GAAG,IAAI,WAAW,CAAC,MAAM,CAAC,CAAA;QACvC,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,EAAC,KAAK,EAAC,EAAE;YACrC,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;YACxC,MAAM,CAAC,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,EAAE,OAAO,EAAE,IAAI,CAAC,CAAA;YAEhD,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;YAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;YACd,iDAAiD;YACjD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,SAAS,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YACjD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,OAAO,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC/C,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,OAAO,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC/C,MAAM,IAAI,CAAC,CAAA;YACX,iEAAiE;YACjE,MAAM,IAAI,CAAC,CAAA;YAEX,MAAM,WAAW,GAAG,KAAK,EAAE,UAAkB,EAAE,EAAE;gBAC/C,MAAM,GAAG,GAAG,MAAM,CAAC,UAAU,CAAC,CAAA;gBAC9B,MAAM,GAAG,GAAG,CAAC,GAAG,SAAS,GAAG,CAAC,OAAO,GAAG,OAAO,CAAC,CAAA;gBAC/C,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,GAAG,EAAE,IAAI,CAAC,CAAA;gBAClD,MAAM,CAAC,GAAG,MAAM,CAAA;gBAChB,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;gBAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;gBACd,MAAM,QAAQ,GAAG,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC,CAAA;gBACzC,MAAM,IAAI,CAAC,CAAA,CAAC,QAAQ;gBACpB,MAAM,GAAG,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;gBAC3C,MAAM,IAAI,CAAC,CAAA;gBACX,MAAM,IAAI,GAAG,EAAE,CAAA;gBACf,IAAI,QAAQ,KAAK,CAAC,EAAE,CAAC;oBACnB,MAAM,QAAQ,GAAG,EAAE,CAAA;oBACnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC;wBAC7B,MAAM,GAAG,GAAG,OAAO;6BAChB,MAAM,CAAC,CAAC,CAAC,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,CAAC;6BAC5C,UAAU,CAAC,IAAI,EAAE,EAAE,CAAC,CAAA;wBACvB,MAAM,IAAI,OAAO,CAAA;wBACjB,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;wBAC9D,MAAM,IAAI,CAAC,CAAA;wBACX,QAAQ,CAAC,IAAI,CAAC;4BACZ,GAAG;4BACH,MAAM,EAAE,UAAU;yBACnB,CAAC,CAAA;oBACJ,CAAC;oBAED,IAAI,UAAU,GAAG,CAAC,CAAA;oBAClB,KAAK,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,IAAI,QAAQ,EAAE,CAAC;wBACvC,IAAI,IAAI,CAAC,aAAa,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,UAAU,EAAE,CAAC;4BAC9C,OAAO,WAAW,CAAC,UAAU,CAAC,CAAA;wBAChC,CAAC;wBACD,UAAU,GAAG,MAAM,CAAA;oBACrB,CAAC;oBACD,OAAO,WAAW,CAAC,UAAU,CAAC,CAAA;gBAChC,CAAC;qBAAM,IAAI,QAAQ,KAAK,CAAC,EAAE,CAAC;oBAC1B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC;wBAC7B,MAAM,GAAG,GAAG,OAAO;6BAChB,MAAM,CAAC,CAAC,CAAC,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,CAAC;6BAC5C,UAAU,CAAC,IAAI,EAAE,EAAE,CAAC,CAAA;wBACvB,MAAM,IAAI,OAAO,CAAA;wBACjB,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;wBAC9D,MAAM,IAAI,CAAC,CAAA;wBACX,MAAM,MAAM,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;wBAC/C,MAAM,IAAI,CAAC,CAAA;wBACX,MAAM,QAAQ,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;wBACjD,MAAM,IAAI,CAAC,CAAA;wBACX,IAAI,CAAC,IAAI,CAAC;4BACR,GAAG;4BACH,MAAM,EAAE,UAAU;4BAClB,MAAM;4BACN,QAAQ;yBACT,CAAC,CAAA;oBACJ,CAAC;oBAED,KAAK,MAAM,CAAC,IAAI,IAAI,EAAE,CAAC;wBACrB,IAAI,CAAC,CAAC,GAAG,KAAK,IAAI,EAAE,CAAC;4BACnB,OAAO;gCACL,GAAG,CAAC;gCACJ,KAAK;6BACN,CAAA;wBACH,CAAC;oBACH,CAAC;oBAED,OAAO,SAAS,CAAA;gBAClB,CAAC;YACH,CAAC,CAAA;YACD,OAAO,WAAW,CAAC,OAAO,GAAG,EAAE,CAAC,CAAA;QAClC,CAAC,CAAC,CAAA;QACF,OAAO,WAAW,CAAC,MAAM,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAA;IAC7C,CAAC;IAED;;;;;;;;;;OAUG;IACI,KAAK,CAAC,gBAAgB,CAAC,IAAY,EAAE,OAAuB,EAAE;QACnE,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,sBAAsB,CAAC,IAAI,EAAE,IAAI,CAAC,CAAA;QAC5D,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACxB,OAAO,EAAE,CAAA;QACX,CAAC;QACD,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,CAAA;QAC7C,MAAM,GAAG,GAAG,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE;YAC7B,OAAO,IAAI,iBAAU,CAAY,QAAQ,CAAC,EAAE;gBAC1C,IAAI,CAAC,YAAY,CAAC,QAAQ,EAAE,CAAC,KAAK,CAAC,EAAE,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAU,EAAE,EAAE;oBAC9D,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gBACnB,CAAC,CAAC,CAAA;YACJ,CAAC,CAAC,CAAC,IAAI,CACL,IAAA,kBAAM,EAAC,CAAC,GAAG,EAAE,IAAI,EAAE,EAAE,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,EACvC,IAAA,eAAG,EAAC,CAAC,CAAC,EAAE;gBACN,KAAK,MAAM,OAAO,IAAI,CAAC,EAAE,CAAC;oBACxB,OAAO,CAAC,KAAK,GAAG,KAAK,CAAC,KAAK,CAAA;gBAC7B,CAAC;gBACD,OAAO,CAAC,CAAA;YACV,CAAC,CAAC,CACH,CAAA;QACH,CAAC,CAAC,CAAA;QACF,MAAM,GAAG,GAAG,MAAM,IAAA,qBAAc,EAAC,IAAA,YAAK,EAAC,GAAG,GAAG,CAAC,CAAC,CAAA;QAC/C,OAAO,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,KAAK,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,KAAK,IAAI,CAAC,CAAA;IAC1E,CAAC;CACF;AAjND,wBAiNC"}
|
|
@@ -3,15 +3,15 @@ Object.defineProperty(exports, "__esModule", { value: true });
|
|
|
3
3
|
// from https://github.com/yume-chan/ya-webadb/blob/main/libraries/dataview-bigint-polyfill
|
|
4
4
|
// license:MIT
|
|
5
5
|
// needed for browsers including safari 14
|
|
6
|
-
const
|
|
6
|
+
const pure_ts_1 = require("./pure.js");
|
|
7
7
|
if (!('getBigInt64' in DataView)) {
|
|
8
8
|
DataView.prototype.getBigInt64 = function (byteOffset, littleEndian) {
|
|
9
|
-
return (0,
|
|
9
|
+
return (0, pure_ts_1.getBigInt64)(this, byteOffset, littleEndian);
|
|
10
10
|
};
|
|
11
11
|
}
|
|
12
12
|
if (!('getBigUint64' in DataView)) {
|
|
13
13
|
DataView.prototype.getBigUint64 = function (byteOffset, littleEndian) {
|
|
14
|
-
return (0,
|
|
14
|
+
return (0, pure_ts_1.getBigUint64)(this, byteOffset, littleEndian);
|
|
15
15
|
};
|
|
16
16
|
}
|
|
17
17
|
//# sourceMappingURL=polyfill.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"polyfill.js","sourceRoot":"","sources":["../../src/bigint-polyfill/polyfill.ts"],"names":[],"mappings":";;AAAA,2FAA2F;AAC3F,cAAc;AACd,0CAA0C;AAC1C,
|
|
1
|
+
{"version":3,"file":"polyfill.js","sourceRoot":"","sources":["../../src/bigint-polyfill/polyfill.ts"],"names":[],"mappings":";;AAAA,2FAA2F;AAC3F,cAAc;AACd,0CAA0C;AAC1C,uCAAqD;AAErD,IAAI,CAAC,CAAC,aAAa,IAAI,QAAQ,CAAC,EAAE,CAAC;IACjC,QAAQ,CAAC,SAAS,CAAC,WAAW,GAAG,UAAU,UAAU,EAAE,YAAY;QACjE,OAAO,IAAA,qBAAW,EAAC,IAAI,EAAE,UAAU,EAAE,YAAY,CAAC,CAAA;IACpD,CAAC,CAAA;AACH,CAAC;AAED,IAAI,CAAC,CAAC,cAAc,IAAI,QAAQ,CAAC,EAAE,CAAC;IAClC,QAAQ,CAAC,SAAS,CAAC,YAAY,GAAG,UAAU,UAAU,EAAE,YAAY;QAClE,OAAO,IAAA,sBAAY,EAAC,IAAI,EAAE,UAAU,EAAE,YAAY,CAAC,CAAA;IACrD,CAAC,CAAA;AACH,CAAC"}
|
package/dist/bigwig.d.ts
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
|
-
import { BBI } from './bbi';
|
|
2
|
-
import { BlockView } from './block-view';
|
|
3
|
-
import type { RequestOptions } from './types';
|
|
1
|
+
import { BBI } from './bbi.ts';
|
|
2
|
+
import { BlockView } from './block-view.ts';
|
|
3
|
+
import type { RequestOptions } from './types.ts';
|
|
4
4
|
export declare class BigWig extends BBI {
|
|
5
5
|
/**
|
|
6
6
|
* Retrieves a BlockView of a specific zoomLevel
|
package/dist/bigwig.js
CHANGED
|
@@ -1,9 +1,9 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.BigWig = void 0;
|
|
4
|
-
const
|
|
5
|
-
const
|
|
6
|
-
class BigWig extends
|
|
4
|
+
const bbi_ts_1 = require("./bbi.js");
|
|
5
|
+
const block_view_ts_1 = require("./block-view.js");
|
|
6
|
+
class BigWig extends bbi_ts_1.BBI {
|
|
7
7
|
/**
|
|
8
8
|
* Retrieves a BlockView of a specific zoomLevel
|
|
9
9
|
*
|
|
@@ -20,7 +20,7 @@ class BigWig extends bbi_1.BBI {
|
|
|
20
20
|
const zh = zoomLevels[i];
|
|
21
21
|
// eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
|
|
22
22
|
if (zh && zh.reductionLevel <= 2 * basesPerPx) {
|
|
23
|
-
return new
|
|
23
|
+
return new block_view_ts_1.BlockView(this.bbi, refsByName, zh.indexOffset, uncompressBufSize > 0, 'summary');
|
|
24
24
|
}
|
|
25
25
|
}
|
|
26
26
|
return this.getUnzoomedView(opts);
|
package/dist/bigwig.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"bigwig.js","sourceRoot":"","sources":["../src/bigwig.ts"],"names":[],"mappings":";;;AAAA
|
|
1
|
+
{"version":3,"file":"bigwig.js","sourceRoot":"","sources":["../src/bigwig.ts"],"names":[],"mappings":";;;AAAA,qCAA8B;AAC9B,mDAA2C;AAI3C,MAAa,MAAO,SAAQ,YAAG;IAC7B;;;;;;;OAOG;IACO,KAAK,CAAC,OAAO,CAAC,KAAa,EAAE,IAAoB;QACzD,MAAM,EAAE,UAAU,EAAE,UAAU,EAAE,iBAAiB,EAAE,GACjD,MAAM,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,CAAA;QAC5B,MAAM,UAAU,GAAG,CAAC,GAAG,KAAK,CAAA;QAC5B,MAAM,QAAQ,GAAG,UAAU,CAAC,MAAM,GAAG,CAAC,CAAA;QAEtC,KAAK,IAAI,CAAC,GAAG,QAAQ,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;YACtC,MAAM,EAAE,GAAG,UAAU,CAAC,CAAC,CAAC,CAAA;YACxB,uEAAuE;YACvE,IAAI,EAAE,IAAI,EAAE,CAAC,cAAc,IAAI,CAAC,GAAG,UAAU,EAAE,CAAC;gBAC9C,OAAO,IAAI,yBAAS,CAClB,IAAI,CAAC,GAAG,EACR,UAAU,EACV,EAAE,CAAC,WAAW,EACd,iBAAiB,GAAG,CAAC,EACrB,SAAS,CACV,CAAA;YACH,CAAC;QACH,CAAC;QACD,OAAO,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,CAAA;IACnC,CAAC;CACF;AA9BD,wBA8BC"}
|
package/dist/block-view.d.ts
CHANGED
package/dist/block-view.js
CHANGED
|
@@ -6,9 +6,9 @@ Object.defineProperty(exports, "__esModule", { value: true });
|
|
|
6
6
|
exports.BlockView = void 0;
|
|
7
7
|
const abortable_promise_cache_1 = __importDefault(require("@gmod/abortable-promise-cache"));
|
|
8
8
|
const quick_lru_1 = __importDefault(require("quick-lru"));
|
|
9
|
-
const
|
|
10
|
-
const
|
|
11
|
-
const
|
|
9
|
+
const range_ts_1 = __importDefault(require("./range.js"));
|
|
10
|
+
const unzip_ts_1 = require("./unzip.js");
|
|
11
|
+
const util_ts_1 = require("./util.js");
|
|
12
12
|
const decoder = typeof TextDecoder !== 'undefined' ? new TextDecoder('utf8') : undefined;
|
|
13
13
|
function coordFilter(s1, e1, s2, e2) {
|
|
14
14
|
return s1 < e2 && e1 >= s2;
|
|
@@ -159,14 +159,14 @@ class BlockView {
|
|
|
159
159
|
outstanding += offset.length;
|
|
160
160
|
// Upper bound on size, based on a completely full leaf node.
|
|
161
161
|
const maxCirBlockSpan = 4 + cirBlockSize * 32;
|
|
162
|
-
let spans = new
|
|
162
|
+
let spans = new range_ts_1.default([
|
|
163
163
|
{
|
|
164
164
|
min: offset[0],
|
|
165
165
|
max: offset[0] + maxCirBlockSpan,
|
|
166
166
|
},
|
|
167
167
|
]);
|
|
168
168
|
for (let i = 1; i < offset.length; i += 1) {
|
|
169
|
-
const blockSpan = new
|
|
169
|
+
const blockSpan = new range_ts_1.default([
|
|
170
170
|
{
|
|
171
171
|
min: offset[i],
|
|
172
172
|
max: offset[i] + maxCirBlockSpan,
|
|
@@ -331,19 +331,19 @@ class BlockView {
|
|
|
331
331
|
try {
|
|
332
332
|
const { blockType, isCompressed } = this;
|
|
333
333
|
const { signal, request } = opts;
|
|
334
|
-
const blockGroupsToFetch = (0,
|
|
335
|
-
(0,
|
|
334
|
+
const blockGroupsToFetch = (0, util_ts_1.groupBlocks)(blocks);
|
|
335
|
+
(0, util_ts_1.checkAbortSignal)(signal);
|
|
336
336
|
await Promise.all(blockGroupsToFetch.map(async (blockGroup) => {
|
|
337
|
-
(0,
|
|
337
|
+
(0, util_ts_1.checkAbortSignal)(signal);
|
|
338
338
|
const { length, offset } = blockGroup;
|
|
339
339
|
const data = await this.featureCache.get(`${length}_${offset}`, blockGroup, signal);
|
|
340
340
|
for (const block of blockGroup.blocks) {
|
|
341
|
-
(0,
|
|
341
|
+
(0, util_ts_1.checkAbortSignal)(signal);
|
|
342
342
|
let resultData = data.subarray(Number(block.offset) - Number(blockGroup.offset));
|
|
343
343
|
if (isCompressed) {
|
|
344
|
-
resultData = (0,
|
|
344
|
+
resultData = (0, unzip_ts_1.unzip)(resultData);
|
|
345
345
|
}
|
|
346
|
-
(0,
|
|
346
|
+
(0, util_ts_1.checkAbortSignal)(signal);
|
|
347
347
|
switch (blockType) {
|
|
348
348
|
case 'summary': {
|
|
349
349
|
observer.next(this.parseSummaryBlock(resultData, 0, request));
|
package/dist/block-view.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
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1
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+
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|
package/dist/index.d.ts
CHANGED
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import './bigint-polyfill/polyfill';
|
|
2
|
-
export { BigWig } from './bigwig';
|
|
3
|
-
export { BigBed } from './bigbed';
|
|
4
|
-
export type { BigWigHeader, Feature, RequestOptions } from './types';
|
|
1
|
+
import './bigint-polyfill/polyfill.ts';
|
|
2
|
+
export { BigWig } from './bigwig.ts';
|
|
3
|
+
export { BigBed } from './bigbed.ts';
|
|
4
|
+
export type { BigWigHeader, Feature, RequestOptions } from './types.ts';
|
package/dist/index.js
CHANGED
|
@@ -1,9 +1,9 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.BigBed = exports.BigWig = void 0;
|
|
4
|
-
require("./bigint-polyfill/polyfill");
|
|
5
|
-
var
|
|
6
|
-
Object.defineProperty(exports, "BigWig", { enumerable: true, get: function () { return
|
|
7
|
-
var
|
|
8
|
-
Object.defineProperty(exports, "BigBed", { enumerable: true, get: function () { return
|
|
4
|
+
require("./bigint-polyfill/polyfill.js");
|
|
5
|
+
var bigwig_ts_1 = require("./bigwig.js");
|
|
6
|
+
Object.defineProperty(exports, "BigWig", { enumerable: true, get: function () { return bigwig_ts_1.BigWig; } });
|
|
7
|
+
var bigbed_ts_1 = require("./bigbed.js");
|
|
8
|
+
Object.defineProperty(exports, "BigBed", { enumerable: true, get: function () { return bigbed_ts_1.BigBed; } });
|
|
9
9
|
//# sourceMappingURL=index.js.map
|
package/dist/index.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;AAAA,
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;AAAA,yCAAsC;AACtC,yCAAoC;AAA3B,mGAAA,MAAM,OAAA;AACf,yCAAoC;AAA3B,mGAAA,MAAM,OAAA"}
|
package/esm/bbi.d.ts
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
import { Observable } from 'rxjs';
|
|
2
|
-
import { BlockView } from './block-view';
|
|
3
|
-
import type { BigWigHeaderWithRefNames, Feature, RequestOptions2, RequestOptions } from './types';
|
|
2
|
+
import { BlockView } from './block-view.ts';
|
|
3
|
+
import type { BigWigHeaderWithRefNames, Feature, RequestOptions2, RequestOptions } from './types.ts';
|
|
4
4
|
import type { GenericFilehandle } from 'generic-filehandle2';
|
|
5
5
|
export declare abstract class BBI {
|
|
6
6
|
protected bbi: GenericFilehandle;
|
package/esm/bbi.js
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
import { LocalFile, RemoteFile } from 'generic-filehandle2';
|
|
2
2
|
import { Observable, firstValueFrom } from 'rxjs';
|
|
3
3
|
import { toArray } from 'rxjs/operators';
|
|
4
|
-
import { BlockView } from
|
|
4
|
+
import { BlockView } from "./block-view.js";
|
|
5
5
|
const BIG_WIG_MAGIC = -2003829722;
|
|
6
6
|
const BIG_BED_MAGIC = -2021002517;
|
|
7
7
|
export class BBI {
|
package/esm/bbi.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"bbi.js","sourceRoot":"","sources":["../src/bbi.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,qBAAqB,CAAA;AAC3D,OAAO,EAAE,UAAU,EAAE,cAAc,EAAE,MAAM,MAAM,CAAA;AACjD,OAAO,EAAE,OAAO,EAAE,MAAM,gBAAgB,CAAA;AAExC,OAAO,EAAE,SAAS,EAAE,MAAM,
|
|
1
|
+
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|
package/esm/bigbed.d.ts
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
import AbortablePromiseCache from '@gmod/abortable-promise-cache';
|
|
2
|
-
import { BBI } from './bbi';
|
|
3
|
-
import type { Feature, RequestOptions } from './types';
|
|
2
|
+
import { BBI } from './bbi.ts';
|
|
3
|
+
import type { Feature, RequestOptions } from './types.ts';
|
|
4
4
|
interface Index {
|
|
5
5
|
type: number;
|
|
6
6
|
fieldcount: number;
|
|
@@ -11,7 +11,7 @@ export declare function filterUndef<T>(ts: (T | undefined)[]): T[];
|
|
|
11
11
|
export declare class BigBed extends BBI {
|
|
12
12
|
readIndicesCache: AbortablePromiseCache<RequestOptions, Index[]>;
|
|
13
13
|
readIndices(opts?: RequestOptions): Promise<Index[]>;
|
|
14
|
-
protected getView(_scale: number, opts?: RequestOptions): Promise<import("./block-view").BlockView>;
|
|
14
|
+
protected getView(_scale: number, opts?: RequestOptions): Promise<import("./block-view.ts").BlockView>;
|
|
15
15
|
private _readIndices;
|
|
16
16
|
private searchExtraIndexBlocks;
|
|
17
17
|
searchExtraIndex(name: string, opts?: RequestOptions): Promise<Feature[]>;
|
package/esm/bigbed.js
CHANGED
|
@@ -2,7 +2,7 @@ import AbortablePromiseCache from '@gmod/abortable-promise-cache';
|
|
|
2
2
|
import QuickLRU from 'quick-lru';
|
|
3
3
|
import { Observable, firstValueFrom, merge } from 'rxjs';
|
|
4
4
|
import { map, reduce } from 'rxjs/operators';
|
|
5
|
-
import { BBI } from
|
|
5
|
+
import { BBI } from "./bbi.js";
|
|
6
6
|
export function filterUndef(ts) {
|
|
7
7
|
return ts.filter((t) => !!t);
|
|
8
8
|
}
|
package/esm/bigbed.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"bigbed.js","sourceRoot":"","sources":["../src/bigbed.ts"],"names":[],"mappings":"AAAA,OAAO,qBAAqB,MAAM,+BAA+B,CAAA;AACjE,OAAO,QAAQ,MAAM,WAAW,CAAA;AAChC,OAAO,EAAE,UAAU,EAAE,cAAc,EAAE,KAAK,EAAE,MAAM,MAAM,CAAA;AACxD,OAAO,EAAE,GAAG,EAAE,MAAM,EAAE,MAAM,gBAAgB,CAAA;AAE5C,OAAO,EAAE,GAAG,EAAE,MAAM,
|
|
1
|
+
{"version":3,"file":"bigbed.js","sourceRoot":"","sources":["../src/bigbed.ts"],"names":[],"mappings":"AAAA,OAAO,qBAAqB,MAAM,+BAA+B,CAAA;AACjE,OAAO,QAAQ,MAAM,WAAW,CAAA;AAChC,OAAO,EAAE,UAAU,EAAE,cAAc,EAAE,KAAK,EAAE,MAAM,MAAM,CAAA;AACxD,OAAO,EAAE,GAAG,EAAE,MAAM,EAAE,MAAM,gBAAgB,CAAA;AAE5C,OAAO,EAAE,GAAG,EAAE,MAAM,UAAU,CAAA;AAkB9B,MAAM,UAAU,WAAW,CAAI,EAAqB;IAClD,OAAO,EAAE,CAAC,MAAM,CAAC,CAAC,CAAgB,EAAU,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;AACrD,CAAC;AAED,MAAM,OAAO,MAAO,SAAQ,GAAG;IAA/B;;QACS,qBAAgB,GAAG,IAAI,qBAAqB,CAA0B;YAC3E,KAAK,EAAE,IAAI,QAAQ,CAAC,EAAE,OAAO,EAAE,CAAC,EAAE,CAAC;YACnC,IAAI,EAAE,CAAC,IAAoB,EAAE,MAAoB,EAAE,EAAE,CACnD,IAAI,CAAC,YAAY,CAAC,EAAE,GAAG,IAAI,EAAE,MAAM,EAAE,CAAC;SACzC,CAAC,CAAA;IA4MJ,CAAC;IA1MQ,WAAW,CAAC,OAAuB,EAAE;QAC1C,MAAM,EAAE,MAAM,EAAE,GAAG,IAAI,EAAE,GAAG,IAAI,CAAA;QAChC,OAAO,IAAI,CAAC,gBAAgB,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,MAAM,CAAC,CAAA;IACtE,CAAC;IAED;;OAEG;IACO,KAAK,CAAC,OAAO,CAAC,MAAc,EAAE,IAAqB;QAC3D,OAAO,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,CAAA;IACnC,CAAC;IAED;;;;;;OAMG;IACK,KAAK,CAAC,YAAY,CAAC,IAAoB;QAC7C,MAAM,EAAE,eAAe,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,CAAA;QACtD,MAAM,CAAC,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,EAAE,MAAM,CAAC,eAAe,CAAC,CAAC,CAAA;QAE1D,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;QAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;QACd,iDAAiD;QACjD,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,KAAK,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QAC9C,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;QAC9D,MAAM,IAAI,CAAC,CAAA;QAEX,wCAAwC;QACxC,IAAI,KAAK,KAAK,CAAC,EAAE,CAAC;YAChB,OAAO,EAAE,CAAA;QACX,CAAC;QAED,MAAM,QAAQ,GAAG,EAAE,CAAA;QACnB,MAAM,GAAG,GAAG,QAAQ,GAAG,KAAK,CAAA;QAC5B,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,MAAM,CAAC,UAAU,CAAC,CAAC,CAAA;QAE3D,MAAM,OAAO,GAAG,EAAa,CAAA;QAE7B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;YAClC,MAAM,CAAC,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC,GAAG,QAAQ,CAAC,CAAA;YACvC,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;YAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;YACd,MAAM,IAAI,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC5C,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,UAAU,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAClD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;YAC9D,MAAM,IAAI,CAAC,GAAG,CAAC,CAAA,CAAC,QAAQ;YACxB,MAAM,KAAK,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC7C,OAAO,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,EAAE,MAAM,CAAC,UAAU,CAAC,EAAE,KAAK,EAAE,CAAC,CAAA;QACvE,CAAC;QACD,OAAO,OAAO,CAAA;IAChB,CAAC;IAED;;;;;;;;;OASG;IACK,KAAK,CAAC,sBAAsB,CAClC,IAAY,EACZ,OAAuB,EAAE;QAEzB,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,WAAW,CAAC,IAAI,CAAC,CAAA;QAC5C,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,OAAO,EAAE,CAAA;QACX,CAAC;QACD,MAAM,OAAO,GAAG,IAAI,WAAW,CAAC,MAAM,CAAC,CAAA;QACvC,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,EAAC,KAAK,EAAC,EAAE;YACrC,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;YACxC,MAAM,CAAC,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,EAAE,OAAO,EAAE,IAAI,CAAC,CAAA;YAEhD,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;YAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;YACd,iDAAiD;YACjD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,SAAS,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YACjD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,OAAO,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC/C,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,OAAO,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC/C,MAAM,IAAI,CAAC,CAAA;YACX,iEAAiE;YACjE,MAAM,IAAI,CAAC,CAAA;YAEX,MAAM,WAAW,GAAG,KAAK,EAAE,UAAkB,EAAE,EAAE;gBAC/C,MAAM,GAAG,GAAG,MAAM,CAAC,UAAU,CAAC,CAAA;gBAC9B,MAAM,GAAG,GAAG,CAAC,GAAG,SAAS,GAAG,CAAC,OAAO,GAAG,OAAO,CAAC,CAAA;gBAC/C,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,GAAG,EAAE,IAAI,CAAC,CAAA;gBAClD,MAAM,CAAC,GAAG,MAAM,CAAA;gBAChB,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;gBAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;gBACd,MAAM,QAAQ,GAAG,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC,CAAA;gBACzC,MAAM,IAAI,CAAC,CAAA,CAAC,QAAQ;gBACpB,MAAM,GAAG,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;gBAC3C,MAAM,IAAI,CAAC,CAAA;gBACX,MAAM,IAAI,GAAG,EAAE,CAAA;gBACf,IAAI,QAAQ,KAAK,CAAC,EAAE,CAAC;oBACnB,MAAM,QAAQ,GAAG,EAAE,CAAA;oBACnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC;wBAC7B,MAAM,GAAG,GAAG,OAAO;6BAChB,MAAM,CAAC,CAAC,CAAC,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,CAAC;6BAC5C,UAAU,CAAC,IAAI,EAAE,EAAE,CAAC,CAAA;wBACvB,MAAM,IAAI,OAAO,CAAA;wBACjB,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;wBAC9D,MAAM,IAAI,CAAC,CAAA;wBACX,QAAQ,CAAC,IAAI,CAAC;4BACZ,GAAG;4BACH,MAAM,EAAE,UAAU;yBACnB,CAAC,CAAA;oBACJ,CAAC;oBAED,IAAI,UAAU,GAAG,CAAC,CAAA;oBAClB,KAAK,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,IAAI,QAAQ,EAAE,CAAC;wBACvC,IAAI,IAAI,CAAC,aAAa,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,UAAU,EAAE,CAAC;4BAC9C,OAAO,WAAW,CAAC,UAAU,CAAC,CAAA;wBAChC,CAAC;wB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|
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
// from https://github.com/yume-chan/ya-webadb/blob/main/libraries/dataview-bigint-polyfill
|
|
2
2
|
// license:MIT
|
|
3
3
|
// needed for browsers including safari 14
|
|
4
|
-
import { getBigInt64, getBigUint64 } from
|
|
4
|
+
import { getBigInt64, getBigUint64 } from "./pure.js";
|
|
5
5
|
if (!('getBigInt64' in DataView)) {
|
|
6
6
|
DataView.prototype.getBigInt64 = function (byteOffset, littleEndian) {
|
|
7
7
|
return getBigInt64(this, byteOffset, littleEndian);
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"polyfill.js","sourceRoot":"","sources":["../../src/bigint-polyfill/polyfill.ts"],"names":[],"mappings":"AAAA,2FAA2F;AAC3F,cAAc;AACd,0CAA0C;AAC1C,OAAO,EAAE,WAAW,EAAE,YAAY,EAAE,MAAM,
|
|
1
|
+
{"version":3,"file":"polyfill.js","sourceRoot":"","sources":["../../src/bigint-polyfill/polyfill.ts"],"names":[],"mappings":"AAAA,2FAA2F;AAC3F,cAAc;AACd,0CAA0C;AAC1C,OAAO,EAAE,WAAW,EAAE,YAAY,EAAE,MAAM,WAAW,CAAA;AAErD,IAAI,CAAC,CAAC,aAAa,IAAI,QAAQ,CAAC,EAAE,CAAC;IACjC,QAAQ,CAAC,SAAS,CAAC,WAAW,GAAG,UAAU,UAAU,EAAE,YAAY;QACjE,OAAO,WAAW,CAAC,IAAI,EAAE,UAAU,EAAE,YAAY,CAAC,CAAA;IACpD,CAAC,CAAA;AACH,CAAC;AAED,IAAI,CAAC,CAAC,cAAc,IAAI,QAAQ,CAAC,EAAE,CAAC;IAClC,QAAQ,CAAC,SAAS,CAAC,YAAY,GAAG,UAAU,UAAU,EAAE,YAAY;QAClE,OAAO,YAAY,CAAC,IAAI,EAAE,UAAU,EAAE,YAAY,CAAC,CAAA;IACrD,CAAC,CAAA;AACH,CAAC"}
|
package/esm/bigwig.d.ts
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
|
-
import { BBI } from './bbi';
|
|
2
|
-
import { BlockView } from './block-view';
|
|
3
|
-
import type { RequestOptions } from './types';
|
|
1
|
+
import { BBI } from './bbi.ts';
|
|
2
|
+
import { BlockView } from './block-view.ts';
|
|
3
|
+
import type { RequestOptions } from './types.ts';
|
|
4
4
|
export declare class BigWig extends BBI {
|
|
5
5
|
/**
|
|
6
6
|
* Retrieves a BlockView of a specific zoomLevel
|
package/esm/bigwig.js
CHANGED
package/esm/bigwig.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"bigwig.js","sourceRoot":"","sources":["../src/bigwig.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,GAAG,EAAE,MAAM,
|
|
1
|
+
{"version":3,"file":"bigwig.js","sourceRoot":"","sources":["../src/bigwig.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,GAAG,EAAE,MAAM,UAAU,CAAA;AAC9B,OAAO,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAA;AAI3C,MAAM,OAAO,MAAO,SAAQ,GAAG;IAC7B;;;;;;;OAOG;IACO,KAAK,CAAC,OAAO,CAAC,KAAa,EAAE,IAAoB;QACzD,MAAM,EAAE,UAAU,EAAE,UAAU,EAAE,iBAAiB,EAAE,GACjD,MAAM,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,CAAA;QAC5B,MAAM,UAAU,GAAG,CAAC,GAAG,KAAK,CAAA;QAC5B,MAAM,QAAQ,GAAG,UAAU,CAAC,MAAM,GAAG,CAAC,CAAA;QAEtC,KAAK,IAAI,CAAC,GAAG,QAAQ,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;YACtC,MAAM,EAAE,GAAG,UAAU,CAAC,CAAC,CAAC,CAAA;YACxB,uEAAuE;YACvE,IAAI,EAAE,IAAI,EAAE,CAAC,cAAc,IAAI,CAAC,GAAG,UAAU,EAAE,CAAC;gBAC9C,OAAO,IAAI,SAAS,CAClB,IAAI,CAAC,GAAG,EACR,UAAU,EACV,EAAE,CAAC,WAAW,EACd,iBAAiB,GAAG,CAAC,EACrB,SAAS,CACV,CAAA;YACH,CAAC;QACH,CAAC;QACD,OAAO,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,CAAA;IACnC,CAAC;CACF"}
|
package/esm/block-view.d.ts
CHANGED
package/esm/block-view.js
CHANGED
|
@@ -1,8 +1,8 @@
|
|
|
1
1
|
import AbortablePromiseCache from '@gmod/abortable-promise-cache';
|
|
2
2
|
import QuickLRU from 'quick-lru';
|
|
3
|
-
import Range from
|
|
4
|
-
import { unzip } from
|
|
5
|
-
import { checkAbortSignal, groupBlocks } from
|
|
3
|
+
import Range from "./range.js";
|
|
4
|
+
import { unzip } from "./unzip.js";
|
|
5
|
+
import { checkAbortSignal, groupBlocks } from "./util.js";
|
|
6
6
|
const decoder = typeof TextDecoder !== 'undefined' ? new TextDecoder('utf8') : undefined;
|
|
7
7
|
function coordFilter(s1, e1, s2, e2) {
|
|
8
8
|
return s1 < e2 && e1 >= s2;
|
package/esm/block-view.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
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1
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+
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AI,CAAC,CAAA;QACX,MAAM,SAAS,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QAClD,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,KAAK,GAAG,IAAI,KAAK,CAAC,SAAS,CAAC,CAAA;QAClC,QAAQ,SAAS,EAAE,CAAC;YAClB,KAAK,CAAC,CAAC,CAAC,CAAC;gBACP,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,EAAE,CAAC,EAAE,EAAE,CAAC;oBACnC,MAAM,KAAK,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;oBAC7C,MAAM,IAAI,CAAC,CAAA;oBACX,MAAM,GAAG,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;oBAC3C,MAAM,IAAI,CAAC,CAAA;oBACX,MAAM,KAAK,GAAG,QAAQ,CAAC,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;oBAC/C,MAAM,IAAI,CAAC,CAAA;oBACX,KAAK,CAAC,CAAC,CAAC,GAAG;wBACT,KAAK;wBACL,GAAG;wBACH,KAAK;qBACN,CAAA;gBACH,CAAC;gBACD,MAAK;YACP,CAAC;YACD,KAAK,CAAC,CAAC,CAAC,CAAC;gBACP,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,EAAE,CAAC,EAAE,EAAE,CAAC;oBACnC,MAAM,KAAK,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;oBAC7C,MAAM,IAAI,CAAC,CAAA;oBACX,MAAM,KAAK,GAAG,QAAQ,CAAC,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;oBAC/C,MAAM,IAAI,CAAC,CAAA;oBACX,KAAK,CAAC,CAAC,CAAC,GAAG;wBACT,KAAK;wBACL,KAAK;wBACL,GAAG,EAAE,KAAK,GAAG,QAAQ;qBACtB,CAAA;gBACH,CAAC;gBACD,MAAK;YACP,CAAC;YACD,KAAK,CAAC,CAAC,CAAC,CAAC;gBACP,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,EAAE,CAAC,EAAE,EAAE,CAAC;oBACnC,MAAM,KAAK,GAAG,QAAQ,CAAC,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;oBAC/C,MAAM,IAAI,CAAC,CAAA;oBACX,MAAM,KAAK,GAAG,UAAU,GAAG,CAAC,GAAG,QAAQ,CAAA;oBACvC,KAAK,CAAC,CAAC,CAAC,GAAG;wBACT,KAAK;wBACL,KAAK;wBACL,GAAG,EAAE,KAAK,GAAG,QAAQ;qBACtB,CAAA;gBACH,CAAC;gBACD,MAAK;YACP,CAAC;QACH,CAAC;QAED,OAAO,GAAG;YACR,CAAC,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,WAAW,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,KAAK,EAAE,GAAG,CAAC,GAAG,CAAC,CAAC;YACpE,CAAC,CAAC,KAAK,CAAA;IACX,CAAC;IAEM,KAAK,CAAC,YAAY,CACvB,QAA6B,EAC7B,MAA4C,EAC5C,OAAgB,EAAE;QAElB,IAAI,CAAC;YACH,MAAM,EAAE,SAAS,EAAE,YAAY,EAAE,GAAG,IAAI,CAAA;YACxC,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,GAAG,IAAI,CAAA;YAChC,MAAM,kBAAkB,GAAG,WAAW,CAAC,MAAM,CAAC,CAAA;YAC9C,gBAAgB,CAAC,MAAM,CAAC,CAAA;YACxB,MAAM,OAAO,CAAC,GAAG,CACf,kBAAkB,CAAC,GAAG,CAAC,KAAK,EAAC,UAAU,EAAC,EAAE;gBACxC,gBAAgB,CAAC,MAAM,CAAC,CAAA;gBACxB,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,GAAG,UAAU,CAAA;gBACrC,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,YAAY,CAAC,GAAG,CACtC,GAAG,MAAM,IAAI,MAAM,EAAE,EACrB,UAAU,EACV,MAAM,CACP,CAAA;gBACD,KAAK,MAAM,KAAK,IAAI,UAAU,CAAC,MAAM,EAAE,CAAC;oBACtC,gBAAgB,CAAC,MAAM,CAAC,CAAA;oBACxB,IAAI,UAAU,GAAG,IAAI,CAAC,QAAQ,CAC5B,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,UAAU,CAAC,MAAM,CAAC,CACjD,CAAA;oBACD,IAAI,YAAY,EAAE,CAAC;wBACjB,UAAU,GAAG,KAAK,CAAC,UAAU,CAAC,CAAA;oBAChC,CAAC;oBACD,gBAAgB,CAAC,MAAM,CAAC,CAAA;oBAExB,QAAQ,SAAS,EAAE,CAAC;wBAClB,KAAK,SAAS,CAAC,CAAC,CAAC;4BACf,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,iBAAiB,CAAC,UAAU,EAAE,CAAC,EAAE,OAAO,CAAC,CAAC,CAAA;4BAC7D,MAAK;wBACP,CAAC;wBACD,KAAK,QAAQ,CAAC,CAAC,CAAC;4BACd,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,gBAAgB,CAAC,UAAU,EAAE,CAAC,EAAE,OAAO,CAAC,CAAC,CAAA;4BAC5D,MAAK;wBACP,CAAC;wBACD,KAAK,QAAQ,CAAC,CAAC,CAAC;4BACd,QAAQ,CAAC,IAAI,CACX,IAAI,CAAC,gBAAgB,CACnB,UAAU,EACV,CAAC,EACD,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,CAAC,EAC/B,OAAO,CACR,CACF,CAAA;4BACD,MAAK;wBACP,CAAC;wBACD,OAAO,CAAC,CAAC,CAAC;4BACR,OAAO,CAAC,IAAI,CAAC,8BAA8B,SAAS,EAAE,CAAC,CAAA;wBACzD,CAAC;oBACH,CAAC;gBACH,CAAC;YACH,CAAC,CAAC,CACH,CAAA;YACD,QAAQ,CAAC,QAAQ,EAAE,CAAA;QACrB,CAAC;QAAC,OAAO,CAAC,EAAE,CAAC;YACX,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;QACnB,CAAC;IACH,CAAC;CACF"}
|
package/esm/index.d.ts
CHANGED
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import './bigint-polyfill/polyfill';
|
|
2
|
-
export { BigWig } from './bigwig';
|
|
3
|
-
export { BigBed } from './bigbed';
|
|
4
|
-
export type { BigWigHeader, Feature, RequestOptions } from './types';
|
|
1
|
+
import './bigint-polyfill/polyfill.ts';
|
|
2
|
+
export { BigWig } from './bigwig.ts';
|
|
3
|
+
export { BigBed } from './bigbed.ts';
|
|
4
|
+
export type { BigWigHeader, Feature, RequestOptions } from './types.ts';
|
package/esm/index.js
CHANGED
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import
|
|
2
|
-
export { BigWig } from
|
|
3
|
-
export { BigBed } from
|
|
1
|
+
import "./bigint-polyfill/polyfill.js";
|
|
2
|
+
export { BigWig } from "./bigwig.js";
|
|
3
|
+
export { BigBed } from "./bigbed.js";
|
|
4
4
|
//# sourceMappingURL=index.js.map
|
package/esm/index.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,+BAA+B,CAAA;AACtC,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AACpC,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA"}
|
package/package.json
CHANGED
|
@@ -1,11 +1,19 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@gmod/bbi",
|
|
3
|
-
"version": "
|
|
3
|
+
"version": "7.0.1",
|
|
4
4
|
"description": "Parser for BigWig/BigBed files",
|
|
5
5
|
"license": "MIT",
|
|
6
6
|
"repository": "GMOD/bbi-js",
|
|
7
|
-
"
|
|
8
|
-
"
|
|
7
|
+
"type": "module",
|
|
8
|
+
"types": "./dist/index.d.ts",
|
|
9
|
+
"exports": {
|
|
10
|
+
"import": {
|
|
11
|
+
"import": "./esm/index.js"
|
|
12
|
+
},
|
|
13
|
+
"require": {
|
|
14
|
+
"require": "./dist/index.js"
|
|
15
|
+
}
|
|
16
|
+
},
|
|
9
17
|
"author": {
|
|
10
18
|
"name": "Colin Diesh",
|
|
11
19
|
"email": "colin.diesh@gmail.com",
|
|
@@ -41,22 +49,22 @@
|
|
|
41
49
|
"genomics"
|
|
42
50
|
],
|
|
43
51
|
"dependencies": {
|
|
44
|
-
"@gmod/abortable-promise-cache": "^
|
|
45
|
-
"generic-filehandle2": "^
|
|
52
|
+
"@gmod/abortable-promise-cache": "^3.0.1",
|
|
53
|
+
"generic-filehandle2": "^2.0.1",
|
|
46
54
|
"pako": "^2.0.0",
|
|
47
55
|
"quick-lru": "^4.0.0",
|
|
48
56
|
"rxjs": "^7.8.0"
|
|
49
57
|
},
|
|
50
58
|
"devDependencies": {
|
|
51
59
|
"@gmod/bed": "^2.1.2",
|
|
52
|
-
"@types/node": "^
|
|
60
|
+
"@types/node": "^22.15.3",
|
|
53
61
|
"@types/pako": "^2.0.0",
|
|
54
62
|
"@typescript-eslint/eslint-plugin": "^8.4.0",
|
|
55
63
|
"@typescript-eslint/parser": "^8.4.0",
|
|
56
64
|
"@vitest/coverage-v8": "^3.0.1",
|
|
57
65
|
"eslint": "^9.9.1",
|
|
58
66
|
"eslint-plugin-import": "^2.31.0",
|
|
59
|
-
"eslint-plugin-unicorn": "^
|
|
67
|
+
"eslint-plugin-unicorn": "^59.0.0",
|
|
60
68
|
"prettier": "^3.2.5",
|
|
61
69
|
"rimraf": "^6.0.1",
|
|
62
70
|
"standard-changelog": "^6.0.0",
|
package/src/bbi.ts
CHANGED
|
@@ -2,7 +2,7 @@ import { LocalFile, RemoteFile } from 'generic-filehandle2'
|
|
|
2
2
|
import { Observable, firstValueFrom } from 'rxjs'
|
|
3
3
|
import { toArray } from 'rxjs/operators'
|
|
4
4
|
|
|
5
|
-
import { BlockView } from './block-view'
|
|
5
|
+
import { BlockView } from './block-view.ts'
|
|
6
6
|
|
|
7
7
|
import type {
|
|
8
8
|
BigWigHeader,
|
|
@@ -13,7 +13,7 @@ import type {
|
|
|
13
13
|
RequestOptions,
|
|
14
14
|
Statistics,
|
|
15
15
|
ZoomLevel,
|
|
16
|
-
} from './types'
|
|
16
|
+
} from './types.ts'
|
|
17
17
|
import type { GenericFilehandle } from 'generic-filehandle2'
|
|
18
18
|
|
|
19
19
|
const BIG_WIG_MAGIC = -2003829722
|
package/src/bigbed.ts
CHANGED
|
@@ -3,9 +3,9 @@ import QuickLRU from 'quick-lru'
|
|
|
3
3
|
import { Observable, firstValueFrom, merge } from 'rxjs'
|
|
4
4
|
import { map, reduce } from 'rxjs/operators'
|
|
5
5
|
|
|
6
|
-
import { BBI } from './bbi'
|
|
6
|
+
import { BBI } from './bbi.ts'
|
|
7
7
|
|
|
8
|
-
import type { Feature, RequestOptions } from './types'
|
|
8
|
+
import type { Feature, RequestOptions } from './types.ts'
|
|
9
9
|
|
|
10
10
|
interface Loc {
|
|
11
11
|
key: string
|
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
// from https://github.com/yume-chan/ya-webadb/blob/main/libraries/dataview-bigint-polyfill
|
|
2
2
|
// license:MIT
|
|
3
3
|
// needed for browsers including safari 14
|
|
4
|
-
import { getBigInt64, getBigUint64 } from './pure'
|
|
4
|
+
import { getBigInt64, getBigUint64 } from './pure.ts'
|
|
5
5
|
|
|
6
6
|
if (!('getBigInt64' in DataView)) {
|
|
7
7
|
DataView.prototype.getBigInt64 = function (byteOffset, littleEndian) {
|
package/src/bigwig.ts
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
|
-
import { BBI } from './bbi'
|
|
2
|
-
import { BlockView } from './block-view'
|
|
1
|
+
import { BBI } from './bbi.ts'
|
|
2
|
+
import { BlockView } from './block-view.ts'
|
|
3
3
|
|
|
4
|
-
import type { RequestOptions } from './types'
|
|
4
|
+
import type { RequestOptions } from './types.ts'
|
|
5
5
|
|
|
6
6
|
export class BigWig extends BBI {
|
|
7
7
|
/**
|
package/src/block-view.ts
CHANGED
|
@@ -1,11 +1,11 @@
|
|
|
1
1
|
import AbortablePromiseCache from '@gmod/abortable-promise-cache'
|
|
2
2
|
import QuickLRU from 'quick-lru'
|
|
3
3
|
|
|
4
|
-
import Range from './range'
|
|
5
|
-
import { unzip } from './unzip'
|
|
6
|
-
import { checkAbortSignal, groupBlocks } from './util'
|
|
4
|
+
import Range from './range.ts'
|
|
5
|
+
import { unzip } from './unzip.ts'
|
|
6
|
+
import { checkAbortSignal, groupBlocks } from './util.ts'
|
|
7
7
|
|
|
8
|
-
import type { Feature } from './types'
|
|
8
|
+
import type { Feature } from './types.ts'
|
|
9
9
|
import type { GenericFilehandle } from 'generic-filehandle2'
|
|
10
10
|
import type { Observer } from 'rxjs'
|
|
11
11
|
|
package/src/index.ts
CHANGED
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import './bigint-polyfill/polyfill'
|
|
2
|
-
export { BigWig } from './bigwig'
|
|
3
|
-
export { BigBed } from './bigbed'
|
|
4
|
-
export type { BigWigHeader, Feature, RequestOptions } from './types'
|
|
1
|
+
import './bigint-polyfill/polyfill.ts'
|
|
2
|
+
export { BigWig } from './bigwig.ts'
|
|
3
|
+
export { BigBed } from './bigbed.ts'
|
|
4
|
+
export type { BigWigHeader, Feature, RequestOptions } from './types.ts'
|