@gmod/bbi 6.0.2 → 6.0.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +4 -0
- package/dist/bbi.js +3 -1
- package/dist/bbi.js.map +1 -1
- package/dist/bigbed.js +5 -3
- package/dist/bigbed.js.map +1 -1
- package/esm/bbi.js +3 -1
- package/esm/bbi.js.map +1 -1
- package/esm/bigbed.js +5 -3
- package/esm/bigbed.js.map +1 -1
- package/package.json +2 -2
- package/src/bbi.ts +4 -1
- package/src/bigbed.ts +6 -4
package/CHANGELOG.md
CHANGED
package/dist/bbi.js
CHANGED
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@@ -189,6 +189,9 @@ class BBI {
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}
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const isLeafNode = dataView.getUint8(offset);
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offset += 2; //skip 1
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+
if (offset >= b.length) {
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return;
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+
}
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const cnt = dataView.getUint16(offset, true);
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offset += 2;
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if (isLeafNode) {
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@@ -210,7 +213,6 @@ class BBI {
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}
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}
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else {
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-
// parse index node
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const nextNodes = [];
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for (let n = 0; n < cnt; n++) {
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offset += keySize;
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package/dist/bbi.js.map
CHANGED
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@@ -1 +1 @@
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1
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-
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+
{"version":3,"file":"bbi.js","sourceRoot":"","sources":["../src/bbi.ts"],"names":[],"mappings":";;;AAAA,6DAA2D;AAC3D,+BAAiD;AACjD,8CAAwC;AAExC,6CAAwC;AAcxC,MAAM,aAAa,GAAG,CAAC,UAAU,CAAA;AACjC,MAAM,aAAa,GAAG,CAAC,UAAU,CAAA;AAEjC,MAAsB,GAAG;IAOhB,SAAS,CAAC,IAAqB;QACpC,IAAI,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC;YAClB,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAU,EAAE,EAAE;gBACxD,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;gBACxB,MAAM,CAAC,CAAA;YACT,CAAC,CAAC,CAAA;QACJ,CAAC;QACD,OAAO,IAAI,CAAC,OAAO,CAAA;IACrB,CAAC;IAED;;;;;;;;;OASG;IACH,YAAmB,IAKlB;QACC,MAAM,EAAE,UAAU,EAAE,aAAa,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,IAAI,EAAE,GAAG,EAAE,GAAG,IAAI,CAAA;QAC9D,IAAI,CAAC,aAAa,GAAG,aAAa,CAAA;QAClC,IAAI,UAAU,EAAE,CAAC;YACf,IAAI,CAAC,GAAG,GAAG,UAAU,CAAA;QACvB,CAAC;aAAM,IAAI,GAAG,EAAE,CAAC;YACf,IAAI,CAAC,GAAG,GAAG,IAAI,gCAAU,CAAC,GAAG,CAAC,CAAA;QAChC,CAAC;aAAM,IAAI,IAAI,EAAE,CAAC;YAChB,IAAI,CAAC,GAAG,GAAG,IAAI,+BAAS,CAAC,IAAI,CAAC,CAAA;QAChC,CAAC;aAAM,CAAC;YACN,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAA;QAClC,CAAC;IACH,CAAC;IAEO,KAAK,CAAC,UAAU,CAAC,IAAqB;QAC5C,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,cAAc,CAAC,IAAI,CAAC,CAAA;QAC9C,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,cAAc,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QACtD,OAAO;YACL,GAAG,MAAM;YACT,GAAG,MAAM;SACV,CAAA;IACH,CAAC;IAEO,KAAK,CAAC,cAAc,CAC1B,IAAqB,EACrB,WAAW,GAAG,IAAI;QAElB,MAAM,CAAC,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,WAAW,EAAE,CAAC,EAAE,IAAI,CAAC,CAAA;QACnD,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;QAE/D,MAAM,EAAE,GAAG,QAAQ,CAAC,QAAQ,CAAC,CAAC,EAAE,IAAI,CAAC,CAAA;QACrC,IAAI,EAAE,KAAK,aAAa,IAAI,EAAE,KAAK,aAAa,EAAE,CAAC;YACjD,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAA;QAC7C,CAAC;QACD,IAAI,MAAM,GAAG,CAAC,CAAA;QACd,MAAM,KAAK,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QAC7C,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,OAAO,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QAChD,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,aAAa,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QACtD,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,eAAe,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;QACnE,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,kBAAkB,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;QACtE,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,mBAAmB,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;QACvE,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,UAAU,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QACnD,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,iBAAiB,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QAC1D,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,QAAQ,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;QAC5D,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,kBAAkB,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;QACtE,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,iBAAiB,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QAC1D,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,eAAe,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;QACnE,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,UAAU,GAAG,EAAiB,CAAA;QACpC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,aAAa,EAAE,CAAC,EAAE,EAAE,CAAC;YACvC,MAAM,cAAc,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YACvD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,QAAQ,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YACjD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;YAC9D,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,WAAW,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;YAC/D,MAAM,IAAI,CAAC,CAAA;YACX,UAAU,CAAC,IAAI,CAAC;gBACd,cAAc;gBACd,QAAQ;gBACR,UAAU;gBACV,WAAW;aACZ,CAAC,CAAA;QACJ,CAAC;QAED,MAAM,QAAQ,GAAG,KAAK,KAAK,aAAa,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAA;QAE9D,mDAAmD;QACnD,4CAA4C;QAC5C,IAAI,QAAQ,GAAG,WAAW,IAAI,kBAAkB,GAAG,WAAW,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC;YACvE,OAAO,IAAI,CAAC,cAAc,CAAC,IAAI,EAAE,WAAW,GAAG,CAAC,CAAC,CAAA;QACnD,CAAC;QAED,IAAI,YAAwB,CAAA;QAC5B,IAAI,kBAAkB,EAAE,CAAC;YACvB,MAAM,EAAE,GAAG,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,kBAAkB,CAAC,CAAC,CAAA;YACjD,IAAI,MAAM,GAAG,CAAC,CAAA;YACd,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,EAAE,CAAC,MAAM,EAAE,EAAE,CAAC,UAAU,EAAE,EAAE,CAAC,MAAM,CAAC,CAAA;YAClE,MAAM,YAAY,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;YAChE,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,QAAQ,GAAG,QAAQ,CAAC,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAClD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,QAAQ,GAAG,QAAQ,CAAC,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAClD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,QAAQ,GAAG,QAAQ,CAAC,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAClD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,eAAe,GAAG,QAAQ,CAAC,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YACzD,MAAM,IAAI,CAAC,CAAA;YAEX,YAAY,GAAG;gBACb,QAAQ;gBACR,QAAQ;gBACR,QAAQ;gBACR,eAAe;gBACf,YAAY;aACb,CAAA;QACH,CAAC;aAAM,CAAC;YACN,MAAM,IAAI,KAAK,CAAC,UAAU,CAAC,CAAA;QAC7B,CAAC;QACD,MAAM,OAAO,GAAG,IAAI,WAAW,CAAC,MAAM,CAAC,CAAA;QAEvC,OAAO;YACL,UAAU;YACV,KAAK;YACL,eAAe;YACf,aAAa;YACb,UAAU;YACV,YAAY;YACZ,iBAAiB;YACjB,iBAAiB;YACjB,QAAQ;YACR,eAAe;YACf,kBAAkB;YAClB,kBAAkB;YAClB,mBAAmB;YACnB,QAAQ;YACR,OAAO;YACP,OAAO,EAAE,QAAQ;gBACf,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,QAAQ,CAAC,QAAQ,EAAE,CAAC,CAAC,OAAO,CAAC,CAAC,EAAE,QAAQ,CAAC,CAAC,CAAC;gBAC9D,CAAC,CAAC,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|
package/dist/bigbed.js
CHANGED
|
@@ -159,14 +159,16 @@ class BigBed extends bbi_1.BBI {
|
|
|
159
159
|
}
|
|
160
160
|
for (const n of keys) {
|
|
161
161
|
if (n.key === name) {
|
|
162
|
-
return {
|
|
162
|
+
return {
|
|
163
|
+
...n,
|
|
164
|
+
field,
|
|
165
|
+
};
|
|
163
166
|
}
|
|
164
167
|
}
|
|
165
168
|
return undefined;
|
|
166
169
|
}
|
|
167
170
|
};
|
|
168
|
-
|
|
169
|
-
return bptReadNode(offset2 + rootNodeOffset);
|
|
171
|
+
return bptReadNode(offset2 + 32);
|
|
170
172
|
});
|
|
171
173
|
return filterUndef(await Promise.all(locs));
|
|
172
174
|
}
|
package/dist/bigbed.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"bigbed.js","sourceRoot":"","sources":["../src/bigbed.ts"],"names":[],"mappings":";;;;;;AAuBA,kCAEC;AAzBD,4FAAiE;AACjE,0DAAgC;AAChC,+BAAwD;AACxD,8CAA4C;AAE5C,+BAA2B;AAkB3B,SAAgB,WAAW,CAAI,EAAqB;IAClD,OAAO,EAAE,CAAC,MAAM,CAAC,CAAC,CAAgB,EAAU,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;AACrD,CAAC;AAED,MAAa,MAAO,SAAQ,SAAG;IAA/B;;QACS,qBAAgB,GAAG,IAAI,iCAAqB,CAA0B;YAC3E,KAAK,EAAE,IAAI,mBAAQ,CAAC,EAAE,OAAO,EAAE,CAAC,EAAE,CAAC;YACnC,IAAI,EAAE,CAAC,IAAoB,EAAE,MAAoB,EAAE,EAAE,CACnD,IAAI,CAAC,YAAY,CAAC,EAAE,GAAG,IAAI,EAAE,MAAM,EAAE,CAAC;SACzC,CAAC,CAAA;
|
|
1
|
+
{"version":3,"file":"bigbed.js","sourceRoot":"","sources":["../src/bigbed.ts"],"names":[],"mappings":";;;;;;AAuBA,kCAEC;AAzBD,4FAAiE;AACjE,0DAAgC;AAChC,+BAAwD;AACxD,8CAA4C;AAE5C,+BAA2B;AAkB3B,SAAgB,WAAW,CAAI,EAAqB;IAClD,OAAO,EAAE,CAAC,MAAM,CAAC,CAAC,CAAgB,EAAU,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;AACrD,CAAC;AAED,MAAa,MAAO,SAAQ,SAAG;IAA/B;;QACS,qBAAgB,GAAG,IAAI,iCAAqB,CAA0B;YAC3E,KAAK,EAAE,IAAI,mBAAQ,CAAC,EAAE,OAAO,EAAE,CAAC,EAAE,CAAC;YACnC,IAAI,EAAE,CAAC,IAAoB,EAAE,MAAoB,EAAE,EAAE,CACnD,IAAI,CAAC,YAAY,CAAC,EAAE,GAAG,IAAI,EAAE,MAAM,EAAE,CAAC;SACzC,CAAC,CAAA;IA4MJ,CAAC;IA1MQ,WAAW,CAAC,OAAuB,EAAE;QAC1C,MAAM,EAAE,MAAM,EAAE,GAAG,IAAI,EAAE,GAAG,IAAI,CAAA;QAChC,OAAO,IAAI,CAAC,gBAAgB,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,MAAM,CAAC,CAAA;IACtE,CAAC;IAED;;OAEG;IACO,KAAK,CAAC,OAAO,CAAC,MAAc,EAAE,IAAqB;QAC3D,OAAO,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,CAAA;IACnC,CAAC;IAED;;;;;;OAMG;IACK,KAAK,CAAC,YAAY,CAAC,IAAoB;QAC7C,MAAM,EAAE,eAAe,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,CAAA;QACtD,MAAM,CAAC,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,EAAE,MAAM,CAAC,eAAe,CAAC,CAAC,CAAA;QAE1D,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;QAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;QACd,iDAAiD;QACjD,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,KAAK,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QAC9C,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;QAC9D,MAAM,IAAI,CAAC,CAAA;QAEX,wCAAwC;QACxC,IAAI,KAAK,KAAK,CAAC,EAAE,CAAC;YAChB,OAAO,EAAE,CAAA;QACX,CAAC;QAED,MAAM,QAAQ,GAAG,EAAE,CAAA;QACnB,MAAM,GAAG,GAAG,QAAQ,GAAG,KAAK,CAAA;QAC5B,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,MAAM,CAAC,UAAU,CAAC,CAAC,CAAA;QAE3D,MAAM,OAAO,GAAG,EAAa,CAAA;QAE7B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;YAClC,MAAM,CAAC,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC,GAAG,QAAQ,CAAC,CAAA;YACvC,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;YAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;YACd,MAAM,IAAI,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC5C,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,UAAU,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAClD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;YAC9D,MAAM,IAAI,CAAC,GAAG,CAAC,CAAA,CAAC,QAAQ;YACxB,MAAM,KAAK,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC7C,OAAO,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,EAAE,MAAM,CAAC,UAAU,CAAC,EAAE,KAAK,EAAE,CAAC,CAAA;QACvE,CAAC;QACD,OAAO,OAAO,CAAA;IAChB,CAAC;IAED;;;;;;;;;OASG;IACK,KAAK,CAAC,sBAAsB,CAClC,IAAY,EACZ,OAAuB,EAAE;QAEzB,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,WAAW,CAAC,IAAI,CAAC,CAAA;QAC5C,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,OAAO,EAAE,CAAA;QACX,CAAC;QACD,MAAM,OAAO,GAAG,IAAI,WAAW,CAAC,MAAM,CAAC,CAAA;QACvC,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,EAAC,KAAK,EAAC,EAAE;YACrC,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;YACxC,MAAM,CAAC,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,EAAE,OAAO,EAAE,IAAI,CAAC,CAAA;YAEhD,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;YAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;YACd,iDAAiD;YACjD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,SAAS,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YACjD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,OAAO,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC/C,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,OAAO,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC/C,MAAM,IAAI,CAAC,CAAA;YACX,iEAAiE;YACjE,MAAM,IAAI,CAAC,CAAA;YAEX,MAAM,WAAW,GAAG,KAAK,EAAE,UAAkB,EAAE,EAAE;gBAC/C,MAAM,GAAG,GAAG,MAAM,CAAC,UAAU,CAAC,CAAA;gBAC9B,MAAM,GAAG,GAAG,CAAC,GAAG,SAAS,GAAG,CAAC,OAAO,GAAG,OAAO,CAAC,CAAA;gBAC/C,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,GAAG,EAAE,IAAI,CAAC,CAAA;gBAClD,MAAM,CAAC,GAAG,MAAM,CAAA;gBAChB,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;gBAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;gBACd,MAAM,QAAQ,GAAG,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC,CAAA;gBACzC,MAAM,IAAI,CAAC,CAAA,CAAC,QAAQ;gBACpB,MAAM,GAAG,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;gBAC3C,MAAM,IAAI,CAAC,CAAA;gBACX,MAAM,IAAI,GAAG,EAAE,CAAA;gBACf,IAAI,QAAQ,KAAK,CAAC,EAAE,CAAC;oBACnB,MAAM,QAAQ,GAAG,EAAE,CAAA;oBACnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC;wBAC7B,MAAM,GAAG,GAAG,OAAO;6BAChB,MAAM,CAAC,CAAC,CAAC,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,CAAC;6BAC5C,UAAU,CAAC,IAAI,EAAE,EAAE,CAAC,CAAA;wBACvB,MAAM,IAAI,OAAO,CAAA;wBACjB,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;wBAC9D,MAAM,IAAI,CAAC,CAAA;wBACX,QAAQ,CAAC,IAAI,CAAC;4BACZ,GAAG;4BACH,MAAM,EAAE,UAAU;yBACnB,CAAC,CAAA;oBACJ,CAAC;oBAED,IAAI,UAAU,GAAG,CAAC,CAAA;oBAClB,KAAK,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,IAAI,QAAQ,EAAE,CAAC;wBACvC,IAAI,IAAI,CAAC,aAAa,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,UAAU,EAAE,CAAC;4BAC9C,OAAO,WAAW,CAAC,UAAU,CAAC,CAAA;wBAChC,CAAC;wBACD,UAAU,GAAG,MAAM,CAAA;oBACrB,CAAC;oBACD,OAAO,WAAW,CAAC,UAAU,CAAC,CAAA;gBAChC,CAAC;qBAAM,IAAI,QAAQ,KAAK,CAAC,EAAE,CAAC;oBAC1B,KAAK,IAAI,CAAC,GAA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|
package/esm/bbi.js
CHANGED
|
@@ -186,6 +186,9 @@ export class BBI {
|
|
|
186
186
|
}
|
|
187
187
|
const isLeafNode = dataView.getUint8(offset);
|
|
188
188
|
offset += 2; //skip 1
|
|
189
|
+
if (offset >= b.length) {
|
|
190
|
+
return;
|
|
191
|
+
}
|
|
189
192
|
const cnt = dataView.getUint16(offset, true);
|
|
190
193
|
offset += 2;
|
|
191
194
|
if (isLeafNode) {
|
|
@@ -207,7 +210,6 @@ export class BBI {
|
|
|
207
210
|
}
|
|
208
211
|
}
|
|
209
212
|
else {
|
|
210
|
-
// parse index node
|
|
211
213
|
const nextNodes = [];
|
|
212
214
|
for (let n = 0; n < cnt; n++) {
|
|
213
215
|
offset += keySize;
|
package/esm/bbi.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
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|
package/esm/bigbed.js
CHANGED
|
@@ -152,14 +152,16 @@ export class BigBed extends BBI {
|
|
|
152
152
|
}
|
|
153
153
|
for (const n of keys) {
|
|
154
154
|
if (n.key === name) {
|
|
155
|
-
return {
|
|
155
|
+
return {
|
|
156
|
+
...n,
|
|
157
|
+
field,
|
|
158
|
+
};
|
|
156
159
|
}
|
|
157
160
|
}
|
|
158
161
|
return undefined;
|
|
159
162
|
}
|
|
160
163
|
};
|
|
161
|
-
|
|
162
|
-
return bptReadNode(offset2 + rootNodeOffset);
|
|
164
|
+
return bptReadNode(offset2 + 32);
|
|
163
165
|
});
|
|
164
166
|
return filterUndef(await Promise.all(locs));
|
|
165
167
|
}
|
package/esm/bigbed.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"bigbed.js","sourceRoot":"","sources":["../src/bigbed.ts"],"names":[],"mappings":"AAAA,OAAO,qBAAqB,MAAM,+BAA+B,CAAA;AACjE,OAAO,QAAQ,MAAM,WAAW,CAAA;AAChC,OAAO,EAAE,UAAU,EAAE,cAAc,EAAE,KAAK,EAAE,MAAM,MAAM,CAAA;AACxD,OAAO,EAAE,GAAG,EAAE,MAAM,EAAE,MAAM,gBAAgB,CAAA;AAE5C,OAAO,EAAE,GAAG,EAAE,MAAM,OAAO,CAAA;AAkB3B,MAAM,UAAU,WAAW,CAAI,EAAqB;IAClD,OAAO,EAAE,CAAC,MAAM,CAAC,CAAC,CAAgB,EAAU,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;AACrD,CAAC;AAED,MAAM,OAAO,MAAO,SAAQ,GAAG;IAA/B;;QACS,qBAAgB,GAAG,IAAI,qBAAqB,CAA0B;YAC3E,KAAK,EAAE,IAAI,QAAQ,CAAC,EAAE,OAAO,EAAE,CAAC,EAAE,CAAC;YACnC,IAAI,EAAE,CAAC,IAAoB,EAAE,MAAoB,EAAE,EAAE,CACnD,IAAI,CAAC,YAAY,CAAC,EAAE,GAAG,IAAI,EAAE,MAAM,EAAE,CAAC;SACzC,CAAC,CAAA;
|
|
1
|
+
{"version":3,"file":"bigbed.js","sourceRoot":"","sources":["../src/bigbed.ts"],"names":[],"mappings":"AAAA,OAAO,qBAAqB,MAAM,+BAA+B,CAAA;AACjE,OAAO,QAAQ,MAAM,WAAW,CAAA;AAChC,OAAO,EAAE,UAAU,EAAE,cAAc,EAAE,KAAK,EAAE,MAAM,MAAM,CAAA;AACxD,OAAO,EAAE,GAAG,EAAE,MAAM,EAAE,MAAM,gBAAgB,CAAA;AAE5C,OAAO,EAAE,GAAG,EAAE,MAAM,OAAO,CAAA;AAkB3B,MAAM,UAAU,WAAW,CAAI,EAAqB;IAClD,OAAO,EAAE,CAAC,MAAM,CAAC,CAAC,CAAgB,EAAU,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;AACrD,CAAC;AAED,MAAM,OAAO,MAAO,SAAQ,GAAG;IAA/B;;QACS,qBAAgB,GAAG,IAAI,qBAAqB,CAA0B;YAC3E,KAAK,EAAE,IAAI,QAAQ,CAAC,EAAE,OAAO,EAAE,CAAC,EAAE,CAAC;YACnC,IAAI,EAAE,CAAC,IAAoB,EAAE,MAAoB,EAAE,EAAE,CACnD,IAAI,CAAC,YAAY,CAAC,EAAE,GAAG,IAAI,EAAE,MAAM,EAAE,CAAC;SACzC,CAAC,CAAA;IA4MJ,CAAC;IA1MQ,WAAW,CAAC,OAAuB,EAAE;QAC1C,MAAM,EAAE,MAAM,EAAE,GAAG,IAAI,EAAE,GAAG,IAAI,CAAA;QAChC,OAAO,IAAI,CAAC,gBAAgB,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,MAAM,CAAC,CAAA;IACtE,CAAC;IAED;;OAEG;IACO,KAAK,CAAC,OAAO,CAAC,MAAc,EAAE,IAAqB;QAC3D,OAAO,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,CAAA;IACnC,CAAC;IAED;;;;;;OAMG;IACK,KAAK,CAAC,YAAY,CAAC,IAAoB;QAC7C,MAAM,EAAE,eAAe,EAAE,GAAG,MAAM,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,CAAA;QACtD,MAAM,CAAC,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,EAAE,MAAM,CAAC,eAAe,CAAC,CAAC,CAAA;QAE1D,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;QAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;QACd,iDAAiD;QACjD,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,KAAK,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QAC9C,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;QAC9D,MAAM,IAAI,CAAC,CAAA;QAEX,wCAAwC;QACxC,IAAI,KAAK,KAAK,CAAC,EAAE,CAAC;YAChB,OAAO,EAAE,CAAA;QACX,CAAC;QAED,MAAM,QAAQ,GAAG,EAAE,CAAA;QACnB,MAAM,GAAG,GAAG,QAAQ,GAAG,KAAK,CAAA;QAC5B,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,MAAM,CAAC,UAAU,CAAC,CAAC,CAAA;QAE3D,MAAM,OAAO,GAAG,EAAa,CAAA;QAE7B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;YAClC,MAAM,CAAC,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC,GAAG,QAAQ,CAAC,CAAA;YACvC,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;YAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;YACd,MAAM,IAAI,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC5C,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,UAAU,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAClD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;YAC9D,MAAM,IAAI,CAAC,GAAG,CAAC,CAAA,CAAC,QAAQ;YACxB,MAAM,KAAK,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC7C,OAAO,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,EAAE,MAAM,CAAC,UAAU,CAAC,EAAE,KAAK,EAAE,CAAC,CAAA;QACvE,CAAC;QACD,OAAO,OAAO,CAAA;IAChB,CAAC;IAED;;;;;;;;;OASG;IACK,KAAK,CAAC,sBAAsB,CAClC,IAAY,EACZ,OAAuB,EAAE;QAEzB,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,WAAW,CAAC,IAAI,CAAC,CAAA;QAC5C,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,OAAO,EAAE,CAAA;QACX,CAAC;QACD,MAAM,OAAO,GAAG,IAAI,WAAW,CAAC,MAAM,CAAC,CAAA;QACvC,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,EAAC,KAAK,EAAC,EAAE;YACrC,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;YACxC,MAAM,CAAC,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,EAAE,OAAO,EAAE,IAAI,CAAC,CAAA;YAEhD,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;YAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;YACd,iDAAiD;YACjD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,SAAS,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YACjD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,OAAO,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC/C,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,OAAO,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC/C,MAAM,IAAI,CAAC,CAAA;YACX,iEAAiE;YACjE,MAAM,IAAI,CAAC,CAAA;YAEX,MAAM,WAAW,GAAG,KAAK,EAAE,UAAkB,EAAE,EAAE;gBAC/C,MAAM,GAAG,GAAG,MAAM,CAAC,UAAU,CAAC,CAAA;gBAC9B,MAAM,GAAG,GAAG,CAAC,GAAG,SAAS,GAAG,CAAC,OAAO,GAAG,OAAO,CAAC,CAAA;gBAC/C,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,GAAG,EAAE,IAAI,CAAC,CAAA;gBAClD,MAAM,CAAC,GAAG,MAAM,CAAA;gBAChB,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;gBAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;gBACd,MAAM,QAAQ,GAAG,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC,CAAA;gBACzC,MAAM,IAAI,CAAC,CAAA,CAAC,QAAQ;gBACpB,MAAM,GAAG,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;gBAC3C,MAAM,IAAI,CAAC,CAAA;gBACX,MAAM,IAAI,GAAG,EAAE,CAAA;gBACf,IAAI,QAAQ,KAAK,CAAC,EAAE,CAAC;oBACnB,MAAM,QAAQ,GAAG,EAAE,CAAA;oBACnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC;wBAC7B,MAAM,GAAG,GAAG,OAAO;6BAChB,MAAM,CAAC,CAAC,CAAC,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,CAAC;6BAC5C,UAAU,CAAC,IAAI,EAAE,EAAE,CAAC,CAAA;wBACvB,MAAM,IAAI,OAAO,CAAA;wBACjB,MAAM,UAAU,GAAG,MAAM,CAAC,QAAQ,CAAC,YAAY,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;wBAC9D,MAAM,IAAI,CAAC,CAAA;wBACX,QAAQ,CAAC,IAAI,CAAC;4BACZ,GAAG;4BACH,MAAM,EAAE,UAAU;yBACnB,CAAC,CAAA;oBACJ,CAAC;oBAED,IAAI,UAAU,GAAG,CAAC,CAAA;oBAClB,KAAK,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,IAAI,QAAQ,EAAE,CAAC;wBACvC,IAAI,IAAI,CAAC,aAAa,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,UAAU,EAAE,CAAC;4BAC9C,OAAO,WAAW,CAAC,UAAU,CAAC,CAAA;wBAChC,CAAC;wB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|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@gmod/bbi",
|
|
3
|
-
"version": "6.0.
|
|
3
|
+
"version": "6.0.3",
|
|
4
4
|
"description": "Parser for BigWig/BigBed files",
|
|
5
5
|
"license": "MIT",
|
|
6
6
|
"repository": "GMOD/bbi-js",
|
|
@@ -56,7 +56,7 @@
|
|
|
56
56
|
"@vitest/coverage-v8": "^3.0.1",
|
|
57
57
|
"eslint": "^9.9.1",
|
|
58
58
|
"eslint-plugin-import": "^2.31.0",
|
|
59
|
-
"eslint-plugin-unicorn": "^
|
|
59
|
+
"eslint-plugin-unicorn": "^58.0.0",
|
|
60
60
|
"prettier": "^3.2.5",
|
|
61
61
|
"rimraf": "^6.0.1",
|
|
62
62
|
"standard-changelog": "^6.0.0",
|
package/src/bbi.ts
CHANGED
|
@@ -227,6 +227,10 @@ export abstract class BBI {
|
|
|
227
227
|
}
|
|
228
228
|
const isLeafNode = dataView.getUint8(offset)
|
|
229
229
|
offset += 2 //skip 1
|
|
230
|
+
|
|
231
|
+
if (offset >= b.length) {
|
|
232
|
+
return
|
|
233
|
+
}
|
|
230
234
|
const cnt = dataView.getUint16(offset, true)
|
|
231
235
|
offset += 2
|
|
232
236
|
if (isLeafNode) {
|
|
@@ -248,7 +252,6 @@ export abstract class BBI {
|
|
|
248
252
|
}
|
|
249
253
|
}
|
|
250
254
|
} else {
|
|
251
|
-
// parse index node
|
|
252
255
|
const nextNodes = []
|
|
253
256
|
for (let n = 0; n < cnt; n++) {
|
|
254
257
|
offset += keySize
|
package/src/bigbed.ts
CHANGED
|
@@ -110,7 +110,7 @@ export class BigBed extends BBI {
|
|
|
110
110
|
return []
|
|
111
111
|
}
|
|
112
112
|
const decoder = new TextDecoder('utf8')
|
|
113
|
-
const locs = indices.map(async
|
|
113
|
+
const locs = indices.map(async index => {
|
|
114
114
|
const { offset: offset2, field } = index
|
|
115
115
|
const b = await this.bbi.read(32, offset2, opts)
|
|
116
116
|
|
|
@@ -184,15 +184,17 @@ export class BigBed extends BBI {
|
|
|
184
184
|
|
|
185
185
|
for (const n of keys) {
|
|
186
186
|
if (n.key === name) {
|
|
187
|
-
return {
|
|
187
|
+
return {
|
|
188
|
+
...n,
|
|
189
|
+
field,
|
|
190
|
+
}
|
|
188
191
|
}
|
|
189
192
|
}
|
|
190
193
|
|
|
191
194
|
return undefined
|
|
192
195
|
}
|
|
193
196
|
}
|
|
194
|
-
|
|
195
|
-
return bptReadNode(offset2 + rootNodeOffset)
|
|
197
|
+
return bptReadNode(offset2 + 32)
|
|
196
198
|
})
|
|
197
199
|
return filterUndef(await Promise.all(locs))
|
|
198
200
|
}
|