@gmod/bbi 4.0.5 → 4.0.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (24) hide show
  1. package/CHANGELOG.md +4 -0
  2. package/dist/bigbed.d.ts +1 -1
  3. package/dist/bigbed.js +3 -3
  4. package/dist/bigbed.js.map +1 -1
  5. package/dist/bigint-polyfill/pure.js +4 -5
  6. package/dist/bigint-polyfill/pure.js.map +1 -1
  7. package/dist/block-view.js +1 -1
  8. package/dist/block-view.js.map +1 -1
  9. package/dist/unzip-pako.d.ts +0 -1
  10. package/dist/unzip-pako.js +1 -2
  11. package/dist/unzip-pako.js.map +1 -1
  12. package/dist/unzip.d.ts +0 -1
  13. package/dist/util.js +4 -4
  14. package/dist/util.js.map +1 -1
  15. package/esm/bigbed.d.ts +1 -1
  16. package/esm/bigbed.js +1 -1
  17. package/esm/bigbed.js.map +1 -1
  18. package/esm/block-view.js +1 -1
  19. package/esm/block-view.js.map +1 -1
  20. package/esm/unzip-pako.d.ts +0 -1
  21. package/esm/unzip.d.ts +0 -1
  22. package/package.json +3 -3
  23. package/src/bigbed.ts +1 -1
  24. package/src/block-view.ts +1 -1
package/CHANGELOG.md CHANGED
@@ -1,3 +1,7 @@
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+ ## [4.0.6](https://github.com/GMOD/bbi-js/compare/v4.0.5...v4.0.6) (2024-07-23)
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  ## [4.0.5](https://github.com/GMOD/bbi-js/compare/v4.0.4...v4.0.5) (2024-06-19)
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package/dist/bigbed.d.ts CHANGED
@@ -1,4 +1,4 @@
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- import AbortablePromiseCache from 'abortable-promise-cache';
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+ import AbortablePromiseCache from '@gmod/abortable-promise-cache';
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  import { BBI, Feature, RequestOptions } from './bbi';
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  interface Index {
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  type: number;
package/dist/bigbed.js CHANGED
@@ -23,18 +23,18 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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- exports.BigBed = exports.filterUndef = void 0;
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+ exports.BigBed = void 0;
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+ exports.filterUndef = filterUndef;
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  const buffer_1 = require("buffer");
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  const binary_parser_1 = require("binary-parser");
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  const rxjs_1 = require("rxjs");
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  const operators_1 = require("rxjs/operators");
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- const abortable_promise_cache_1 = __importDefault(require("abortable-promise-cache"));
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+ const abortable_promise_cache_1 = __importDefault(require("@gmod/abortable-promise-cache"));
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  const quick_lru_1 = __importDefault(require("quick-lru"));
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  const bbi_1 = require("./bbi");
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  function filterUndef(ts) {
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  return ts.filter((t) => !!t);
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  }
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- exports.filterUndef = filterUndef;
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  class BigBed extends bbi_1.BBI {
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  constructor() {
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  super(...arguments);
package/dist/bigbed.js.map CHANGED
@@ -1 +1 @@
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- 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1
+ 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package/dist/bigint-polyfill/pure.js CHANGED
@@ -1,6 +1,9 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.setBigUint64 = exports.setBigInt64 = exports.getBigUint64 = exports.getBigInt64 = void 0;
3
+ exports.getBigInt64 = getBigInt64;
4
+ exports.getBigUint64 = getBigUint64;
5
+ exports.setBigInt64 = setBigInt64;
6
+ exports.setBigUint64 = setBigUint64;
4
7
  const BigInt32 = BigInt(32);
5
8
  function getBigInt64(dataView, byteOffset, littleEndian) {
6
9
  const littleEndianMask = Number(!!littleEndian);
@@ -11,7 +14,6 @@ function getBigInt64(dataView, byteOffset, littleEndian) {
11
14
  BigInt(dataView.getUint32(byteOffset, littleEndian) * littleEndianMask +
12
15
  dataView.getUint32(byteOffset + 4, littleEndian) * bigEndianMask));
13
16
  }
14
- exports.getBigInt64 = getBigInt64;
15
17
  function getBigUint64(dataView, byteOffset, littleEndian) {
16
18
  const a = dataView.getUint32(byteOffset, littleEndian);
17
19
  const b = dataView.getUint32(byteOffset + 4, littleEndian);
@@ -23,7 +25,6 @@ function getBigUint64(dataView, byteOffset, littleEndian) {
23
25
  return ((BigInt(a * bigEndianMask + b * littleEndianMask) << BigInt32) |
24
26
  BigInt(a * littleEndianMask + b * bigEndianMask));
25
27
  }
26
- exports.getBigUint64 = getBigUint64;
27
28
  function setBigInt64(dataView, byteOffset, value, littleEndian) {
28
29
  const hi = Number(value >> BigInt32);
29
30
  const lo = Number(value & BigInt(0xffffffff));
@@ -36,7 +37,6 @@ function setBigInt64(dataView, byteOffset, value, littleEndian) {
36
37
  dataView.setUint32(byteOffset + 4, lo, littleEndian);
37
38
  }
38
39
  }
39
- exports.setBigInt64 = setBigInt64;
40
40
  function setBigUint64(dataView, byteOffset, value, littleEndian) {
41
41
  const hi = Number(value >> BigInt32);
42
42
  const lo = Number(value & BigInt(0xffffffff));
@@ -49,5 +49,4 @@ function setBigUint64(dataView, byteOffset, value, littleEndian) {
49
49
  dataView.setUint32(byteOffset + 4, lo, littleEndian);
50
50
  }
51
51
  }
52
- exports.setBigUint64 = setBigUint64;
53
52
  //# sourceMappingURL=pure.js.map
package/dist/bigint-polyfill/pure.js.map CHANGED
@@ -1 +1 @@
1
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package/dist/block-view.js CHANGED
@@ -15,7 +15,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
15
15
  exports.BlockView = void 0;
16
16
  const buffer_1 = require("buffer");
17
17
  const binary_parser_1 = require("binary-parser");
18
- const abortable_promise_cache_1 = __importDefault(require("abortable-promise-cache"));
18
+ const abortable_promise_cache_1 = __importDefault(require("@gmod/abortable-promise-cache"));
19
19
  const quick_lru_1 = __importDefault(require("quick-lru"));
20
20
  // locals
21
21
  const range_1 = __importDefault(require("./range"));
package/dist/block-view.js.map CHANGED
@@ -1 +1 @@
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package/dist/unzip-pako.d.ts CHANGED
@@ -1,3 +1,2 @@
1
- /// <reference types="node" />
2
1
  import { Buffer } from 'buffer';
3
2
  export declare function unzip(input: Buffer): Uint8Array;
package/dist/unzip-pako.js CHANGED
@@ -1,9 +1,8 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.unzip = void 0;
3
+ exports.unzip = unzip;
4
4
  const pako_1 = require("pako");
5
5
  function unzip(input) {
6
6
  return (0, pako_1.inflateRaw)(input.subarray(2));
7
7
  }
8
- exports.unzip = unzip;
9
8
  //# sourceMappingURL=unzip-pako.js.map
package/dist/unzip-pako.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"unzip-pako.js","sourceRoot":"","sources":["../src/unzip-pako.ts"],"names":[],"mappings":";;;AACA,+BAAiC;AAEjC,SAAgB,KAAK,CAAC,KAAa;IACjC,OAAO,IAAA,iBAAU,EAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAA;AACtC,CAAC;AAFD,sBAEC"}
1
+ {"version":3,"file":"unzip-pako.js","sourceRoot":"","sources":["../src/unzip-pako.ts"],"names":[],"mappings":";;AAGA,sBAEC;AAJD,+BAAiC;AAEjC,SAAgB,KAAK,CAAC,KAAa;IACjC,OAAO,IAAA,iBAAU,EAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAA;AACtC,CAAC"}
package/dist/unzip.d.ts CHANGED
@@ -1,2 +1 @@
1
- /// <reference types="node" />
2
1
  export { inflateSync as unzip } from 'zlib';
package/dist/util.js CHANGED
@@ -9,7 +9,10 @@ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, ge
9
9
  });
10
10
  };
11
11
  Object.defineProperty(exports, "__esModule", { value: true });
12
- exports.abortBreakPoint = exports.checkAbortSignal = exports.groupBlocks = exports.AbortError = void 0;
12
+ exports.AbortError = void 0;
13
+ exports.groupBlocks = groupBlocks;
14
+ exports.checkAbortSignal = checkAbortSignal;
15
+ exports.abortBreakPoint = abortBreakPoint;
13
16
  class AbortError extends Error {
14
17
  constructor(message) {
15
18
  super(message);
@@ -45,7 +48,6 @@ function groupBlocks(blocks) {
45
48
  }
46
49
  return blockGroups;
47
50
  }
48
- exports.groupBlocks = groupBlocks;
49
51
  /**
50
52
  * Properly check if the given AbortSignal is aborted.
51
53
  * Per the standard, if the signal reads as aborted,
@@ -73,7 +75,6 @@ function checkAbortSignal(signal) {
73
75
  }
74
76
  }
75
77
  }
76
- exports.checkAbortSignal = checkAbortSignal;
77
78
  /**
78
79
  * Skips to the next tick, then runs `checkAbortSignal`.
79
80
  * Await this to inside an otherwise synchronous loop to
@@ -86,5 +87,4 @@ function abortBreakPoint(signal) {
86
87
  checkAbortSignal(signal);
87
88
  });
88
89
  }
89
- exports.abortBreakPoint = abortBreakPoint;
90
90
  //# sourceMappingURL=util.js.map
package/dist/util.js.map CHANGED
@@ -1 +1 @@
1
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package/esm/bigbed.d.ts CHANGED
@@ -1,4 +1,4 @@
1
- import AbortablePromiseCache from 'abortable-promise-cache';
1
+ import AbortablePromiseCache from '@gmod/abortable-promise-cache';
2
2
  import { BBI, Feature, RequestOptions } from './bbi';
3
3
  interface Index {
4
4
  type: number;
package/esm/bigbed.js CHANGED
@@ -2,7 +2,7 @@ import { Buffer } from 'buffer';
2
2
  import { Parser } from 'binary-parser';
3
3
  import { Observable, merge, firstValueFrom } from 'rxjs';
4
4
  import { map, reduce } from 'rxjs/operators';
5
- import AbortablePromiseCache from 'abortable-promise-cache';
5
+ import AbortablePromiseCache from '@gmod/abortable-promise-cache';
6
6
  import QuickLRU from 'quick-lru';
7
7
  import { BBI } from './bbi';
8
8
  export function filterUndef(ts) {
package/esm/bigbed.js.map CHANGED
@@ -1 +1 @@
1
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1
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package/esm/block-view.js CHANGED
@@ -1,6 +1,6 @@
1
1
  import { Buffer } from 'buffer';
2
2
  import { Parser } from 'binary-parser';
3
- import AbortablePromiseCache from 'abortable-promise-cache';
3
+ import AbortablePromiseCache from '@gmod/abortable-promise-cache';
4
4
  import QuickLRU from 'quick-lru';
5
5
  // locals
6
6
  import Range from './range';
package/esm/block-view.js.map CHANGED
@@ -1 +1 @@
1
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package/esm/unzip-pako.d.ts CHANGED
@@ -1,3 +1,2 @@
1
- /// <reference types="node" />
2
1
  import { Buffer } from 'buffer';
3
2
  export declare function unzip(input: Buffer): Uint8Array;
package/esm/unzip.d.ts CHANGED
@@ -1,2 +1 @@
1
- /// <reference types="node" />
2
1
  export { inflateSync as unzip } from 'zlib';
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@gmod/bbi",
3
- "version": "4.0.5",
3
+ "version": "4.0.6",
4
4
  "description": "Parser for BigWig/BigBed files",
5
5
  "license": "MIT",
6
6
  "repository": "GMOD/bbi-js",
@@ -42,7 +42,7 @@
42
42
  "genomics"
43
43
  ],
44
44
  "dependencies": {
45
- "abortable-promise-cache": "^1.4.1",
45
+ "@gmod/abortable-promise-cache": "^2.0.0",
46
46
  "binary-parser": "^2.1.0",
47
47
  "generic-filehandle": "^3.0.0",
48
48
  "pako": "^2.0.0",
@@ -63,7 +63,7 @@
63
63
  "jest": "^29.6.2",
64
64
  "jest-environment-jsdom": "^29.6.2",
65
65
  "prettier": "^3.2.5",
66
- "rimraf": "^5.0.1",
66
+ "rimraf": "^6.0.1",
67
67
  "standard-changelog": "^6.0.0",
68
68
  "ts-jest": "^29.1.2",
69
69
  "typescript": "^5.1.6"
package/src/bigbed.ts CHANGED
@@ -2,7 +2,7 @@ import { Buffer } from 'buffer'
2
2
  import { Parser } from 'binary-parser'
3
3
  import { Observable, merge, firstValueFrom } from 'rxjs'
4
4
  import { map, reduce } from 'rxjs/operators'
5
- import AbortablePromiseCache from 'abortable-promise-cache'
5
+ import AbortablePromiseCache from '@gmod/abortable-promise-cache'
6
6
  import QuickLRU from 'quick-lru'
7
7
 
8
8
  import { BBI, Feature, RequestOptions } from './bbi'
package/src/block-view.ts CHANGED
@@ -1,7 +1,7 @@
1
1
  import { Buffer } from 'buffer'
2
2
  import { Observer } from 'rxjs'
3
3
  import { Parser } from 'binary-parser'
4
- import AbortablePromiseCache from 'abortable-promise-cache'
4
+ import AbortablePromiseCache from '@gmod/abortable-promise-cache'
5
5
  import { GenericFilehandle } from 'generic-filehandle'
6
6
  import QuickLRU from 'quick-lru'
7
7