@gmod/bbi 2.0.4 → 2.0.5

package/dist/bigwig.js

@@ -1,19 +1,4 @@
 "use strict";
-var __extends = (this && this.__extends) || (function () {
-    var extendStatics = function (d, b) {
-        extendStatics = Object.setPrototypeOf ||
-            ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
-            function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
-        return extendStatics(d, b);
-    };
-    return function (d, b) {
-        if (typeof b !== "function" && b !== null)
-            throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
-        extendStatics(d, b);
-        function __() { this.constructor = d; }
-        d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
-    };
-})();
 var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
     function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
     return new (P || (P = Promise))(function (resolve, reject) {
@@ -23,75 +8,36 @@ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, ge
         step((generator = generator.apply(thisArg, _arguments || [])).next());
     });
 };
-var __generator = (this && this.__generator) || function (thisArg, body) {
-    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
-    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
-    function verb(n) { return function (v) { return step([n, v]); }; }
-    function step(op) {
-        if (f) throw new TypeError("Generator is already executing.");
-        while (_) try {
-            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
-            if (y = 0, t) op = [op[0] & 2, t.value];
-            switch (op[0]) {
-                case 0: case 1: t = op; break;
-                case 4: _.label++; return { value: op[1], done: false };
-                case 5: _.label++; y = op[1]; op = [0]; continue;
-                case 7: op = _.ops.pop(); _.trys.pop(); continue;
-                default:
-                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
-                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
-                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
-                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
-                    if (t[2]) _.ops.pop();
-                    _.trys.pop(); continue;
-            }
-            op = body.call(thisArg, _);
-        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
-        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
-    }
-};
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.BigWig = void 0;
-var blockView_1 = require("./blockView");
-var bbi_1 = require("./bbi");
-var BigWig = /** @class */ (function (_super) {
-    __extends(BigWig, _super);
-    function BigWig() {
-        return _super !== null && _super.apply(this, arguments) || this;
-    }
+const blockView_1 = require("./blockView");
+const bbi_1 = require("./bbi");
+class BigWig extends bbi_1.BBI {
     /**
      * Retrieves a BlockView of a specific zoomLevel
      *
      * @param scale - number
      * @param opts - An object containing basesPerSpan (e.g. pixels per basepair) or scale used to infer the zoomLevel to use
      */
-    BigWig.prototype.getView = function (scale, opts) {
-        return __awaiter(this, void 0, void 0, function () {
-            var _a, zoomLevels, refsByName, fileSize, isBigEndian, uncompressBufSize, basesPerPx, maxLevel, i, zh, indexOffset;
-            return __generator(this, function (_b) {
-                switch (_b.label) {
-                    case 0: return [4 /*yield*/, this.getHeader(opts)];
-                    case 1:
-                        _a = _b.sent(), zoomLevels = _a.zoomLevels, refsByName = _a.refsByName, fileSize = _a.fileSize, isBigEndian = _a.isBigEndian, uncompressBufSize = _a.uncompressBufSize;
-                        basesPerPx = 1 / scale;
-                        maxLevel = zoomLevels.length;
-                        if (!fileSize) {
-                            // if we don't know the file size, we can't fetch the highest zoom level :-(
-                            maxLevel -= 1;
-                        }
-                        for (i = maxLevel; i >= 0; i -= 1) {
-                            zh = zoomLevels[i];
-                            if (zh && zh.reductionLevel <= 2 * basesPerPx) {
-                                indexOffset = Number(zh.indexOffset);
-                                return [2 /*return*/, new blockView_1.BlockView(this.bbi, refsByName, indexOffset, isBigEndian, uncompressBufSize > 0, 'summary')];
-                            }
-                        }
-                        return [2 /*return*/, this.getUnzoomedView(opts)];
+    getView(scale, opts) {
+        return __awaiter(this, void 0, void 0, function* () {
+            const { zoomLevels, refsByName, fileSize, isBigEndian, uncompressBufSize } = yield this.getHeader(opts);
+            const basesPerPx = 1 / scale;
+            let maxLevel = zoomLevels.length;
+            if (!fileSize) {
+                // if we don't know the file size, we can't fetch the highest zoom level :-(
+                maxLevel -= 1;
+            }
+            for (let i = maxLevel; i >= 0; i -= 1) {
+                const zh = zoomLevels[i];
+                if (zh && zh.reductionLevel <= 2 * basesPerPx) {
+                    const indexOffset = Number(zh.indexOffset);
+                    return new blockView_1.BlockView(this.bbi, refsByName, indexOffset, isBigEndian, uncompressBufSize > 0, 'summary');
                 }
-            });
+            }
+            return this.getUnzoomedView(opts);
         });
-    };
-    return BigWig;
-}(bbi_1.BBI));
+    }
+}
 exports.BigWig = BigWig;
 //# sourceMappingURL=bigwig.js.map

package/dist/bigwig.js.map

@@ -1 +1 @@
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+{"version":3,"file":"bigwig.js","sourceRoot":"","sources":["../src/bigwig.ts"],"names":[],"mappings":";;;;;;;;;;;;AAAA,2CAAuC;AACvC,+BAA2C;AAE3C,MAAa,MAAO,SAAQ,SAAG;IAC7B;;;;;OAKG;IACa,OAAO,CAAC,KAAa,EAAE,IAAoB;;YACzD,MAAM,EAAE,UAAU,EAAE,UAAU,EAAE,QAAQ,EAAE,WAAW,EAAE,iBAAiB,EAAE,GACxE,MAAM,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,CAAA;YAC5B,MAAM,UAAU,GAAG,CAAC,GAAG,KAAK,CAAA;YAC5B,IAAI,QAAQ,GAAG,UAAU,CAAC,MAAM,CAAA;YAChC,IAAI,CAAC,QAAQ,EAAE;gBACb,4EAA4E;gBAC5E,QAAQ,IAAI,CAAC,CAAA;aACd;YAED,KAAK,IAAI,CAAC,GAAG,QAAQ,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,EAAE;gBACrC,MAAM,EAAE,GAAG,UAAU,CAAC,CAAC,CAAC,CAAA;gBACxB,IAAI,EAAE,IAAI,EAAE,CAAC,cAAc,IAAI,CAAC,GAAG,UAAU,EAAE;oBAC7C,MAAM,WAAW,GAAG,MAAM,CAAC,EAAE,CAAC,WAAW,CAAC,CAAA;oBAE1C,OAAO,IAAI,qBAAS,CAClB,IAAI,CAAC,GAAG,EACR,UAAU,EACV,WAAW,EACX,WAAW,EACX,iBAAiB,GAAG,CAAC,EACrB,SAAS,CACV,CAAA;iBACF;aACF;YACD,OAAO,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,CAAA;QACnC,CAAC;KAAA;CACF;AAlCD,wBAkCC"}