@gmod/bbi 2.0.1 → 2.0.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (28) hide show
  1. package/CHANGELOG.md +9 -1
  2. package/dist/bbi.js +3 -2
  3. package/dist/bbi.js.map +1 -1
  4. package/dist/bigint-polyfill/polyfill.d.ts +1 -0
  5. package/dist/bigint-polyfill/polyfill.js +24 -0
  6. package/dist/bigint-polyfill/polyfill.js.map +1 -0
  7. package/dist/bigint-polyfill/pure.d.ts +4 -0
  8. package/dist/bigint-polyfill/pure.js +53 -0
  9. package/dist/bigint-polyfill/pure.js.map +1 -0
  10. package/dist/index.d.ts +1 -0
  11. package/dist/index.js +4 -0
  12. package/dist/index.js.map +1 -1
  13. package/esm/bbi.js +2 -1
  14. package/esm/bbi.js.map +1 -1
  15. package/esm/bigint-polyfill/polyfill.d.ts +1 -0
  16. package/esm/bigint-polyfill/polyfill.js +22 -0
  17. package/esm/bigint-polyfill/polyfill.js.map +1 -0
  18. package/esm/bigint-polyfill/pure.d.ts +4 -0
  19. package/esm/bigint-polyfill/pure.js +46 -0
  20. package/esm/bigint-polyfill/pure.js.map +1 -0
  21. package/esm/index.d.ts +1 -0
  22. package/esm/index.js +4 -0
  23. package/esm/index.js.map +1 -1
  24. package/package.json +1 -1
  25. package/src/bbi.ts +2 -1
  26. package/src/bigint-polyfill/polyfill.ts +25 -0
  27. package/src/bigint-polyfill/pure.ts +78 -0
  28. package/src/index.ts +4 -0
package/CHANGELOG.md CHANGED
@@ -1,6 +1,14 @@
1
- ## [2.0.1](https://github.com/GMOD/bbi-js/compare/v2.0.0...v2.0.1) (2022-07-18)
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+ ## [2.0.3](https://github.com/GMOD/bbi-js/compare/v2.0.2...v2.0.3) (2022-10-10)
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+
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+
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+ - Add BigInt64 polyfill for older safari
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+ ## [2.0.2](https://github.com/GMOD/bbi-js/compare/v2.0.1...v2.0.2) (2022-07-18)
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+
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+ - Make basesCovered a number instead of BigInt
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+
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+ ## [2.0.1](https://github.com/GMOD/bbi-js/compare/v2.0.0...v2.0.1) (2022-07-18)
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  - Bump generic-filehandle 2->3
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package/dist/bbi.js CHANGED
@@ -171,7 +171,7 @@ var BBI = /** @class */ (function () {
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  BBI.prototype._getMainHeader = function (opts, requestSize) {
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  if (requestSize === void 0) { requestSize = 2000; }
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  return __awaiter(this, void 0, void 0, function () {
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- var buffer, isBigEndian, ret, header, magic, asOffset, totalSummaryOffset, off, tail;
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+ var buffer, isBigEndian, ret, header, magic, asOffset, totalSummaryOffset, off, tail, sum;
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  return __generator(this, function (_a) {
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  switch (_a.label) {
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  case 0: return [4 /*yield*/, this.bbi.read(Buffer.alloc(requestSize), 0, requestSize, 0, opts)];
@@ -196,7 +196,8 @@ var BBI = /** @class */ (function () {
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  }
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  if (header.totalSummaryOffset) {
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  tail = buffer.subarray(Number(header.totalSummaryOffset));
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- header.totalSummary = ret.totalSummaryParser.parse(tail);
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+ sum = ret.totalSummaryParser.parse(tail);
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+ header.totalSummary = __assign(__assign({}, sum), { basesCovered: Number(sum.basesCovered) });
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  }
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  return [2 /*return*/, __assign(__assign({}, header), { isBigEndian: isBigEndian })];
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  }
package/dist/bbi.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/bigint-polyfill/polyfill.d.ts ADDED
@@ -0,0 +1 @@
1
+ export {};
package/dist/bigint-polyfill/polyfill.js ADDED
@@ -0,0 +1,24 @@
1
+ "use strict";
2
+ Object.defineProperty(exports, "__esModule", { value: true });
3
+ var pure_1 = require("./pure");
4
+ if (!('getBigInt64' in DataView)) {
5
+ DataView.prototype.getBigInt64 = function (byteOffset, littleEndian) {
6
+ return (0, pure_1.getBigInt64)(this, byteOffset, littleEndian);
7
+ };
8
+ }
9
+ if (!('getBigUint64' in DataView)) {
10
+ DataView.prototype.getBigUint64 = function (byteOffset, littleEndian) {
11
+ return (0, pure_1.getBigUint64)(this, byteOffset, littleEndian);
12
+ };
13
+ }
14
+ if (!('setBigInt64' in DataView)) {
15
+ DataView.prototype.setBigInt64 = function (byteOffset, value, littleEndian) {
16
+ (0, pure_1.setBigInt64)(this, byteOffset, value, littleEndian);
17
+ };
18
+ }
19
+ if (!('setBigUint64' in DataView)) {
20
+ DataView.prototype.setBigUint64 = function (byteOffset, value, littleEndian) {
21
+ (0, pure_1.setBigUint64)(this, byteOffset, value, littleEndian);
22
+ };
23
+ }
24
+ //# sourceMappingURL=polyfill.js.map
package/dist/bigint-polyfill/polyfill.js.map ADDED
@@ -0,0 +1 @@
1
+ {"version":3,"file":"polyfill.js","sourceRoot":"","sources":["../../src/bigint-polyfill/polyfill.ts"],"names":[],"mappings":";;AAAA,+BAA6E;AAE7E,IAAI,CAAC,CAAC,aAAa,IAAI,QAAQ,CAAC,EAAE;IAChC,QAAQ,CAAC,SAAS,CAAC,WAAW,GAAG,UAAU,UAAU,EAAE,YAAY;QACjE,OAAO,IAAA,kBAAW,EAAC,IAAI,EAAE,UAAU,EAAE,YAAY,CAAC,CAAA;IACpD,CAAC,CAAA;CACF;AAED,IAAI,CAAC,CAAC,cAAc,IAAI,QAAQ,CAAC,EAAE;IACjC,QAAQ,CAAC,SAAS,CAAC,YAAY,GAAG,UAAU,UAAU,EAAE,YAAY;QAClE,OAAO,IAAA,mBAAY,EAAC,IAAI,EAAE,UAAU,EAAE,YAAY,CAAC,CAAA;IACrD,CAAC,CAAA;CACF;AAED,IAAI,CAAC,CAAC,aAAa,IAAI,QAAQ,CAAC,EAAE;IAChC,QAAQ,CAAC,SAAS,CAAC,WAAW,GAAG,UAAU,UAAU,EAAE,KAAK,EAAE,YAAY;QACxE,IAAA,kBAAW,EAAC,IAAI,EAAE,UAAU,EAAE,KAAK,EAAE,YAAY,CAAC,CAAA;IACpD,CAAC,CAAA;CACF;AAED,IAAI,CAAC,CAAC,cAAc,IAAI,QAAQ,CAAC,EAAE;IACjC,QAAQ,CAAC,SAAS,CAAC,YAAY,GAAG,UAAU,UAAU,EAAE,KAAK,EAAE,YAAY;QACzE,IAAA,mBAAY,EAAC,IAAI,EAAE,UAAU,EAAE,KAAK,EAAE,YAAY,CAAC,CAAA;IACrD,CAAC,CAAA;CACF"}
package/dist/bigint-polyfill/pure.d.ts ADDED
@@ -0,0 +1,4 @@
1
+ export declare function getBigInt64(dataView: DataView, byteOffset: number, littleEndian: boolean | undefined): bigint;
2
+ export declare function getBigUint64(dataView: DataView, byteOffset: number, littleEndian: boolean | undefined): bigint;
3
+ export declare function setBigInt64(dataView: DataView, byteOffset: number, value: bigint, littleEndian: boolean | undefined): void;
4
+ export declare function setBigUint64(dataView: DataView, byteOffset: number, value: bigint, littleEndian: boolean | undefined): void;
package/dist/bigint-polyfill/pure.js ADDED
@@ -0,0 +1,53 @@
1
+ "use strict";
2
+ Object.defineProperty(exports, "__esModule", { value: true });
3
+ exports.setBigUint64 = exports.setBigInt64 = exports.getBigUint64 = exports.getBigInt64 = void 0;
4
+ var BigInt32 = BigInt(32);
5
+ function getBigInt64(dataView, byteOffset, littleEndian) {
6
+ var littleEndianMask = Number(!!littleEndian);
7
+ var bigEndianMask = Number(!littleEndian);
8
+ return ((BigInt(dataView.getInt32(byteOffset, littleEndian) * bigEndianMask +
9
+ dataView.getInt32(byteOffset + 4, littleEndian) * littleEndianMask) <<
10
+ BigInt32) |
11
+ BigInt(dataView.getUint32(byteOffset, littleEndian) * littleEndianMask +
12
+ dataView.getUint32(byteOffset + 4, littleEndian) * bigEndianMask));
13
+ }
14
+ exports.getBigInt64 = getBigInt64;
15
+ function getBigUint64(dataView, byteOffset, littleEndian) {
16
+ var a = dataView.getUint32(byteOffset, littleEndian);
17
+ var b = dataView.getUint32(byteOffset + 4, littleEndian);
18
+ var littleEndianMask = Number(!!littleEndian);
19
+ var bigEndianMask = Number(!littleEndian);
20
+ // This branch-less optimization is 77x faster than normal ternary operator.
21
+ // and only 3% slower than native implementation
22
+ // https://jsbench.me/p8kyhg1eqv/1
23
+ return ((BigInt(a * bigEndianMask + b * littleEndianMask) << BigInt32) |
24
+ BigInt(a * littleEndianMask + b * bigEndianMask));
25
+ }
26
+ exports.getBigUint64 = getBigUint64;
27
+ function setBigInt64(dataView, byteOffset, value, littleEndian) {
28
+ var hi = Number(value >> BigInt32);
29
+ var lo = Number(value & BigInt(0xffffffff));
30
+ if (littleEndian) {
31
+ dataView.setInt32(byteOffset + 4, hi, littleEndian);
32
+ dataView.setUint32(byteOffset, lo, littleEndian);
33
+ }
34
+ else {
35
+ dataView.setInt32(byteOffset, hi, littleEndian);
36
+ dataView.setUint32(byteOffset + 4, lo, littleEndian);
37
+ }
38
+ }
39
+ exports.setBigInt64 = setBigInt64;
40
+ function setBigUint64(dataView, byteOffset, value, littleEndian) {
41
+ var hi = Number(value >> BigInt32);
42
+ var lo = Number(value & BigInt(0xffffffff));
43
+ if (littleEndian) {
44
+ dataView.setUint32(byteOffset + 4, hi, littleEndian);
45
+ dataView.setUint32(byteOffset, lo, littleEndian);
46
+ }
47
+ else {
48
+ dataView.setUint32(byteOffset, hi, littleEndian);
49
+ dataView.setUint32(byteOffset + 4, lo, littleEndian);
50
+ }
51
+ }
52
+ exports.setBigUint64 = setBigUint64;
53
+ //# sourceMappingURL=pure.js.map
package/dist/bigint-polyfill/pure.js.map ADDED
@@ -0,0 +1 @@
1
+ {"version":3,"file":"pure.js","sourceRoot":"","sources":["../../src/bigint-polyfill/pure.ts"],"names":[],"mappings":";;;AAAA,IAAM,QAAQ,GAAG,MAAM,CAAC,EAAE,CAAC,CAAA;AAE3B,SAAgB,WAAW,CACzB,QAAkB,EAClB,UAAkB,EAClB,YAAiC;IAEjC,IAAM,gBAAgB,GAAG,MAAM,CAAC,CAAC,CAAC,YAAY,CAAC,CAAA;IAC/C,IAAM,aAAa,GAAG,MAAM,CAAC,CAAC,YAAY,CAAC,CAAA;IAE3C,OAAO,CACL,CAAC,MAAM,CACL,QAAQ,CAAC,QAAQ,CAAC,UAAU,EAAE,YAAY,CAAC,GAAG,aAAa;QACzD,QAAQ,CAAC,QAAQ,CAAC,UAAU,GAAG,CAAC,EAAE,YAAY,CAAC,GAAG,gBAAgB,CACrE;QACC,QAAQ,CAAC;QACX,MAAM,CACJ,QAAQ,CAAC,SAAS,CAAC,UAAU,EAAE,YAAY,CAAC,GAAG,gBAAgB;YAC7D,QAAQ,CAAC,SAAS,CAAC,UAAU,GAAG,CAAC,EAAE,YAAY,CAAC,GAAG,aAAa,CACnE,CACF,CAAA;AACH,CAAC;AAnBD,kCAmBC;AAED,SAAgB,YAAY,CAC1B,QAAkB,EAClB,UAAkB,EAClB,YAAiC;IAEjC,IAAM,CAAC,GAAG,QAAQ,CAAC,SAAS,CAAC,UAAU,EAAE,YAAY,CAAC,CAAA;IACtD,IAAM,CAAC,GAAG,QAAQ,CAAC,SAAS,CAAC,UAAU,GAAG,CAAC,EAAE,YAAY,CAAC,CAAA;IAE1D,IAAM,gBAAgB,GAAG,MAAM,CAAC,CAAC,CAAC,YAAY,CAAC,CAAA;IAC/C,IAAM,aAAa,GAAG,MAAM,CAAC,CAAC,YAAY,CAAC,CAAA;IAE3C,4EAA4E;IAC5E,gDAAgD;IAChD,kCAAkC;IAClC,OAAO,CACL,CAAC,MAAM,CAAC,CAAC,GAAG,aAAa,GAAG,CAAC,GAAG,gBAAgB,CAAC,IAAI,QAAQ,CAAC;QAC9D,MAAM,CAAC,CAAC,GAAG,gBAAgB,GAAG,CAAC,GAAG,aAAa,CAAC,CACjD,CAAA;AACH,CAAC;AAlBD,oCAkBC;AAED,SAAgB,WAAW,CACzB,QAAkB,EAClB,UAAkB,EAClB,KAAa,EACb,YAAiC;IAEjC,IAAM,EAAE,GAAG,MAAM,CAAC,KAAK,IAAI,QAAQ,CAAC,CAAA;IACpC,IAAM,EAAE,GAAG,MAAM,CAAC,KAAK,GAAG,MAAM,CAAC,UAAU,CAAC,CAAC,CAAA;IAE7C,IAAI,YAAY,EAAE;QAChB,QAAQ,CAAC,QAAQ,CAAC,UAAU,GAAG,CAAC,EAAE,EAAE,EAAE,YAAY,CAAC,CAAA;QACnD,QAAQ,CAAC,SAAS,CAAC,UAAU,EAAE,EAAE,EAAE,YAAY,CAAC,CAAA;KACjD;SAAM;QACL,QAAQ,CAAC,QAAQ,CAAC,UAAU,EAAE,EAAE,EAAE,YAAY,CAAC,CAAA;QAC/C,QAAQ,CAAC,SAAS,CAAC,UAAU,GAAG,CAAC,EAAE,EAAE,EAAE,YAAY,CAAC,CAAA;KACrD;AACH,CAAC;AAhBD,kCAgBC;AAED,SAAgB,YAAY,CAC1B,QAAkB,EAClB,UAAkB,EAClB,KAAa,EACb,YAAiC;IAEjC,IAAM,EAAE,GAAG,MAAM,CAAC,KAAK,IAAI,QAAQ,CAAC,CAAA;IACpC,IAAM,EAAE,GAAG,MAAM,CAAC,KAAK,GAAG,MAAM,CAAC,UAAU,CAAC,CAAC,CAAA;IAE7C,IAAI,YAAY,EAAE;QAChB,QAAQ,CAAC,SAAS,CAAC,UAAU,GAAG,CAAC,EAAE,EAAE,EAAE,YAAY,CAAC,CAAA;QACpD,QAAQ,CAAC,SAAS,CAAC,UAAU,EAAE,EAAE,EAAE,YAAY,CAAC,CAAA;KACjD;SAAM;QACL,QAAQ,CAAC,SAAS,CAAC,UAAU,EAAE,EAAE,EAAE,YAAY,CAAC,CAAA;QAChD,QAAQ,CAAC,SAAS,CAAC,UAAU,GAAG,CAAC,EAAE,EAAE,EAAE,YAAY,CAAC,CAAA;KACrD;AACH,CAAC;AAhBD,oCAgBC"}
package/dist/index.d.ts CHANGED
@@ -1,3 +1,4 @@
1
+ import './bigint-polyfill/polyfill';
1
2
  export { BigWig } from './bigwig';
2
3
  export { BigBed } from './bigbed';
3
4
  export { Feature, Header, RequestOptions } from './bbi';
package/dist/index.js CHANGED
@@ -1,6 +1,10 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.BigBed = exports.BigWig = void 0;
4
+ // from https://github.com/yume-chan/ya-webadb/blob/main/libraries/dataview-bigint-polyfill
5
+ // license:MIT
6
+ // needed for browsers including safari 14
7
+ require("./bigint-polyfill/polyfill");
4
8
  var bigwig_1 = require("./bigwig");
5
9
  Object.defineProperty(exports, "BigWig", { enumerable: true, get: function () { return bigwig_1.BigWig; } });
6
10
  var bigbed_1 = require("./bigbed");
package/dist/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;AAAA,mCAAiC;AAAxB,gGAAA,MAAM,OAAA;AACf,mCAAiC;AAAxB,gGAAA,MAAM,OAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;AAAA,2FAA2F;AAC3F,cAAc;AACd,0CAA0C;AAC1C,sCAAmC;AACnC,mCAAiC;AAAxB,gGAAA,MAAM,OAAA;AACf,mCAAiC;AAAxB,gGAAA,MAAM,OAAA"}
package/esm/bbi.js CHANGED
@@ -125,7 +125,8 @@ export class BBI {
125
125
  }
126
126
  if (header.totalSummaryOffset) {
127
127
  const tail = buffer.subarray(Number(header.totalSummaryOffset));
128
- header.totalSummary = ret.totalSummaryParser.parse(tail);
128
+ const sum = ret.totalSummaryParser.parse(tail);
129
+ header.totalSummary = { ...sum, basesCovered: Number(sum.basesCovered) };
129
130
  }
130
131
  return { ...header, isBigEndian };
131
132
  }
package/esm/bbi.js.map CHANGED
@@ -1 +1 @@
1
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package/esm/bigint-polyfill/polyfill.d.ts ADDED
@@ -0,0 +1 @@
1
+ export {};
package/esm/bigint-polyfill/polyfill.js ADDED
@@ -0,0 +1,22 @@
1
+ import { getBigInt64, getBigUint64, setBigInt64, setBigUint64 } from './pure';
2
+ if (!('getBigInt64' in DataView)) {
3
+ DataView.prototype.getBigInt64 = function (byteOffset, littleEndian) {
4
+ return getBigInt64(this, byteOffset, littleEndian);
5
+ };
6
+ }
7
+ if (!('getBigUint64' in DataView)) {
8
+ DataView.prototype.getBigUint64 = function (byteOffset, littleEndian) {
9
+ return getBigUint64(this, byteOffset, littleEndian);
10
+ };
11
+ }
12
+ if (!('setBigInt64' in DataView)) {
13
+ DataView.prototype.setBigInt64 = function (byteOffset, value, littleEndian) {
14
+ setBigInt64(this, byteOffset, value, littleEndian);
15
+ };
16
+ }
17
+ if (!('setBigUint64' in DataView)) {
18
+ DataView.prototype.setBigUint64 = function (byteOffset, value, littleEndian) {
19
+ setBigUint64(this, byteOffset, value, littleEndian);
20
+ };
21
+ }
22
+ //# sourceMappingURL=polyfill.js.map
package/esm/bigint-polyfill/polyfill.js.map ADDED
@@ -0,0 +1 @@
1
+ {"version":3,"file":"polyfill.js","sourceRoot":"","sources":["../../src/bigint-polyfill/polyfill.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,YAAY,EAAE,WAAW,EAAE,YAAY,EAAE,MAAM,QAAQ,CAAA;AAE7E,IAAI,CAAC,CAAC,aAAa,IAAI,QAAQ,CAAC,EAAE;IAChC,QAAQ,CAAC,SAAS,CAAC,WAAW,GAAG,UAAU,UAAU,EAAE,YAAY;QACjE,OAAO,WAAW,CAAC,IAAI,EAAE,UAAU,EAAE,YAAY,CAAC,CAAA;IACpD,CAAC,CAAA;CACF;AAED,IAAI,CAAC,CAAC,cAAc,IAAI,QAAQ,CAAC,EAAE;IACjC,QAAQ,CAAC,SAAS,CAAC,YAAY,GAAG,UAAU,UAAU,EAAE,YAAY;QAClE,OAAO,YAAY,CAAC,IAAI,EAAE,UAAU,EAAE,YAAY,CAAC,CAAA;IACrD,CAAC,CAAA;CACF;AAED,IAAI,CAAC,CAAC,aAAa,IAAI,QAAQ,CAAC,EAAE;IAChC,QAAQ,CAAC,SAAS,CAAC,WAAW,GAAG,UAAU,UAAU,EAAE,KAAK,EAAE,YAAY;QACxE,WAAW,CAAC,IAAI,EAAE,UAAU,EAAE,KAAK,EAAE,YAAY,CAAC,CAAA;IACpD,CAAC,CAAA;CACF;AAED,IAAI,CAAC,CAAC,cAAc,IAAI,QAAQ,CAAC,EAAE;IACjC,QAAQ,CAAC,SAAS,CAAC,YAAY,GAAG,UAAU,UAAU,EAAE,KAAK,EAAE,YAAY;QACzE,YAAY,CAAC,IAAI,EAAE,UAAU,EAAE,KAAK,EAAE,YAAY,CAAC,CAAA;IACrD,CAAC,CAAA;CACF"}
package/esm/bigint-polyfill/pure.d.ts ADDED
@@ -0,0 +1,4 @@
1
+ export declare function getBigInt64(dataView: DataView, byteOffset: number, littleEndian: boolean | undefined): bigint;
2
+ export declare function getBigUint64(dataView: DataView, byteOffset: number, littleEndian: boolean | undefined): bigint;
3
+ export declare function setBigInt64(dataView: DataView, byteOffset: number, value: bigint, littleEndian: boolean | undefined): void;
4
+ export declare function setBigUint64(dataView: DataView, byteOffset: number, value: bigint, littleEndian: boolean | undefined): void;
package/esm/bigint-polyfill/pure.js ADDED
@@ -0,0 +1,46 @@
1
+ const BigInt32 = BigInt(32);
2
+ export function getBigInt64(dataView, byteOffset, littleEndian) {
3
+ const littleEndianMask = Number(!!littleEndian);
4
+ const bigEndianMask = Number(!littleEndian);
5
+ return ((BigInt(dataView.getInt32(byteOffset, littleEndian) * bigEndianMask +
6
+ dataView.getInt32(byteOffset + 4, littleEndian) * littleEndianMask) <<
7
+ BigInt32) |
8
+ BigInt(dataView.getUint32(byteOffset, littleEndian) * littleEndianMask +
9
+ dataView.getUint32(byteOffset + 4, littleEndian) * bigEndianMask));
10
+ }
11
+ export function getBigUint64(dataView, byteOffset, littleEndian) {
12
+ const a = dataView.getUint32(byteOffset, littleEndian);
13
+ const b = dataView.getUint32(byteOffset + 4, littleEndian);
14
+ const littleEndianMask = Number(!!littleEndian);
15
+ const bigEndianMask = Number(!littleEndian);
16
+ // This branch-less optimization is 77x faster than normal ternary operator.
17
+ // and only 3% slower than native implementation
18
+ // https://jsbench.me/p8kyhg1eqv/1
19
+ return ((BigInt(a * bigEndianMask + b * littleEndianMask) << BigInt32) |
20
+ BigInt(a * littleEndianMask + b * bigEndianMask));
21
+ }
22
+ export function setBigInt64(dataView, byteOffset, value, littleEndian) {
23
+ const hi = Number(value >> BigInt32);
24
+ const lo = Number(value & BigInt(0xffffffff));
25
+ if (littleEndian) {
26
+ dataView.setInt32(byteOffset + 4, hi, littleEndian);
27
+ dataView.setUint32(byteOffset, lo, littleEndian);
28
+ }
29
+ else {
30
+ dataView.setInt32(byteOffset, hi, littleEndian);
31
+ dataView.setUint32(byteOffset + 4, lo, littleEndian);
32
+ }
33
+ }
34
+ export function setBigUint64(dataView, byteOffset, value, littleEndian) {
35
+ const hi = Number(value >> BigInt32);
36
+ const lo = Number(value & BigInt(0xffffffff));
37
+ if (littleEndian) {
38
+ dataView.setUint32(byteOffset + 4, hi, littleEndian);
39
+ dataView.setUint32(byteOffset, lo, littleEndian);
40
+ }
41
+ else {
42
+ dataView.setUint32(byteOffset, hi, littleEndian);
43
+ dataView.setUint32(byteOffset + 4, lo, littleEndian);
44
+ }
45
+ }
46
+ //# sourceMappingURL=pure.js.map
package/esm/bigint-polyfill/pure.js.map ADDED
@@ -0,0 +1 @@
1
+ {"version":3,"file":"pure.js","sourceRoot":"","sources":["../../src/bigint-polyfill/pure.ts"],"names":[],"mappings":"AAAA,MAAM,QAAQ,GAAG,MAAM,CAAC,EAAE,CAAC,CAAA;AAE3B,MAAM,UAAU,WAAW,CACzB,QAAkB,EAClB,UAAkB,EAClB,YAAiC;IAEjC,MAAM,gBAAgB,GAAG,MAAM,CAAC,CAAC,CAAC,YAAY,CAAC,CAAA;IAC/C,MAAM,aAAa,GAAG,MAAM,CAAC,CAAC,YAAY,CAAC,CAAA;IAE3C,OAAO,CACL,CAAC,MAAM,CACL,QAAQ,CAAC,QAAQ,CAAC,UAAU,EAAE,YAAY,CAAC,GAAG,aAAa;QACzD,QAAQ,CAAC,QAAQ,CAAC,UAAU,GAAG,CAAC,EAAE,YAAY,CAAC,GAAG,gBAAgB,CACrE;QACC,QAAQ,CAAC;QACX,MAAM,CACJ,QAAQ,CAAC,SAAS,CAAC,UAAU,EAAE,YAAY,CAAC,GAAG,gBAAgB;YAC7D,QAAQ,CAAC,SAAS,CAAC,UAAU,GAAG,CAAC,EAAE,YAAY,CAAC,GAAG,aAAa,CACnE,CACF,CAAA;AACH,CAAC;AAED,MAAM,UAAU,YAAY,CAC1B,QAAkB,EAClB,UAAkB,EAClB,YAAiC;IAEjC,MAAM,CAAC,GAAG,QAAQ,CAAC,SAAS,CAAC,UAAU,EAAE,YAAY,CAAC,CAAA;IACtD,MAAM,CAAC,GAAG,QAAQ,CAAC,SAAS,CAAC,UAAU,GAAG,CAAC,EAAE,YAAY,CAAC,CAAA;IAE1D,MAAM,gBAAgB,GAAG,MAAM,CAAC,CAAC,CAAC,YAAY,CAAC,CAAA;IAC/C,MAAM,aAAa,GAAG,MAAM,CAAC,CAAC,YAAY,CAAC,CAAA;IAE3C,4EAA4E;IAC5E,gDAAgD;IAChD,kCAAkC;IAClC,OAAO,CACL,CAAC,MAAM,CAAC,CAAC,GAAG,aAAa,GAAG,CAAC,GAAG,gBAAgB,CAAC,IAAI,QAAQ,CAAC;QAC9D,MAAM,CAAC,CAAC,GAAG,gBAAgB,GAAG,CAAC,GAAG,aAAa,CAAC,CACjD,CAAA;AACH,CAAC;AAED,MAAM,UAAU,WAAW,CACzB,QAAkB,EAClB,UAAkB,EAClB,KAAa,EACb,YAAiC;IAEjC,MAAM,EAAE,GAAG,MAAM,CAAC,KAAK,IAAI,QAAQ,CAAC,CAAA;IACpC,MAAM,EAAE,GAAG,MAAM,CAAC,KAAK,GAAG,MAAM,CAAC,UAAU,CAAC,CAAC,CAAA;IAE7C,IAAI,YAAY,EAAE;QAChB,QAAQ,CAAC,QAAQ,CAAC,UAAU,GAAG,CAAC,EAAE,EAAE,EAAE,YAAY,CAAC,CAAA;QACnD,QAAQ,CAAC,SAAS,CAAC,UAAU,EAAE,EAAE,EAAE,YAAY,CAAC,CAAA;KACjD;SAAM;QACL,QAAQ,CAAC,QAAQ,CAAC,UAAU,EAAE,EAAE,EAAE,YAAY,CAAC,CAAA;QAC/C,QAAQ,CAAC,SAAS,CAAC,UAAU,GAAG,CAAC,EAAE,EAAE,EAAE,YAAY,CAAC,CAAA;KACrD;AACH,CAAC;AAED,MAAM,UAAU,YAAY,CAC1B,QAAkB,EAClB,UAAkB,EAClB,KAAa,EACb,YAAiC;IAEjC,MAAM,EAAE,GAAG,MAAM,CAAC,KAAK,IAAI,QAAQ,CAAC,CAAA;IACpC,MAAM,EAAE,GAAG,MAAM,CAAC,KAAK,GAAG,MAAM,CAAC,UAAU,CAAC,CAAC,CAAA;IAE7C,IAAI,YAAY,EAAE;QAChB,QAAQ,CAAC,SAAS,CAAC,UAAU,GAAG,CAAC,EAAE,EAAE,EAAE,YAAY,CAAC,CAAA;QACpD,QAAQ,CAAC,SAAS,CAAC,UAAU,EAAE,EAAE,EAAE,YAAY,CAAC,CAAA;KACjD;SAAM;QACL,QAAQ,CAAC,SAAS,CAAC,UAAU,EAAE,EAAE,EAAE,YAAY,CAAC,CAAA;QAChD,QAAQ,CAAC,SAAS,CAAC,UAAU,GAAG,CAAC,EAAE,EAAE,EAAE,YAAY,CAAC,CAAA;KACrD;AACH,CAAC"}
package/esm/index.d.ts CHANGED
@@ -1,3 +1,4 @@
1
+ import './bigint-polyfill/polyfill';
1
2
  export { BigWig } from './bigwig';
2
3
  export { BigBed } from './bigbed';
3
4
  export { Feature, Header, RequestOptions } from './bbi';
package/esm/index.js CHANGED
@@ -1,3 +1,7 @@
1
+ // from https://github.com/yume-chan/ya-webadb/blob/main/libraries/dataview-bigint-polyfill
2
+ // license:MIT
3
+ // needed for browsers including safari 14
4
+ import './bigint-polyfill/polyfill';
1
5
  export { BigWig } from './bigwig';
2
6
  export { BigBed } from './bigbed';
3
7
  //# sourceMappingURL=index.js.map
package/esm/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,UAAU,CAAA;AACjC,OAAO,EAAE,MAAM,EAAE,MAAM,UAAU,CAAA"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,2FAA2F;AAC3F,cAAc;AACd,0CAA0C;AAC1C,OAAO,4BAA4B,CAAA;AACnC,OAAO,EAAE,MAAM,EAAE,MAAM,UAAU,CAAA;AACjC,OAAO,EAAE,MAAM,EAAE,MAAM,UAAU,CAAA"}
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@gmod/bbi",
3
- "version": "2.0.1",
3
+ "version": "2.0.3",
4
4
  "description": "Parser for BigWig/BigBed files",
5
5
  "license": "MIT",
6
6
  "repository": "GMOD/bbi-js",
package/src/bbi.ts CHANGED
@@ -199,7 +199,8 @@ export abstract class BBI {
199
199
  }
200
200
  if (header.totalSummaryOffset) {
201
201
  const tail = buffer.subarray(Number(header.totalSummaryOffset))
202
- header.totalSummary = ret.totalSummaryParser.parse(tail)
202
+ const sum = ret.totalSummaryParser.parse(tail)
203
+ header.totalSummary = { ...sum, basesCovered: Number(sum.basesCovered) }
203
204
  }
204
205
  return { ...header, isBigEndian }
205
206
  }
package/src/bigint-polyfill/polyfill.ts ADDED
@@ -0,0 +1,25 @@
1
+ import { getBigInt64, getBigUint64, setBigInt64, setBigUint64 } from './pure'
2
+
3
+ if (!('getBigInt64' in DataView)) {
4
+ DataView.prototype.getBigInt64 = function (byteOffset, littleEndian) {
5
+ return getBigInt64(this, byteOffset, littleEndian)
6
+ }
7
+ }
8
+
9
+ if (!('getBigUint64' in DataView)) {
10
+ DataView.prototype.getBigUint64 = function (byteOffset, littleEndian) {
11
+ return getBigUint64(this, byteOffset, littleEndian)
12
+ }
13
+ }
14
+
15
+ if (!('setBigInt64' in DataView)) {
16
+ DataView.prototype.setBigInt64 = function (byteOffset, value, littleEndian) {
17
+ setBigInt64(this, byteOffset, value, littleEndian)
18
+ }
19
+ }
20
+
21
+ if (!('setBigUint64' in DataView)) {
22
+ DataView.prototype.setBigUint64 = function (byteOffset, value, littleEndian) {
23
+ setBigUint64(this, byteOffset, value, littleEndian)
24
+ }
25
+ }
package/src/bigint-polyfill/pure.ts ADDED
@@ -0,0 +1,78 @@
1
+ const BigInt32 = BigInt(32)
2
+
3
+ export function getBigInt64(
4
+ dataView: DataView,
5
+ byteOffset: number,
6
+ littleEndian: boolean | undefined,
7
+ ): bigint {
8
+ const littleEndianMask = Number(!!littleEndian)
9
+ const bigEndianMask = Number(!littleEndian)
10
+
11
+ return (
12
+ (BigInt(
13
+ dataView.getInt32(byteOffset, littleEndian) * bigEndianMask +
14
+ dataView.getInt32(byteOffset + 4, littleEndian) * littleEndianMask,
15
+ ) <<
16
+ BigInt32) |
17
+ BigInt(
18
+ dataView.getUint32(byteOffset, littleEndian) * littleEndianMask +
19
+ dataView.getUint32(byteOffset + 4, littleEndian) * bigEndianMask,
20
+ )
21
+ )
22
+ }
23
+
24
+ export function getBigUint64(
25
+ dataView: DataView,
26
+ byteOffset: number,
27
+ littleEndian: boolean | undefined,
28
+ ): bigint {
29
+ const a = dataView.getUint32(byteOffset, littleEndian)
30
+ const b = dataView.getUint32(byteOffset + 4, littleEndian)
31
+
32
+ const littleEndianMask = Number(!!littleEndian)
33
+ const bigEndianMask = Number(!littleEndian)
34
+
35
+ // This branch-less optimization is 77x faster than normal ternary operator.
36
+ // and only 3% slower than native implementation
37
+ // https://jsbench.me/p8kyhg1eqv/1
38
+ return (
39
+ (BigInt(a * bigEndianMask + b * littleEndianMask) << BigInt32) |
40
+ BigInt(a * littleEndianMask + b * bigEndianMask)
41
+ )
42
+ }
43
+
44
+ export function setBigInt64(
45
+ dataView: DataView,
46
+ byteOffset: number,
47
+ value: bigint,
48
+ littleEndian: boolean | undefined,
49
+ ) {
50
+ const hi = Number(value >> BigInt32)
51
+ const lo = Number(value & BigInt(0xffffffff))
52
+
53
+ if (littleEndian) {
54
+ dataView.setInt32(byteOffset + 4, hi, littleEndian)
55
+ dataView.setUint32(byteOffset, lo, littleEndian)
56
+ } else {
57
+ dataView.setInt32(byteOffset, hi, littleEndian)
58
+ dataView.setUint32(byteOffset + 4, lo, littleEndian)
59
+ }
60
+ }
61
+
62
+ export function setBigUint64(
63
+ dataView: DataView,
64
+ byteOffset: number,
65
+ value: bigint,
66
+ littleEndian: boolean | undefined,
67
+ ) {
68
+ const hi = Number(value >> BigInt32)
69
+ const lo = Number(value & BigInt(0xffffffff))
70
+
71
+ if (littleEndian) {
72
+ dataView.setUint32(byteOffset + 4, hi, littleEndian)
73
+ dataView.setUint32(byteOffset, lo, littleEndian)
74
+ } else {
75
+ dataView.setUint32(byteOffset, hi, littleEndian)
76
+ dataView.setUint32(byteOffset + 4, lo, littleEndian)
77
+ }
78
+ }
package/src/index.ts CHANGED
@@ -1,3 +1,7 @@
1
+ // from https://github.com/yume-chan/ya-webadb/blob/main/libraries/dataview-bigint-polyfill
2
+ // license:MIT
3
+ // needed for browsers including safari 14
4
+ import './bigint-polyfill/polyfill'
1
5
  export { BigWig } from './bigwig'
2
6
  export { BigBed } from './bigbed'
3
7
  export { Feature, Header, RequestOptions } from './bbi'