@gmod/bbi 1.0.34 → 1.0.35
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +8 -8
- package/dist/bbi.js +2 -1
- package/dist/bbi.js.map +1 -0
- package/dist/bigbed.js +1 -0
- package/dist/bigbed.js.map +1 -0
- package/dist/bigwig.js +1 -0
- package/dist/bigwig.js.map +1 -0
- package/dist/blockView.js +1 -0
- package/dist/blockView.js.map +1 -0
- package/dist/index.js +1 -0
- package/dist/index.js.map +1 -0
- package/dist/range.js +2 -0
- package/dist/range.js.map +1 -0
- package/dist/unzip-pako.js +1 -0
- package/dist/unzip-pako.js.map +1 -0
- package/dist/unzip.js +1 -0
- package/dist/unzip.js.map +1 -0
- package/dist/util.js +1 -0
- package/dist/util.js.map +1 -0
- package/esm/bbi.js +23 -29
- package/esm/bbi.js.map +1 -0
- package/esm/bigbed.js +22 -29
- package/esm/bigbed.js.map +1 -0
- package/esm/bigwig.js +5 -8
- package/esm/bigwig.js.map +1 -0
- package/esm/blockView.js +32 -38
- package/esm/blockView.js.map +1 -0
- package/esm/index.js +3 -7
- package/esm/index.js.map +1 -0
- package/esm/range.js +3 -4
- package/esm/range.js.map +1 -0
- package/esm/unzip-pako.js +4 -7
- package/esm/unzip-pako.js.map +1 -0
- package/esm/unzip.js +3 -5
- package/esm/unzip.js.map +1 -0
- package/esm/util.js +5 -11
- package/esm/util.js.map +1 -0
- package/package.json +5 -4
- package/src/bbi.ts +380 -0
- package/src/bigbed.ts +239 -0
- package/src/bigwig.ts +46 -0
- package/src/blockView.ts +462 -0
- package/src/declare.d.ts +4 -0
- package/src/index.ts +3 -0
- package/src/range.ts +142 -0
- package/src/unzip-pako.ts +5 -0
- package/src/unzip.ts +2 -0
- package/src/util.ts +74 -0
package/esm/blockView.js
CHANGED
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@@ -1,21 +1,15 @@
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-
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const binary_parser_1 = require("@gmod/binary-parser");
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8
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const abortable_promise_cache_1 = __importDefault(require("abortable-promise-cache"));
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const unzip_1 = require("./unzip");
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const quick_lru_1 = __importDefault(require("quick-lru"));
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const range_1 = __importDefault(require("./range"));
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-
const util_1 = require("./util");
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import { Parser } from '@gmod/binary-parser';
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import AbortablePromiseCache from 'abortable-promise-cache';
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import { unzip } from './unzip';
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import QuickLRU from 'quick-lru';
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import Range from './range';
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import { groupBlocks, checkAbortSignal } from './util';
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const BIG_WIG_TYPE_GRAPH = 1;
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const BIG_WIG_TYPE_VSTEP = 2;
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const BIG_WIG_TYPE_FSTEP = 3;
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function getParsers(isBigEndian) {
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const le = isBigEndian ? 'big' : 'little';
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const summaryParser = new
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const summaryParser = new Parser()
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.endianess(le)
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.uint32('chromId')
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.uint32('start')
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@@ -25,7 +19,7 @@ function getParsers(isBigEndian) {
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.float('maxScore')
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.float('sumData')
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.float('sumSqData');
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const leafParser = new
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const leafParser = new Parser()
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.endianess(le)
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.uint8('isLeaf')
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.skip(1)
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@@ -33,9 +27,9 @@ function getParsers(isBigEndian) {
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.choice({
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tag: 'isLeaf',
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choices: {
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1: new
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1: new Parser().array('blocksToFetch', {
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length: 'cnt',
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type: new
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type: new Parser()
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.uint32('startChrom')
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.uint32('startBase')
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.uint32('endChrom')
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@@ -43,9 +37,9 @@ function getParsers(isBigEndian) {
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.uint64('blockOffset')
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.uint64('blockSize'),
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}),
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0: new
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0: new Parser().array('recurOffsets', {
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length: 'cnt',
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type: new
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type: new Parser()
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.uint32('startChrom')
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.uint32('startBase')
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.uint32('endChrom')
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@@ -54,7 +48,7 @@ function getParsers(isBigEndian) {
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}),
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},
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});
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const bigBedParser = new
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const bigBedParser = new Parser()
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.endianess(le)
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.uint32('chromId')
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.int32('start')
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@@ -62,7 +56,7 @@ function getParsers(isBigEndian) {
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.string('rest', {
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zeroTerminated: true,
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});
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const bigWigParser = new
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const bigWigParser = new Parser()
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.endianess(le)
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.skip(4)
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.int32('blockStart')
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@@ -75,17 +69,17 @@ function getParsers(isBigEndian) {
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.choice({
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tag: 'blockType',
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choices: {
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[BIG_WIG_TYPE_FSTEP]: new
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[BIG_WIG_TYPE_FSTEP]: new Parser().array('items', {
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length: 'itemCount',
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type: new
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type: new Parser().float('score'),
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}),
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[BIG_WIG_TYPE_VSTEP]: new
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[BIG_WIG_TYPE_VSTEP]: new Parser().array('items', {
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length: 'itemCount',
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type: new
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type: new Parser().int32('start').float('score'),
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}),
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[BIG_WIG_TYPE_GRAPH]: new
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[BIG_WIG_TYPE_GRAPH]: new Parser().array('items', {
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length: 'itemCount',
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type: new
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type: new Parser().int32('start').int32('end').float('score'),
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}),
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},
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});
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@@ -103,10 +97,10 @@ function getParsers(isBigEndian) {
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* Explorer by Thomas Down.
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* @constructs
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*/
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class BlockView {
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export class BlockView {
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constructor(bbi, refsByName, cirTreeOffset, cirTreeLength, isBigEndian, isCompressed, blockType) {
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this.featureCache = new
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cache: new
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this.featureCache = new AbortablePromiseCache({
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cache: new QuickLRU({ maxSize: 1000 }),
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fill: async (requestData, signal) => {
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const { length, offset } = requestData;
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const { buffer } = await this.bbi.read(Buffer.alloc(length), 0, length, offset, { signal });
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@@ -199,9 +193,9 @@ class BlockView {
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try {
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outstanding += offset.length;
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const maxCirBlockSpan = 4 + cirBlockSize * 32; // Upper bound on size, based on a completely full leaf node.
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let spans = new
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let spans = new Range(offset[0], offset[0] + maxCirBlockSpan);
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for (let i = 1; i < offset.length; i += 1) {
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const blockSpan = new
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const blockSpan = new Range(offset[i], offset[i] + maxCirBlockSpan);
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spans = spans.union(blockSpan);
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}
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spans.getRanges().map(fr => cirFobStartFetch(offset, fr, level));
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@@ -279,21 +273,21 @@ class BlockView {
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try {
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const { blockType, isCompressed } = this;
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const { signal, request } = opts;
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const blockGroupsToFetch =
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const blockGroupsToFetch = groupBlocks(blocks);
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checkAbortSignal(signal);
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await Promise.all(blockGroupsToFetch.map(async (blockGroup) => {
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checkAbortSignal(signal);
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const { length, offset } = blockGroup;
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const data = await this.featureCache.get(`${length}_${offset}`, blockGroup, signal);
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blockGroup.blocks.forEach((block) => {
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checkAbortSignal(signal);
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let blockOffset = block.offset - blockGroup.offset;
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let resultData = data;
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if (isCompressed) {
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resultData =
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resultData = unzip(data.slice(blockOffset));
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blockOffset = 0;
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}
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checkAbortSignal(signal);
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switch (blockType) {
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case 'summary':
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observer.next(this.parseSummaryBlock(resultData, blockOffset, request));
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@@ -318,4 +312,4 @@ class BlockView {
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}
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}
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}
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//# sourceMappingURL=blockView.js.map
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@@ -0,0 +1 @@
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|
+
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|
package/esm/index.js
CHANGED
|
@@ -1,7 +1,3 @@
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|
|
1
|
-
|
|
2
|
-
|
|
3
|
-
|
|
4
|
-
var bigwig_1 = require("./bigwig");
|
|
5
|
-
Object.defineProperty(exports, "BigWig", { enumerable: true, get: function () { return bigwig_1.BigWig; } });
|
|
6
|
-
var bigbed_1 = require("./bigbed");
|
|
7
|
-
Object.defineProperty(exports, "BigBed", { enumerable: true, get: function () { return bigbed_1.BigBed; } });
|
|
1
|
+
export { BigWig } from './bigwig';
|
|
2
|
+
export { BigBed } from './bigbed';
|
|
3
|
+
//# sourceMappingURL=index.js.map
|
package/esm/index.js.map
ADDED
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,UAAU,CAAA;AACjC,OAAO,EAAE,MAAM,EAAE,MAAM,UAAU,CAAA"}
|
package/esm/range.js
CHANGED
|
@@ -1,11 +1,9 @@
|
|
|
1
|
-
"use strict";
|
|
2
1
|
/* eslint prefer-rest-params:0, no-nested-ternary:0 */
|
|
3
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
4
2
|
/**
|
|
5
3
|
* Adapted from a combination of Range and _Compound in the
|
|
6
4
|
* Dalliance Genome Explorer, (c) Thomas Down 2006-2010.
|
|
7
5
|
*/
|
|
8
|
-
class Range {
|
|
6
|
+
export default class Range {
|
|
9
7
|
constructor(arg1, arg2) {
|
|
10
8
|
this.ranges =
|
|
11
9
|
arguments.length === 2
|
|
@@ -106,6 +104,7 @@ class Range {
|
|
|
106
104
|
let b = tmpb;
|
|
107
105
|
if (arguments.length < 2) {
|
|
108
106
|
b = a;
|
|
107
|
+
// eslint-disable-next-line @typescript-eslint/no-this-alias
|
|
109
108
|
a = this;
|
|
110
109
|
}
|
|
111
110
|
if (a.min() < b.min()) {
|
|
@@ -123,4 +122,4 @@ class Range {
|
|
|
123
122
|
return 0;
|
|
124
123
|
}
|
|
125
124
|
}
|
|
126
|
-
|
|
125
|
+
//# sourceMappingURL=range.js.map
|
package/esm/range.js.map
ADDED
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"range.js","sourceRoot":"","sources":["../src/range.ts"],"names":[],"mappings":"AAAA,sDAAsD;AAEtD;;;GAGG;AACH,MAAM,CAAC,OAAO,OAAO,KAAK;IAGxB,YAAmB,IAAS,EAAE,IAAU;QACtC,IAAI,CAAC,MAAM;YACT,SAAS,CAAC,MAAM,KAAK,CAAC;gBACpB,CAAC,CAAC,CAAC,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,EAAE,IAAI,EAAE,CAAC;gBAC5B,CAAC,CAAC,CAAC,IAAI,IAAI;oBACX,CAAC,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,EAAE,IAAI,CAAC;oBACzB,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;IACd,CAAC;IAEM,GAAG;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,GAAG,CAAA;IAC3B,CAAC;IAEM,GAAG;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,GAAG,CAAA;IAChD,CAAC;IAEM,QAAQ,CAAC,GAAW;QACzB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE;YAC9C,MAAM,CAAC,GAAG,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CAAA;YACxB,IAAI,CAAC,CAAC,GAAG,IAAI,GAAG,IAAI,CAAC,CAAC,GAAG,IAAI,GAAG,EAAE;gBAChC,OAAO,IAAI,CAAA;aACZ;SACF;QACD,OAAO,KAAK,CAAA;IACd,CAAC;IAEM,YAAY;QACjB,OAAO,IAAI,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC,CAAA;IAC/B,CAAC;IAEM,SAAS;QACd,OAAO,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAQ,EAAE,EAAE,CAAC,IAAI,KAAK,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAA;IAC/D,CAAC;IAEM,QAAQ;QACb,OAAO,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAQ,EAAE,EAAE,CAAC,IAAI,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;IACvE,CAAC;IAEM,KAAK,CAAC,EAAS;QACpB,MAAM,MAAM,GAAG,IAAI,CAAC,SAAS,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,SAAS,EAAE,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,CAAA;QAC5E,MAAM,OAAO,GAAG,EAAE,CAAA;QAClB,IAAI,OAAO,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;QAEvB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE;YACzC,MAAM,GAAG,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;YACrB,IAAI,GAAG,CAAC,GAAG,EAAE,GAAG,OAAO,CAAC,GAAG,EAAE,GAAG,CAAC,EAAE;gBACjC,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,CAAA;gBACrB,OAAO,GAAG,GAAG,CAAA;aACd;iBAAM,IAAI,GAAG,CAAC,GAAG,EAAE,GAAG,OAAO,CAAC,GAAG,EAAE,EAAE;gBACpC,OAAO,GAAG,IAAI,KAAK,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,GAAG,CAAC,GAAG,EAAE,CAAC,CAAA;aAC9C;SACF;QACD,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,CAAA;QAErB,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE;YACxB,OAAO,OAAO,CAAC,CAAC,CAAC,CAAA;SAClB;QACD,OAAO,IAAI,KAAK,CAAC,OAAO,CAAC,CAAA;IAC3B,CAAC;IAEM,YAAY,CAAC,GAAU;QAC5B,4DAA4D;QAC5D,IAAI,EAAE,GAAG,IAAI,CAAA;QACb,IAAI,EAAE,GAAG,GAAG,CAAA;QACZ,MAAM,EAAE,GAAG,IAAI,CAAC,MAAM,EAAE,CAAA;QACxB,MAAM,EAAE,GAAG,EAAE,CAAC,MAAM,EAAE,CAAA;QACtB,MAAM,EAAE,GAAG,EAAE,CAAC,MAAM,CAAA;QAEpB,MAAM,EAAE,GAAG,EAAE,CAAC,MAAM,CAAA;QACpB,IAAI,EAAE,GAAG,CAAC,CAAA;QAEV,IAAI,EAAE,GAAG,CAAC,CAAA;QACV,MAAM,EAAE,GAAG,EAAE,CAAA;QAEb,OAAO,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,EAAE,EAAE;YACzB,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,CAAA;YACX,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,CAAA;YACX,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,GAAG,EAAE,CAAC,CAAA;YAC3C,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,GAAG,EAAE,CAAC,CAAA;YAC3C,IAAI,MAAM,IAAI,MAAM,EAAE;gBACpB,EAAE,CAAC,IAAI,CAAC,IAAI,KAAK,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC,CAAA;aACnC;YACD,IAAI,EAAE,CAAC,GAAG,EAAE,GAAG,EAAE,CAAC,GAAG,EAAE,EAAE;gBACvB,EAAE,IAAI,CAAC,CAAA;aACR;iBAAM;gBACL,EAAE,IAAI,CAAC,CAAA;aACR;SACF;QAED,IAAI,EAAE,CAAC,MAAM,KAAK,CAAC,EAAE;YACnB,MAAM,IAAI,KAAK,CAAC,yBAAyB,CAAC,CAAA;SAC3C;QACD,IAAI,EAAE,CAAC,MAAM,KAAK,CAAC,EAAE;YACnB,OAAO,EAAE,CAAC,CAAC,CAAC,CAAA;SACb;QACD,OAAO,IAAI,KAAK,CAAC,EAAE,CAAC,CAAA;IACtB,CAAC;IAEM,QAAQ;QACb,IAAI,GAAG,GAAG,CAAC,CAAA;QACX,MAAM,EAAE,GAAG,IAAI,CAAC,MAAM,EAAE,CAAA;QACxB,KAAK,IAAI,EAAE,GAAG,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,MAAM,EAAE,EAAE,IAAI,CAAC,EAAE;YACxC,MAAM,CAAC,GAAG,EAAE,CAAC,EAAE,CAAC,CAAA;YAChB,GAAG,IAAI,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAA;SAC7B;QACD,OAAO,GAAG,CAAA;IACZ,CAAC;IAEM,UAAU,CAAC,IAAW,EAAE,IAAW;QACxC,IAAI,CAAC,GAAG,IAAI,CAAA;QACZ,IAAI,CAAC,GAAG,IAAI,CAAA;QACZ,IAAI,SAAS,CAAC,MAAM,GAAG,CAAC,EAAE;YACxB,CAAC,GAAG,CAAC,CAAA;YACL,4DAA4D;YAC5D,CAAC,GAAG,IAAI,CAAA;SACT;QAED,IAAI,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE;YACrB,OAAO,CAAC,CAAC,CAAA;SACV;QACD,IAAI,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE;YACrB,OAAO,CAAC,CAAA;SACT;QACD,IAAI,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE;YACrB,OAAO,CAAC,CAAC,CAAA;SACV;QACD,IAAI,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE;YACrB,OAAO,CAAC,CAAA;SACT;QACD,OAAO,CAAC,CAAA;IACV,CAAC;CACF"}
|
package/esm/unzip-pako.js
CHANGED
|
@@ -1,8 +1,5 @@
|
|
|
1
|
-
|
|
2
|
-
|
|
3
|
-
|
|
4
|
-
const pako_1 = require("pako");
|
|
5
|
-
function unzip(input) {
|
|
6
|
-
return Buffer.from((0, pako_1.inflate)(input));
|
|
1
|
+
import { inflate } from 'pako';
|
|
2
|
+
export function unzip(input) {
|
|
3
|
+
return Buffer.from(inflate(input));
|
|
7
4
|
}
|
|
8
|
-
|
|
5
|
+
//# sourceMappingURL=unzip-pako.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"unzip-pako.js","sourceRoot":"","sources":["../src/unzip-pako.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAE9B,MAAM,UAAU,KAAK,CAAC,KAAa;IACjC,OAAO,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAA;AACpC,CAAC"}
|
package/esm/unzip.js
CHANGED
|
@@ -1,5 +1,3 @@
|
|
|
1
|
-
|
|
2
|
-
|
|
3
|
-
|
|
4
|
-
const zlib_1 = require("zlib");
|
|
5
|
-
Object.defineProperty(exports, "unzip", { enumerable: true, get: function () { return zlib_1.inflateSync; } });
|
|
1
|
+
import { inflateSync } from 'zlib';
|
|
2
|
+
export { inflateSync as unzip };
|
|
3
|
+
//# sourceMappingURL=unzip.js.map
|
package/esm/unzip.js.map
ADDED
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"unzip.js","sourceRoot":"","sources":["../src/unzip.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,MAAM,CAAA;AAClC,OAAO,EAAE,WAAW,IAAI,KAAK,EAAE,CAAA"}
|
package/esm/util.js
CHANGED
|
@@ -1,17 +1,13 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
exports.abortBreakPoint = exports.checkAbortSignal = exports.groupBlocks = exports.AbortError = void 0;
|
|
4
1
|
/* eslint no-bitwise: ["error", { "allow": ["|"] }] */
|
|
5
|
-
class AbortError extends Error {
|
|
2
|
+
export class AbortError extends Error {
|
|
6
3
|
constructor(message) {
|
|
7
4
|
super(message);
|
|
8
5
|
this.code = 'ERR_ABORTED';
|
|
9
6
|
}
|
|
10
7
|
}
|
|
11
|
-
exports.AbortError = AbortError;
|
|
12
8
|
// sort blocks by file offset and
|
|
13
9
|
// group blocks that are within 2KB of eachother
|
|
14
|
-
function groupBlocks(blocks) {
|
|
10
|
+
export function groupBlocks(blocks) {
|
|
15
11
|
blocks.sort((b0, b1) => (b0.offset | 0) - (b1.offset | 0));
|
|
16
12
|
const blockGroups = [];
|
|
17
13
|
let lastBlock;
|
|
@@ -32,7 +28,6 @@ function groupBlocks(blocks) {
|
|
|
32
28
|
}
|
|
33
29
|
return blockGroups;
|
|
34
30
|
}
|
|
35
|
-
exports.groupBlocks = groupBlocks;
|
|
36
31
|
/**
|
|
37
32
|
* Properly check if the given AbortSignal is aborted.
|
|
38
33
|
* Per the standard, if the signal reads as aborted,
|
|
@@ -44,7 +39,7 @@ exports.groupBlocks = groupBlocks;
|
|
|
44
39
|
* @param {AbortSignal} [signal] an AbortSignal, or anything with an `aborted` attribute
|
|
45
40
|
* @returns nothing
|
|
46
41
|
*/
|
|
47
|
-
function checkAbortSignal(signal) {
|
|
42
|
+
export function checkAbortSignal(signal) {
|
|
48
43
|
if (!signal) {
|
|
49
44
|
return;
|
|
50
45
|
}
|
|
@@ -60,15 +55,14 @@ function checkAbortSignal(signal) {
|
|
|
60
55
|
}
|
|
61
56
|
}
|
|
62
57
|
}
|
|
63
|
-
exports.checkAbortSignal = checkAbortSignal;
|
|
64
58
|
/**
|
|
65
59
|
* Skips to the next tick, then runs `checkAbortSignal`.
|
|
66
60
|
* Await this to inside an otherwise synchronous loop to
|
|
67
61
|
* provide a place to break when an abort signal is received.
|
|
68
62
|
* @param {AbortSignal} signal
|
|
69
63
|
*/
|
|
70
|
-
async function abortBreakPoint(signal) {
|
|
64
|
+
export async function abortBreakPoint(signal) {
|
|
71
65
|
await Promise.resolve();
|
|
72
66
|
checkAbortSignal(signal);
|
|
73
67
|
}
|
|
74
|
-
|
|
68
|
+
//# sourceMappingURL=util.js.map
|
package/esm/util.js.map
ADDED
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":"AAAA,sDAAsD;AACtD,MAAM,OAAO,UAAW,SAAQ,KAAK;IAGnC,YAAmB,OAAe;QAChC,KAAK,CAAC,OAAO,CAAC,CAAA;QACd,IAAI,CAAC,IAAI,GAAG,aAAa,CAAA;IAC3B,CAAC;CACF;AACD,iCAAiC;AACjC,gDAAgD;AAChD,MAAM,UAAU,WAAW,CAAC,MAAa;IACvC,MAAM,CAAC,IAAI,CAAC,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC,CAAC,EAAE,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAA;IAE1D,MAAM,WAAW,GAAG,EAAE,CAAA;IACtB,IAAI,SAAS,CAAA;IACb,IAAI,YAAY,CAAA;IAChB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE;QACzC,IAAI,SAAS,IAAI,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,GAAG,YAAY,IAAI,IAAI,EAAE;YACxD,SAAS,CAAC,MAAM,IAAI,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,GAAG,YAAY,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,CAAA;YACtE,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAA;SACjC;aAAM;YACL,WAAW,CAAC,IAAI,CACd,CAAC,SAAS,GAAG;gBACX,MAAM,EAAE,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;gBACnB,MAAM,EAAE,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM;gBACxB,MAAM,EAAE,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM;aACzB,CAAC,CACH,CAAA;SACF;QACD,YAAY,GAAG,SAAS,CAAC,MAAM,GAAG,SAAS,CAAC,MAAM,CAAA;KACnD;IAED,OAAO,WAAW,CAAA;AACpB,CAAC;AAED;;;;;;;;;;GAUG;AACH,MAAM,UAAU,gBAAgB,CAAC,MAAoB;IACnD,IAAI,CAAC,MAAM,EAAE;QACX,OAAM;KACP;IAED,IAAI,MAAM,CAAC,OAAO,EAAE;QAClB,8BAA8B;QAC9B,IAAI,OAAO,YAAY,KAAK,WAAW,EAAE;YACvC,MAAM,IAAI,YAAY,CAAC,SAAS,EAAE,YAAY,CAAC,CAAA;SAChD;aAAM;YACL,MAAM,CAAC,GAAG,IAAI,UAAU,CAAC,SAAS,CAAC,CAAA;YACnC,CAAC,CAAC,IAAI,GAAG,aAAa,CAAA;YACtB,MAAM,CAAC,CAAA;SACR;KACF;AACH,CAAC;AAED;;;;;GAKG;AACH,MAAM,CAAC,KAAK,UAAU,eAAe,CAAC,MAAoB;IACxD,MAAM,OAAO,CAAC,OAAO,EAAE,CAAA;IACvB,gBAAgB,CAAC,MAAM,CAAC,CAAA;AAC1B,CAAC"}
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@gmod/bbi",
|
|
3
|
-
"version": "1.0.
|
|
3
|
+
"version": "1.0.35",
|
|
4
4
|
"description": "Parser for BigWig/BigBed files",
|
|
5
5
|
"license": "MIT",
|
|
6
6
|
"repository": "GMOD/bbi-js",
|
|
@@ -16,7 +16,8 @@
|
|
|
16
16
|
},
|
|
17
17
|
"files": [
|
|
18
18
|
"dist",
|
|
19
|
-
"esm"
|
|
19
|
+
"esm",
|
|
20
|
+
"src"
|
|
20
21
|
],
|
|
21
22
|
"scripts": {
|
|
22
23
|
"test": "jest",
|
|
@@ -24,8 +25,8 @@
|
|
|
24
25
|
"lint": "eslint --report-unused-disable-directives --max-warnings 0 --ext .js,.ts src",
|
|
25
26
|
"clean": "rimraf dist esm",
|
|
26
27
|
"prebuild": "npm run clean",
|
|
27
|
-
"build:esm": "tsc --target es2018 --outDir esm",
|
|
28
|
-
"build:es5": "tsc --target es5 --outDir dist",
|
|
28
|
+
"build:esm": "tsc --target es2018 --outDir esm --module es2020",
|
|
29
|
+
"build:es5": "tsc --target es5 --outDir dist --module commonjs",
|
|
29
30
|
"build": "npm run build:esm && npm run build:es5",
|
|
30
31
|
"preversion": "npm run lint && npm test && npm run build",
|
|
31
32
|
"version": "standard-changelog && git add CHANGELOG.md",
|