@gmod/bbi 1.0.33 → 2.0.0

package/esm/blockView.js

@@ -1,31 +1,30 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.BlockView = void 0;
-const binary_parser_1 = require("@gmod/binary-parser");
-const abortable_promise_cache_1 = __importDefault(require("abortable-promise-cache"));
-const unzip_1 = require("./unzip");
-const quick_lru_1 = __importDefault(require("quick-lru"));
-const range_1 = __importDefault(require("./range"));
-const util_1 = require("./util");
+import { Parser } from 'binary-parser';
+import AbortablePromiseCache from 'abortable-promise-cache';
+import QuickLRU from 'quick-lru';
+// locals
+import Range from './range';
+import { unzip } from './unzip';
+import { groupBlocks, checkAbortSignal } from './util';
 const BIG_WIG_TYPE_GRAPH = 1;
 const BIG_WIG_TYPE_VSTEP = 2;
 const BIG_WIG_TYPE_FSTEP = 3;
+function coordFilter(s1, e1, s2, e2) {
+    return s1 < e2 && e1 >= s2;
+}
 function getParsers(isBigEndian) {
     const le = isBigEndian ? 'big' : 'little';
-    const summaryParser = new binary_parser_1.Parser()
+    const summaryParser = new Parser()
         .endianess(le)
         .uint32('chromId')
         .uint32('start')
         .uint32('end')
         .uint32('validCnt')
-        .float('minScore')
-        .float('maxScore')
-        .float('sumData')
-        .float('sumSqData');
-    const leafParser = new binary_parser_1.Parser()
+        .floatle('minScore')
+        .floatle('maxScore')
+        .floatle('sumData')
+        .floatle('sumSqData')
+        .saveOffset('offset');
+    const leafParser = new Parser()
         .endianess(le)
         .uint8('isLeaf')
         .skip(1)
@@ -33,36 +32,41 @@ function getParsers(isBigEndian) {
         .choice({
         tag: 'isLeaf',
         choices: {
-            1: new binary_parser_1.Parser().array('blocksToFetch', {
+            1: new Parser().endianess(le).array('blocksToFetch', {
                 length: 'cnt',
-                type: new binary_parser_1.Parser()
+                type: new Parser()
+                    .endianess(le)
                     .uint32('startChrom')
                     .uint32('startBase')
                     .uint32('endChrom')
                     .uint32('endBase')
                     .uint64('blockOffset')
-                    .uint64('blockSize'),
+                    .uint64('blockSize')
+                    .saveOffset('offset'),
             }),
-            0: new binary_parser_1.Parser().array('recurOffsets', {
+            0: new Parser().array('recurOffsets', {
                 length: 'cnt',
-                type: new binary_parser_1.Parser()
+                type: new Parser()
+                    .endianess(le)
                     .uint32('startChrom')
                     .uint32('startBase')
                     .uint32('endChrom')
                     .uint32('endBase')
-                    .uint64('blockOffset'),
+                    .uint64('blockOffset')
+                    .saveOffset('offset'),
             }),
         },
     });
-    const bigBedParser = new binary_parser_1.Parser()
+    const bigBedParser = new Parser()
         .endianess(le)
         .uint32('chromId')
         .int32('start')
         .int32('end')
         .string('rest', {
         zeroTerminated: true,
-    });
-    const bigWigParser = new binary_parser_1.Parser()
+    })
+        .saveOffset('offset');
+    const bigWigParser = new Parser()
         .endianess(le)
         .skip(4)
         .int32('blockStart')
@@ -75,17 +79,21 @@ function getParsers(isBigEndian) {
         .choice({
         tag: 'blockType',
         choices: {
-            [BIG_WIG_TYPE_FSTEP]: new binary_parser_1.Parser().array('items', {
+            [BIG_WIG_TYPE_FSTEP]: new Parser().array('items', {
                 length: 'itemCount',
-                type: new binary_parser_1.Parser().float('score'),
+                type: new Parser().floatle('score'),
             }),
-            [BIG_WIG_TYPE_VSTEP]: new binary_parser_1.Parser().array('items', {
+            [BIG_WIG_TYPE_VSTEP]: new Parser().array('items', {
                 length: 'itemCount',
-                type: new binary_parser_1.Parser().int32('start').float('score'),
+                type: new Parser().endianess(le).int32('start').floatle('score'),
             }),
-            [BIG_WIG_TYPE_GRAPH]: new binary_parser_1.Parser().array('items', {
+            [BIG_WIG_TYPE_GRAPH]: new Parser().array('items', {
                 length: 'itemCount',
-                type: new binary_parser_1.Parser().int32('start').int32('end').float('score'),
+                type: new Parser()
+                    .endianess(le)
+                    .int32('start')
+                    .int32('end')
+                    .floatle('score'),
             }),
         },
     });
@@ -103,44 +111,43 @@ function getParsers(isBigEndian) {
  * Explorer by Thomas Down.
  * @constructs
  */
-class BlockView {
-    constructor(bbi, refsByName, cirTreeOffset, cirTreeLength, isBigEndian, isCompressed, blockType) {
-        this.featureCache = new abortable_promise_cache_1.default({
-            cache: new quick_lru_1.default({ maxSize: 1000 }),
+export class BlockView {
+    constructor(bbi, refsByName, cirTreeOffset, isBigEndian, isCompressed, blockType) {
+        this.bbi = bbi;
+        this.refsByName = refsByName;
+        this.cirTreeOffset = cirTreeOffset;
+        this.isBigEndian = isBigEndian;
+        this.isCompressed = isCompressed;
+        this.blockType = blockType;
+        this.featureCache = new AbortablePromiseCache({
+            cache: new QuickLRU({ maxSize: 1000 }),
             fill: async (requestData, signal) => {
-                const { length, offset } = requestData;
-                const { buffer } = await this.bbi.read(Buffer.alloc(length), 0, length, offset, { signal });
+                const len = Number(requestData.length);
+                const off = Number(requestData.offset);
+                const { buffer } = await this.bbi.read(Buffer.alloc(len), 0, len, off, {
+                    signal,
+                });
                 return buffer;
             },
         });
         if (!(cirTreeOffset >= 0)) {
             throw new Error('invalid cirTreeOffset!');
         }
-        if (!(cirTreeLength > 0)) {
-            throw new Error('invalid cirTreeLength!');
-        }
-        this.cirTreeOffset = cirTreeOffset;
-        this.cirTreeLength = cirTreeLength;
-        this.isCompressed = isCompressed;
-        this.refsByName = refsByName;
-        this.isBigEndian = isBigEndian;
-        this.bbi = bbi;
-        this.blockType = blockType;
-        Object.assign(this, getParsers(isBigEndian));
+        const parsers = getParsers(isBigEndian);
+        this.leafParser = parsers.leafParser;
+        this.bigBedParser = parsers.bigBedParser;
     }
     async readWigData(chrName, start, end, observer, opts) {
         try {
             const { refsByName, bbi, cirTreeOffset, isBigEndian } = this;
-            const { signal } = opts;
             const chrId = refsByName[chrName];
             if (chrId === undefined) {
                 observer.complete();
             }
             const request = { chrId, start, end };
             if (!this.cirTreePromise) {
-                this.cirTreePromise = bbi.read(Buffer.alloc(48), 0, 48, cirTreeOffset, {
-                    signal,
-                });
+                const off = Number(cirTreeOffset);
+                this.cirTreePromise = bbi.read(Buffer.alloc(48), 0, 48, off, opts);
             }
             const { buffer } = await this.cirTreePromise;
             const cirBlockSize = isBigEndian
@@ -151,9 +158,11 @@ class BlockView {
             const cirFobRecur2 = (cirBlockData, offset, level) => {
                 try {
                     const data = cirBlockData.subarray(offset);
-                    const p = this.leafParser.parse(data).result;
+                    const p = this.leafParser.parse(data);
                     if (p.blocksToFetch) {
-                        blocksToFetch = blocksToFetch.concat(p.blocksToFetch.filter(filterFeats).map((l) => ({
+                        blocksToFetch = blocksToFetch.concat(p.blocksToFetch
+                            .filter(filterFeats)
+                            .map((l) => ({
                             offset: l.blockOffset,
                             length: l.blockSize,
                         })));
@@ -161,7 +170,7 @@ class BlockView {
                     if (p.recurOffsets) {
                         const recurOffsets = p.recurOffsets
                             .filter(filterFeats)
-                            .map((l) => l.blockOffset);
+                            .map((l) => Number(l.blockOffset));
                         if (recurOffsets.length > 0) {
                             cirFobRecur(recurOffsets, level + 1);
                         }
@@ -180,7 +189,7 @@ class BlockView {
                 try {
                     const length = fr.max() - fr.min();
                     const offset = fr.min();
-                    const resultBuffer = await this.featureCache.get(`${length}_${offset}`, { length, offset }, signal);
+                    const resultBuffer = await this.featureCache.get(`${length}_${offset}`, { length, offset }, opts.signal);
                     for (let i = 0; i < off.length; i += 1) {
                         if (fr.contains(off[i])) {
                             cirFobRecur2(resultBuffer, off[i] - offset, level);
@@ -198,10 +207,10 @@ class BlockView {
             const cirFobRecur = (offset, level) => {
                 try {
                     outstanding += offset.length;
-                    const maxCirBlockSpan = 4 + cirBlockSize * 32; // Upper bound on size, based on a completely full leaf node.
-                    let spans = new range_1.default(offset[0], offset[0] + maxCirBlockSpan);
+                    const maxCirBlockSpan = 4 + Number(cirBlockSize) * 32; // Upper bound on size, based on a completely full leaf node.
+                    let spans = new Range(offset[0], offset[0] + maxCirBlockSpan);
                     for (let i = 1; i < offset.length; i += 1) {
-                        const blockSpan = new range_1.default(offset[i], offset[i] + maxCirBlockSpan);
+                        const blockSpan = new Range(offset[i], offset[i] + maxCirBlockSpan);
                         spans = spans.union(blockSpan);
                     }
                     spans.getRanges().map(fr => cirFobStartFetch(offset, fr, level));
@@ -210,90 +219,133 @@ class BlockView {
                     observer.error(e);
                 }
             };
-            return cirFobRecur([cirTreeOffset + 48], 1);
+            return cirFobRecur([Number(cirTreeOffset) + 48], 1);
         }
         catch (e) {
             observer.error(e);
         }
     }
-    parseSummaryBlock(data, startOffset, request) {
+    parseSummaryBlock(buffer, startOffset, request) {
         const features = [];
-        let currOffset = startOffset;
-        while (currOffset < data.byteLength) {
-            const res = this.summaryParser.parse(data.subarray(currOffset));
-            features.push(res.result);
-            currOffset += res.offset;
-        }
-        let items = features;
-        if (request) {
-            items = items.filter(elt => elt.chromId === request.chrId);
+        let offset = startOffset;
+        const dataView = new DataView(buffer.buffer, buffer.byteOffset, buffer.length);
+        while (offset < buffer.byteLength) {
+            // this was extracted from looking at the runtime code generated by
+            // binary-parser
+            const chromId = dataView.getUint32(offset, true);
+            offset += 4;
+            const start = dataView.getUint32(offset, true);
+            offset += 4;
+            const end = dataView.getUint32(offset, true);
+            offset += 4;
+            const validCnt = dataView.getUint32(offset, true);
+            offset += 4;
+            const minScore = dataView.getFloat32(offset, true);
+            offset += 4;
+            const maxScore = dataView.getFloat32(offset, true);
+            offset += 4;
+            const sumData = dataView.getFloat32(offset, true);
+            offset += 4;
+            // unused
+            // const sumSqData = dataView.getFloat32(offset, true)
+            offset += 4;
+            if (request
+                ? chromId === request.chrId &&
+                    coordFilter(start, end, request.start, request.end)
+                : true) {
+                features.push({
+                    start,
+                    end,
+                    maxScore,
+                    minScore,
+                    summary: true,
+                    score: sumData / (validCnt || 1),
+                });
+            }
         }
-        const feats = items.map((elt) => ({
-            start: elt.start,
-            end: elt.end,
-            maxScore: elt.maxScore,
-            minScore: elt.minScore,
-            score: elt.sumData / (elt.validCnt || 1),
-            summary: true,
-        }));
-        return request
-            ? feats.filter(f => BlockView.coordFilter(f, request))
-            : feats;
+        return features;
     }
     parseBigBedBlock(data, startOffset, offset, request) {
         const items = [];
         let currOffset = startOffset;
         while (currOffset < data.byteLength) {
             const res = this.bigBedParser.parse(data.subarray(currOffset));
-            res.result.uniqueId = `bb-${offset + currOffset}`;
-            items.push(res.result);
+            items.push({ ...res, uniqueId: `bb-${offset + currOffset}` });
             currOffset += res.offset;
         }
         return request
-            ? items.filter((f) => BlockView.coordFilter(f, request))
+            ? items.filter((f) => coordFilter(f.start, f.end, request.start, request.end))
             : items;
     }
-    parseBigWigBlock(bytes, startOffset, request) {
-        const data = bytes.subarray(startOffset);
-        const results = this.bigWigParser.parse(data).result;
-        const { items, itemSpan, itemStep, blockStart, blockType } = results;
-        if (blockType === BIG_WIG_TYPE_FSTEP) {
-            for (let i = 0; i < items.length; i++) {
-                items[i].start = blockStart + i * itemStep;
-                items[i].end = blockStart + i * itemStep + itemSpan;
-            }
-        }
-        else if (blockType === BIG_WIG_TYPE_VSTEP) {
-            for (let i = 0; i < items.length; i++) {
-                items[i].end = items[i].start + itemSpan;
-            }
+    parseBigWigBlock(buffer, startOffset, request) {
+        const b = buffer.subarray(startOffset);
+        const dataView = new DataView(b.buffer, b.byteOffset, b.length);
+        let offset = 0;
+        offset += 4;
+        const blockStart = dataView.getInt32(offset, true);
+        offset += 8;
+        const itemStep = dataView.getUint32(offset, true);
+        offset += 4;
+        const itemSpan = dataView.getUint32(offset, true);
+        offset += 4;
+        const blockType = dataView.getUint8(offset);
+        offset += 2;
+        const itemCount = dataView.getUint16(offset, true);
+        offset += 2;
+        const items = new Array(itemCount);
+        switch (blockType) {
+            case 1:
+                for (let i = 0; i < itemCount; i++) {
+                    const start = dataView.getInt32(offset, true);
+                    offset += 4;
+                    const end = dataView.getInt32(offset, true);
+                    offset += 4;
+                    const score = dataView.getFloat32(offset, true);
+                    offset += 4;
+                    items[i] = { start, end, score };
+                }
+                break;
+            case 2:
+                for (let i = 0; i < itemCount; i++) {
+                    const start = dataView.getInt32(offset, true);
+                    offset += 4;
+                    const score = dataView.getFloat32(offset, true);
+                    offset += 4;
+                    items[i] = { score, start, end: start + itemSpan };
+                }
+                break;
+            case 3:
+                for (let i = 0; i < itemCount; i++) {
+                    const score = dataView.getFloat32(offset, true);
+                    offset += 4;
+                    const start = blockStart + i * itemStep;
+                    items[i] = { score, start, end: start + itemSpan };
+                }
+                break;
         }
         return request
-            ? items.filter((f) => BlockView.coordFilter(f, request))
+            ? items.filter((f) => coordFilter(f.start, f.end, request.start, request.end))
             : items;
     }
-    static coordFilter(f, range) {
-        return f.start < range.end && f.end >= range.start;
-    }
     async readFeatures(observer, blocks, opts = {}) {
         try {
             const { blockType, isCompressed } = this;
             const { signal, request } = opts;
-            const blockGroupsToFetch = (0, util_1.groupBlocks)(blocks);
-            (0, util_1.checkAbortSignal)(signal);
+            const blockGroupsToFetch = groupBlocks(blocks);
+            checkAbortSignal(signal);
             await Promise.all(blockGroupsToFetch.map(async (blockGroup) => {
-                (0, util_1.checkAbortSignal)(signal);
+                checkAbortSignal(signal);
                 const { length, offset } = blockGroup;
                 const data = await this.featureCache.get(`${length}_${offset}`, blockGroup, signal);
-                blockGroup.blocks.forEach((block) => {
-                    (0, util_1.checkAbortSignal)(signal);
-                    let blockOffset = block.offset - blockGroup.offset;
+                blockGroup.blocks.forEach(block => {
+                    checkAbortSignal(signal);
+                    let blockOffset = Number(block.offset) - Number(blockGroup.offset);
                     let resultData = data;
                     if (isCompressed) {
-                        resultData = (0, unzip_1.unzip)(data.subarray(blockOffset));
+                        resultData = unzip(data.subarray(blockOffset));
                         blockOffset = 0;
                     }
-                    (0, util_1.checkAbortSignal)(signal);
+                    checkAbortSignal(signal);
                     switch (blockType) {
                         case 'summary':
                             observer.next(this.parseSummaryBlock(resultData, blockOffset, request));
@@ -302,9 +354,7 @@ class BlockView {
                             observer.next(this.parseBigWigBlock(resultData, blockOffset, request));
                             break;
                         case 'bigbed':
-                            observer.next(this.parseBigBedBlock(resultData, blockOffset, 
-                            // eslint-disable-next-line no-bitwise
-                            block.offset * (1 << 8), request));
+                            observer.next(this.parseBigBedBlock(resultData, blockOffset, Number(block.offset) * (1 << 8), request));
                             break;
                         default:
                             console.warn(`Don't know what to do with ${blockType}`);
@@ -318,4 +368,4 @@ class BlockView {
         }
     }
 }
-exports.BlockView = BlockView;
+//# sourceMappingURL=blockView.js.map

package/esm/blockView.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"blockView.js","sourceRoot":"","sources":["../src/blockView.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,MAAM,EAAE,MAAM,eAAe,CAAA;AACtC,OAAO,qBAAqB,MAAM,yBAAyB,CAAA;AAE3D,OAAO,QAAQ,MAAM,WAAW,CAAA;AAEhC,SAAS;AACT,OAAO,KAAK,MAAM,SAAS,CAAA;AAC3B,OAAO,EAAE,KAAK,EAAE,MAAM,SAAS,CAAA;AAE/B,OAAO,EAAE,WAAW,EAAE,gBAAgB,EAAE,MAAM,QAAQ,CAAA;AA4BtD,MAAM,kBAAkB,GAAG,CAAC,CAAA;AAC5B,MAAM,kBAAkB,GAAG,CAAC,CAAA;AAC5B,MAAM,kBAAkB,GAAG,CAAC,CAAA;AAE5B,SAAS,WAAW,CAAC,EAAU,EAAE,EAAU,EAAE,EAAU,EAAE,EAAU;IACjE,OAAO,EAAE,GAAG,EAAE,IAAI,EAAE,IAAI,EAAE,CAAA;AAC5B,CAAC;AAED,SAAS,UAAU,CAAC,WAAoB;IACtC,MAAM,EAAE,GAAG,WAAW,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,QAAQ,CAAA;IACzC,MAAM,aAAa,GAAG,IAAI,MAAM,EAAE;SAC/B,SAAS,CAAC,EAAE,CAAC;SACb,MAAM,CAAC,SAAS,CAAC;SACjB,MAAM,CAAC,OAAO,CAAC;SACf,MAAM,CAAC,KAAK,CAAC;SACb,MAAM,CAAC,UAAU,CAAC;SAClB,OAAO,CAAC,UAAU,CAAC;SACnB,OAAO,CAAC,UAAU,CAAC;SACnB,OAAO,CAAC,SAAS,CAAC;SAClB,OAAO,CAAC,WAAW,CAAC;SACpB,UAAU,CAAC,QAAQ,CAAC,CAAA;IAEvB,MAAM,UAAU,GAAG,IAAI,MAAM,EAAE;SAC5B,SAAS,CAAC,EAAE,CAAC;SACb,KAAK,CAAC,QAAQ,CAAC;SACf,IAAI,CAAC,CAAC,CAAC;SACP,MAAM,CAAC,KAAK,CAAC;SACb,MAAM,CAAC;QACN,GAAG,EAAE,QAAQ;QACb,OAAO,EAAE;YACP,CAAC,EAAE,IAAI,MAAM,EAAE,CAAC,SAAS,CAAC,EAAE,CAAC,CAAC,KAAK,CAAC,eAAe,EAAE;gBACnD,MAAM,EAAE,KAAK;gBACb,IAAI,EAAE,IAAI,MAAM,EAAE;qBACf,SAAS,CAAC,EAAE,CAAC;qBACb,MAAM,CAAC,YAAY,CAAC;qBACpB,MAAM,CAAC,WAAW,CAAC;qBACnB,MAAM,CAAC,UAAU,CAAC;qBAClB,MAAM,CAAC,SAAS,CAAC;qBACjB,MAAM,CAAC,aAAa,CAAC;qBACrB,MAAM,CAAC,WAAW,CAAC;qBACnB,UAAU,CAAC,QAAQ,CAAC;aACxB,CAAC;YACF,CAAC,EAAE,IAAI,MAAM,EAAE,CAAC,KAAK,CAAC,cAAc,EAAE;gBACpC,MAAM,EAAE,KAAK;gBACb,IAAI,EAAE,IAAI,MAAM,EAAE;qBACf,SAAS,CAAC,EAAE,CAAC;qBACb,MAAM,CAAC,YAAY,CAAC;qBACpB,MAAM,CAAC,WAAW,CAAC;qBACnB,MAAM,CAAC,UAAU,CAAC;qBAClB,MAAM,CAAC,SAAS,CAAC;qBACjB,MAAM,CAAC,aAAa,CAAC;qBACrB,UAAU,CAAC,QAAQ,CAAC;aACxB,CAAC;SACH;KACF,CAAC,CAAA;IACJ,MAAM,YAAY,GAAG,IAAI,MAAM,EAAE;SAC9B,SAAS,CAAC,EAAE,CAAC;SACb,MAAM,CAAC,SAAS,CAAC;SACjB,KAAK,CAAC,OAAO,CAAC;SACd,KAAK,CAAC,KAAK,CAAC;SACZ,MAAM,CAAC,MAAM,EAAE;QACd,cAAc,EAAE,IAAI;KACrB,CAAC;SACD,UAAU,CAAC,QAAQ,CAAC,CAAA;IAEvB,MAAM,YAAY,GAAG,IAAI,MAAM,EAAE;SAC9B,SAAS,CAAC,EAAE,CAAC;SACb,IAAI,CAAC,CAAC,CAAC;SACP,KAAK,CAAC,YAAY,CAAC;SACnB,IAAI,CAAC,CAAC,CAAC;SACP,MAAM,CAAC,UAAU,CAAC;SAClB,MAAM,CAAC,UAAU,CAAC;SAClB,KAAK,CAAC,WAAW,CAAC;SAClB,IAAI,CAAC,CAAC,CAAC;SACP,MAAM,CAAC,WAAW,CAAC;SACnB,MAAM,CAAC;QACN,GAAG,EAAE,WAAW;QAChB,OAAO,EAAE;YACP,CAAC,kBAAkB,CAAC,EAAE,IAAI,MAAM,EAAE,CAAC,KAAK,CAAC,OAAO,EAAE;gBAChD,MAAM,EAAE,WAAW;gBACnB,IAAI,EAAE,IAAI,MAAM,EAAE,CAAC,OAAO,CAAC,OAAO,CAAC;aACpC,CAAC;YACF,CAAC,kBAAkB,CAAC,EAAE,IAAI,MAAM,EAAE,CAAC,KAAK,CAAC,OAAO,EAAE;gBAChD,MAAM,EAAE,WAAW;gBACnB,IAAI,EAAE,IAAI,MAAM,EAAE,CAAC,SAAS,CAAC,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,OAAO,CAAC,OAAO,CAAC;aACjE,CAAC;YACF,CAAC,kBAAkB,CAAC,EAAE,IAAI,MAAM,EAAE,CAAC,KAAK,CAAC,OAAO,EAAE;gBAChD,MAAM,EAAE,WAAW;gBACnB,IAAI,EAAE,IAAI,MAAM,EAAE;qBACf,SAAS,CAAC,EAAE,CAAC;qBACb,KAAK,CAAC,OAAO,CAAC;qBACd,KAAK,CAAC,KAAK,CAAC;qBACZ,OAAO,CAAC,OAAO,CAAC;aACpB,CAAC;SACH;KACF,CAAC,CAAA;IACJ,OAAO;QACL,YAAY;QACZ,YAAY;QACZ,aAAa;QACb,UAAU;KACX,CAAA;AACH,CAAC;AAED;;;;;;GAMG;AAEH,MAAM,OAAO,SAAS;IAoBpB,YACU,GAAsB,EACtB,UAAe,EACf,aAAqB,EACrB,WAAoB,EACpB,YAAqB,EACrB,SAAiB;QALjB,QAAG,GAAH,GAAG,CAAmB;QACtB,eAAU,GAAV,UAAU,CAAK;QACf,kBAAa,GAAb,aAAa,CAAQ;QACrB,gBAAW,GAAX,WAAW,CAAS;QACpB,iBAAY,GAAZ,YAAY,CAAS;QACrB,cAAS,GAAT,SAAS,CAAQ;QAvBnB,iBAAY,GAAG,IAAI,qBAAqB,CAAC;YAC/C,KAAK,EAAE,IAAI,QAAQ,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC;YAEtC,IAAI,EAAE,KAAK,EAAE,WAAqB,EAAE,MAAmB,EAAE,EAAE;gBACzD,MAAM,GAAG,GAAG,MAAM,CAAC,WAAW,CAAC,MAAM,CAAC,CAAA;gBACtC,MAAM,GAAG,GAAG,MAAM,CAAC,WAAW,CAAC,MAAM,CAAC,CAAA;gBACtC,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,GAAG,EAAE,GAAG,EAAE;oBACrE,MAAM;iBACP,CAAC,CAAA;gBACF,OAAO,MAAM,CAAA;YACf,CAAC;SACF,CAAC,CAAA;QAcA,IAAI,CAAC,CAAC,aAAa,IAAI,CAAC,CAAC,EAAE;YACzB,MAAM,IAAI,KAAK,CAAC,wBAAwB,CAAC,CAAA;SAC1C;QAED,MAAM,OAAO,GAAG,UAAU,CAAC,WAAW,CAAC,CAAA;QACvC,IAAI,CAAC,UAAU,GAAG,OAAO,CAAC,UAAU,CAAA;QACpC,IAAI,CAAC,YAAY,GAAG,OAAO,CAAC,YAAY,CAAA;IAC1C,CAAC;IAEM,KAAK,CAAC,WAAW,CACtB,OAAe,EACf,KAAa,EACb,GAAW,EACX,QAA6B,EAC7B,IAAa;QAEb,IAAI;YACF,MAAM,EAAE,UAAU,EAAE,GAAG,EAAE,aAAa,EAAE,WAAW,EAAE,GAAG,IAAI,CAAA;YAC5D,MAAM,KAAK,GAAG,UAAU,CAAC,OAAO,CAAC,CAAA;YACjC,IAAI,KAAK,KAAK,SAAS,EAAE;gBACvB,QAAQ,CAAC,QAAQ,EAAE,CAAA;aACpB;YACD,MAAM,OAAO,GAAG,EAAE,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,CAAA;YACrC,IAAI,CAAC,IAAI,CAAC,cAAc,EAAE;gBACxB,MAAM,GAAG,GAAG,MAAM,CAAC,aAAa,CAAC,CAAA;gBACjC,IAAI,CAAC,cAAc,GAAG,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,EAAE,EAAE,GAAG,EAAE,IAAI,CAAC,CAAA;aACnE;YACD,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,cAAc,CAAA;YAC5C,MAAM,YAAY,GAAG,WAAW;gBAC9B,CAAC,CAAC,MAAM,CAAC,YAAY,CAAC,CAAC,CAAC;gBACxB,CAAC,CAAC,MAAM,CAAC,YAAY,CAAC,CAAC,CAAC,CAAA;YAC1B,IAAI,aAAa,GAAU,EAAE,CAAA;YAC7B,IAAI,WAAW,GAAG,CAAC,CAAA;YAEnB,MAAM,YAAY,GAAG,CACnB,YAAoB,EACpB,MAAc,EACd,KAAa,EACb,EAAE;gBACF,IAAI;oBACF,MAAM,IAAI,GAAG,YAAY,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;oBAE1C,MAAM,CAAC,GAAG,IAAI,CAAC,UAAU,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;oBACrC,IAAI,CAAC,CAAC,aAAa,EAAE;wBACnB,aAAa,GAAG,aAAa,CAAC,MAAM,CAClC,CAAC,CAAC,aAAa;6BACZ,MAAM,CAAC,WAAW,CAAC;6BACnB,GAAG,CAAC,CAAC,CAA6C,EAAE,EAAE,CAAC,CAAC;4BACvD,MAAM,EAAE,CAAC,CAAC,WAAW;4BACrB,MAAM,EAAE,CAAC,CAAC,SAAS;yBACpB,CAAC,CAAC,CACN,CAAA;qBACF;oBACD,IAAI,CAAC,CAAC,YAAY,EAAE;wBAClB,MAAM,YAAY,GAAG,CAAC,CAAC,YAAY;6BAChC,MAAM,CAAC,WAAW,CAAC;6BACnB,GAAG,CAAC,CAAC,CAA0B,EAAE,EAAE,CAAC,MAAM,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAA;wBAC7D,IAAI,YAAY,CAAC,MAAM,GAAG,CAAC,EAAE;4BAC3B,WAAW,CAAC,YAAY,EAAE,KAAK,GAAG,CAAC,CAAC,CAAA;yBACrC;qBACF;iBACF;gBAAC,OAAO,CAAC,EAAE;oBACV,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;iBAClB;YACH,CAAC,CAAA;YAED,MAAM,WAAW,GAAG,CAAC,CAAY,EAAE,EAAE;gBACnC,MAAM,EAAE,UAAU,EAAE,SAAS,EAAE,QAAQ,EAAE,OAAO,EAAE,GAAG,CAAC,CAAA;gBACtD,OAAO,CACL,CAAC,UAAU,GAAG,KAAK,IAAI,CAAC,UAAU,KAAK,KAAK,IAAI,SAAS,IAAI,GAAG,CAAC,CAAC;oBAClE,CAAC,QAAQ,GAAG,KAAK,IAAI,CAAC,QAAQ,KAAK,KAAK,IAAI,OAAO,IAAI,KAAK,CAAC,CAAC,CAC/D,CAAA;YACH,CAAC,CAAA;YAED,MAAM,gBAAgB,GAAG,KAAK,EAC5B,GAAa,EACb,EAAS,EACT,KAAa,EACb,EAAE;gBACF,IAAI;oBACF,MAAM,MAAM,GAAG,EAAE,CAAC,GAAG,EAAE,GAAG,EAAE,CAAC,GAAG,EAAE,CAAA;oBAClC,MAAM,MAAM,GAAG,EAAE,CAAC,GAAG,EAAE,CAAA;oBACvB,MAAM,YAAY,GAAW,MAAM,IAAI,CAAC,YAAY,CAAC,GAAG,CACtD,GAAG,MAAM,IAAI,MAAM,EAAE,EACrB,EAAE,MAAM,EAAE,MAAM,EAAE,EAClB,IAAI,CAAC,MAAM,CACZ,CAAA;oBACD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE;wBACtC,IAAI,EAAE,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE;4BACvB,YAAY,CAAC,YAAY,EAAE,GAAG,CAAC,CAAC,CAAC,GAAG,MAAM,EAAE,KAAK,CAAC,CAAA;4BAClD,WAAW,IAAI,CAAC,CAAA;4BAChB,IAAI,WAAW,KAAK,CAAC,EAAE;gCACrB,IAAI,CAAC,YAAY,CAAC,QAAQ,EAAE,aAAa,EAAE,EAAE,GAAG,IAAI,EAAE,OAAO,EAAE,CAAC,CAAA;6BACjE;yBACF;qBACF;iBACF;gBAAC,OAAO,CAAC,EAAE;oBACV,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;iBAClB;YACH,CAAC,CAAA;YACD,MAAM,WAAW,GAAG,CAAC,MAAgB,EAAE,KAAa,EAAE,EAAE;gBACtD,IAAI;oBACF,WAAW,IAAI,MAAM,CAAC,MAAM,CAAA;oBAE5B,MAAM,eAAe,GAAG,CAAC,GAAG,MAAM,CAAC,YAAY,CAAC,GAAG,EAAE,CAAA,CAAC,6DAA6D;oBACnH,IAAI,KAAK,GAAG,IAAI,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,GAAG,eAAe,CAAC,CAAA;oBAC7D,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE;wBACzC,MAAM,SAAS,GAAG,IAAI,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,GAAG,eAAe,CAAC,CAAA;wBACnE,KAAK,GAAG,KAAK,CAAC,KAAK,CAAC,SAAS,CAAC,CAAA;qBAC/B;oBACD,KAAK,CAAC,SAAS,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,CAAC,gBAAgB,CAAC,MAAM,EAAE,EAAE,EAAE,KAAK,CAAC,CAAC,CAAA;iBACjE;gBAAC,OAAO,CAAC,EAAE;oBACV,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;iBAClB;YACH,CAAC,CAAA;YAED,OAAO,WAAW,CAAC,CAAC,MAAM,CAAC,aAAa,CAAC,GAAG,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;SACpD;QAAC,OAAO,CAAC,EAAE;YACV,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;SAClB;IACH,CAAC;IAEO,iBAAiB,CACvB,MAAc,EACd,WAAmB,EACnB,OAAsB;QAEtB,MAAM,QAAQ,GAAG,EAAW,CAAA;QAC5B,IAAI,MAAM,GAAG,WAAW,CAAA;QAExB,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAC3B,MAAM,CAAC,MAAM,EACb,MAAM,CAAC,UAAU,EACjB,MAAM,CAAC,MAAM,CACd,CAAA;QACD,OAAO,MAAM,GAAG,MAAM,CAAC,UAAU,EAAE;YACjC,mEAAmE;YACnE,gBAAgB;YAChB,MAAM,OAAO,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAChD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,KAAK,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC9C,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,GAAG,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC5C,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,QAAQ,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YACjD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,QAAQ,GAAG,QAAQ,CAAC,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAClD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,QAAQ,GAAG,QAAQ,CAAC,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAClD,MAAM,IAAI,CAAC,CAAA;YACX,MAAM,OAAO,GAAG,QAAQ,CAAC,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YACjD,MAAM,IAAI,CAAC,CAAA;YACX,SAAS;YACT,sDAAsD;YACtD,MAAM,IAAI,CAAC,CAAA;YAEX,IACE,OAAO;gBACL,CAAC,CAAC,OAAO,KAAK,OAAO,CAAC,KAAK;oBACzB,WAAW,CAAC,KAAK,EAAE,GAAG,EAAE,OAAO,CAAC,KAAK,EAAE,OAAO,CAAC,GAAG,CAAC;gBACrD,CAAC,CAAC,IAAI,EACR;gBACA,QAAQ,CAAC,IAAI,CAAC;oBACZ,KAAK;oBACL,GAAG;oBACH,QAAQ;oBACR,QAAQ;oBACR,OAAO,EAAE,IAAI;oBACb,KAAK,EAAE,OAAO,GAAG,CAAC,QAAQ,IAAI,CAAC,CAAC;iBACjC,CAAC,CAAA;aACH;SACF;QAED,OAAO,QAAQ,CAAA;IACjB,CAAC;IAEO,gBAAgB,CACtB,IAAY,EACZ,WAAmB,EACnB,MAAc,EACd,OAAsB;QAEtB,MAAM,KAAK,GAAG,EAAe,CAAA;QAC7B,IAAI,UAAU,GAAG,WAAW,CAAA;QAC5B,OAAO,UAAU,GAAG,IAAI,CAAC,UAAU,EAAE;YACnC,MAAM,GAAG,GAAG,IAAI,CAAC,YAAY,CAAC,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,CAAC,CAAA;YAC9D,KAAK,CAAC,IAAI,CAAC,EAAE,GAAG,GAAG,EAAE,QAAQ,EAAE,MAAM,MAAM,GAAG,UAAU,EAAE,EAAE,CAAC,CAAA;YAC7D,UAAU,IAAI,GAAG,CAAC,MAAM,CAAA;SACzB;QAED,OAAO,OAAO;YACZ,CAAC,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAM,EAAE,EAAE,CACtB,WAAW,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,GAAG,EAAE,OAAO,CAAC,KAAK,EAAE,OAAO,CAAC,GAAG,CAAC,CACxD;YACH,CAAC,CAAC,KAAK,CAAA;IACX,CAAC;IAEO,gBAAgB,CACtB,MAAc,EACd,WAAmB,EACnB,OAAsB;QAEtB,MAAM,CAAC,GAAG,MAAM,CAAC,QAAQ,CAAC,WAAW,CAAC,CAAA;QAEtC,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC,MAAM,CAAC,CAAA;QAC/D,IAAI,MAAM,GAAG,CAAC,CAAA;QACd,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,UAAU,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QAClD,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,QAAQ,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QACjD,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,QAAQ,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QACjD,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,SAAS,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;QAC3C,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,SAAS,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QAClD,MAAM,IAAI,CAAC,CAAA;QACX,MAAM,KAAK,GAAG,IAAI,KAAK,CAAC,SAAS,CAAC,CAAA;QAClC,QAAQ,SAAS,EAAE;YACjB,KAAK,CAAC;gBACJ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,EAAE,CAAC,EAAE,EAAE;oBAClC,MAAM,KAAK,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;oBAC7C,MAAM,IAAI,CAAC,CAAA;oBACX,MAAM,GAAG,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;oBAC3C,MAAM,IAAI,CAAC,CAAA;oBACX,MAAM,KAAK,GAAG,QAAQ,CAAC,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;oBAC/C,MAAM,IAAI,CAAC,CAAA;oBACX,KAAK,CAAC,CAAC,CAAC,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,KAAK,EAAE,CAAA;iBACjC;gBACD,MAAK;YACP,KAAK,CAAC;gBACJ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,EAAE,CAAC,EAAE,EAAE;oBAClC,MAAM,KAAK,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;oBAC7C,MAAM,IAAI,CAAC,CAAA;oBACX,MAAM,KAAK,GAAG,QAAQ,CAAC,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;oBAC/C,MAAM,IAAI,CAAC,CAAA;oBACX,KAAK,CAAC,CAAC,CAAC,GAAG,EAAE,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,KAAK,GAAG,QAAQ,EAAE,CAAA;iBACnD;gBACD,MAAK;YACP,KAAK,CAAC;gBACJ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,EAAE,CAAC,EAAE,EAAE;oBAClC,MAAM,KAAK,GAAG,QAAQ,CAAC,UAAU,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;oBAC/C,MAAM,IAAI,CAAC,CAAA;oBACX,MAAM,KAAK,GAAG,UAAU,GAAG,CAAC,GAAG,QAAQ,CAAA;oBACvC,KAAK,CAAC,CAAC,CAAC,GAAG,EAAE,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,KAAK,GAAG,QAAQ,EAAE,CAAA;iBACnD;gBACD,MAAK;SACR;QAED,OAAO,OAAO;YACZ,CAAC,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAM,EAAE,EAAE,CACtB,WAAW,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,GAAG,EAAE,OAAO,CAAC,KAAK,EAAE,OAAO,CAAC,GAAG,CAAC,CACxD;YACH,CAAC,CAAC,KAAK,CAAA;IACX,CAAC;IAEM,KAAK,CAAC,YAAY,CACvB,QAA6B,EAC7B,MAA4C,EAC5C,OAAgB,EAAE;QAElB,IAAI;YACF,MAAM,EAAE,SAAS,EAAE,YAAY,EAAE,GAAG,IAAI,CAAA;YACxC,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,GAAG,IAAI,CAAA;YAChC,MAAM,kBAAkB,GAAG,WAAW,CAAC,MAAM,CAAC,CAAA;YAC9C,gBAAgB,CAAC,MAAM,CAAC,CAAA;YACxB,MAAM,OAAO,CAAC,GAAG,CACf,kBAAkB,CAAC,GAAG,CAAC,KAAK,EAAC,UAAU,EAAC,EAAE;gBACxC,gBAAgB,CAAC,MAAM,CAAC,CAAA;gBACxB,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,GAAG,UAAU,CAAA;gBACrC,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,YAAY,CAAC,GAAG,CACtC,GAAG,MAAM,IAAI,MAAM,EAAE,EACrB,UAAU,EACV,MAAM,CACP,CAAA;gBACD,UAAU,CAAC,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE;oBAChC,gBAAgB,CAAC,MAAM,CAAC,CAAA;oBACxB,IAAI,WAAW,GAAG,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,UAAU,CAAC,MAAM,CAAC,CAAA;oBAClE,IAAI,UAAU,GAAG,IAAI,CAAA;oBACrB,IAAI,YAAY,EAAE;wBAChB,UAAU,GAAG,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,WAAW,CAAC,CAAC,CAAA;wBAC9C,WAAW,GAAG,CAAC,CAAA;qBAChB;oBACD,gBAAgB,CAAC,MAAM,CAAC,CAAA;oBAExB,QAAQ,SAAS,EAAE;wBACjB,KAAK,SAAS;4BACZ,QAAQ,CAAC,IAAI,CACX,IAAI,CAAC,iBAAiB,CAAC,UAAU,EAAE,WAAW,EAAE,OAAO,CAAC,CACzD,CAAA;4BACD,MAAK;wBACP,KAAK,QAAQ;4BACX,QAAQ,CAAC,IAAI,CACX,IAAI,CAAC,gBAAgB,CAAC,UAAU,EAAE,WAAW,EAAE,OAAO,CAAC,CACxD,CAAA;4BACD,MAAK;wBACP,KAAK,QAAQ;4BACX,QAAQ,CAAC,IAAI,CACX,IAAI,CAAC,gBAAgB,CACnB,UAAU,EACV,WAAW,EACX,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,CAAC,EAC/B,OAAO,CACR,CACF,CAAA;4BACD,MAAK;wBACP;4BACE,OAAO,CAAC,IAAI,CAAC,8BAA8B,SAAS,EAAE,CAAC,CAAA;qBAC1D;gBACH,CAAC,CAAC,CAAA;YACJ,CAAC,CAAC,CACH,CAAA;YACD,QAAQ,CAAC,QAAQ,EAAE,CAAA;SACpB;QAAC,OAAO,CAAC,EAAE;YACV,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;SAClB;IACH,CAAC;CACF"}

package/esm/index.js

@@ -1,7 +1,3 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.BigBed = exports.BigWig = void 0;
-var bigwig_1 = require("./bigwig");
-Object.defineProperty(exports, "BigWig", { enumerable: true, get: function () { return bigwig_1.BigWig; } });
-var bigbed_1 = require("./bigbed");
-Object.defineProperty(exports, "BigBed", { enumerable: true, get: function () { return bigbed_1.BigBed; } });
+export { BigWig } from './bigwig';
+export { BigBed } from './bigbed';
+//# sourceMappingURL=index.js.map

package/esm/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,UAAU,CAAA;AACjC,OAAO,EAAE,MAAM,EAAE,MAAM,UAAU,CAAA"}

package/esm/range.js

@@ -1,11 +1,9 @@
-"use strict";
 /* eslint prefer-rest-params:0, no-nested-ternary:0 */
-Object.defineProperty(exports, "__esModule", { value: true });
 /**
  * Adapted from a combination of Range and _Compound in the
  * Dalliance Genome Explorer, (c) Thomas Down 2006-2010.
  */
-class Range {
+export default class Range {
     constructor(arg1, arg2) {
         this.ranges =
             arguments.length === 2
@@ -106,6 +104,7 @@ class Range {
         let b = tmpb;
         if (arguments.length < 2) {
             b = a;
+            // eslint-disable-next-line @typescript-eslint/no-this-alias
             a = this;
         }
         if (a.min() < b.min()) {
@@ -123,4 +122,4 @@ class Range {
         return 0;
     }
 }
-exports.default = Range;
+//# sourceMappingURL=range.js.map

package/esm/range.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"range.js","sourceRoot":"","sources":["../src/range.ts"],"names":[],"mappings":"AAAA,sDAAsD;AAEtD;;;GAGG;AACH,MAAM,CAAC,OAAO,OAAO,KAAK;IAGxB,YAAmB,IAAS,EAAE,IAAU;QACtC,IAAI,CAAC,MAAM;YACT,SAAS,CAAC,MAAM,KAAK,CAAC;gBACpB,CAAC,CAAC,CAAC,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,EAAE,IAAI,EAAE,CAAC;gBAC5B,CAAC,CAAC,CAAC,IAAI,IAAI;oBACX,CAAC,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,EAAE,IAAI,CAAC;oBACzB,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;IACd,CAAC;IAEM,GAAG;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,GAAG,CAAA;IAC3B,CAAC;IAEM,GAAG;QACR,OAAO,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,GAAG,CAAA;IAChD,CAAC;IAEM,QAAQ,CAAC,GAAW;QACzB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE;YAC9C,MAAM,CAAC,GAAG,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CAAA;YACxB,IAAI,CAAC,CAAC,GAAG,IAAI,GAAG,IAAI,CAAC,CAAC,GAAG,IAAI,GAAG,EAAE;gBAChC,OAAO,IAAI,CAAA;aACZ;SACF;QACD,OAAO,KAAK,CAAA;IACd,CAAC;IAEM,YAAY;QACjB,OAAO,IAAI,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC,CAAA;IAC/B,CAAC;IAEM,SAAS;QACd,OAAO,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAQ,EAAE,EAAE,CAAC,IAAI,KAAK,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAA;IAC/D,CAAC;IAEM,QAAQ;QACb,OAAO,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAQ,EAAE,EAAE,CAAC,IAAI,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;IACvE,CAAC;IAEM,KAAK,CAAC,EAAS;QACpB,MAAM,MAAM,GAAG,IAAI,CAAC,SAAS,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,SAAS,EAAE,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,CAAA;QAC5E,MAAM,OAAO,GAAG,EAAE,CAAA;QAClB,IAAI,OAAO,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;QAEvB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE;YACzC,MAAM,GAAG,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;YACrB,IAAI,GAAG,CAAC,GAAG,EAAE,GAAG,OAAO,CAAC,GAAG,EAAE,GAAG,CAAC,EAAE;gBACjC,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,CAAA;gBACrB,OAAO,GAAG,GAAG,CAAA;aACd;iBAAM,IAAI,GAAG,CAAC,GAAG,EAAE,GAAG,OAAO,CAAC,GAAG,EAAE,EAAE;gBACpC,OAAO,GAAG,IAAI,KAAK,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,GAAG,CAAC,GAAG,EAAE,CAAC,CAAA;aAC9C;SACF;QACD,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,CAAA;QAErB,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE;YACxB,OAAO,OAAO,CAAC,CAAC,CAAC,CAAA;SAClB;QACD,OAAO,IAAI,KAAK,CAAC,OAAO,CAAC,CAAA;IAC3B,CAAC;IAEM,YAAY,CAAC,GAAU;QAC5B,4DAA4D;QAC5D,IAAI,EAAE,GAAG,IAAI,CAAA;QACb,IAAI,EAAE,GAAG,GAAG,CAAA;QACZ,MAAM,EAAE,GAAG,IAAI,CAAC,MAAM,EAAE,CAAA;QACxB,MAAM,EAAE,GAAG,EAAE,CAAC,MAAM,EAAE,CAAA;QACtB,MAAM,EAAE,GAAG,EAAE,CAAC,MAAM,CAAA;QAEpB,MAAM,EAAE,GAAG,EAAE,CAAC,MAAM,CAAA;QACpB,IAAI,EAAE,GAAG,CAAC,CAAA;QAEV,IAAI,EAAE,GAAG,CAAC,CAAA;QACV,MAAM,EAAE,GAAG,EAAE,CAAA;QAEb,OAAO,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,EAAE,EAAE;YACzB,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,CAAA;YACX,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,CAAA;YACX,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,GAAG,EAAE,CAAC,CAAA;YAC3C,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,GAAG,EAAE,CAAC,CAAA;YAC3C,IAAI,MAAM,IAAI,MAAM,EAAE;gBACpB,EAAE,CAAC,IAAI,CAAC,IAAI,KAAK,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC,CAAA;aACnC;YACD,IAAI,EAAE,CAAC,GAAG,EAAE,GAAG,EAAE,CAAC,GAAG,EAAE,EAAE;gBACvB,EAAE,IAAI,CAAC,CAAA;aACR;iBAAM;gBACL,EAAE,IAAI,CAAC,CAAA;aACR;SACF;QAED,IAAI,EAAE,CAAC,MAAM,KAAK,CAAC,EAAE;YACnB,MAAM,IAAI,KAAK,CAAC,yBAAyB,CAAC,CAAA;SAC3C;QACD,IAAI,EAAE,CAAC,MAAM,KAAK,CAAC,EAAE;YACnB,OAAO,EAAE,CAAC,CAAC,CAAC,CAAA;SACb;QACD,OAAO,IAAI,KAAK,CAAC,EAAE,CAAC,CAAA;IACtB,CAAC;IAEM,QAAQ;QACb,IAAI,GAAG,GAAG,CAAC,CAAA;QACX,MAAM,EAAE,GAAG,IAAI,CAAC,MAAM,EAAE,CAAA;QACxB,KAAK,IAAI,EAAE,GAAG,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,MAAM,EAAE,EAAE,IAAI,CAAC,EAAE;YACxC,MAAM,CAAC,GAAG,EAAE,CAAC,EAAE,CAAC,CAAA;YAChB,GAAG,IAAI,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAA;SAC7B;QACD,OAAO,GAAG,CAAA;IACZ,CAAC;IAEM,UAAU,CAAC,IAAW,EAAE,IAAW;QACxC,IAAI,CAAC,GAAG,IAAI,CAAA;QACZ,IAAI,CAAC,GAAG,IAAI,CAAA;QACZ,IAAI,SAAS,CAAC,MAAM,GAAG,CAAC,EAAE;YACxB,CAAC,GAAG,CAAC,CAAA;YACL,4DAA4D;YAC5D,CAAC,GAAG,IAAI,CAAA;SACT;QAED,IAAI,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE;YACrB,OAAO,CAAC,CAAC,CAAA;SACV;QACD,IAAI,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE;YACrB,OAAO,CAAC,CAAA;SACT;QACD,IAAI,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE;YACrB,OAAO,CAAC,CAAC,CAAA;SACV;QACD,IAAI,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE;YACrB,OAAO,CAAC,CAAA;SACT;QACD,OAAO,CAAC,CAAA;IACV,CAAC;CACF"}

package/esm/unzip-pako.d.ts

@@ -1,2 +1,2 @@
 /// <reference types="node" />
-export declare function unzip(input: Buffer): Buffer;
+export declare function unzip(input: Buffer): Uint8Array;

package/esm/unzip-pako.js

@@ -1,8 +1,5 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.unzip = void 0;
-const pako_1 = require("pako");
-function unzip(input) {
-    return Buffer.from((0, pako_1.inflate)(input));
+import { inflateRaw } from 'pako';
+export function unzip(input) {
+    return inflateRaw(input.subarray(2));
 }
-exports.unzip = unzip;
+//# sourceMappingURL=unzip-pako.js.map

package/esm/unzip-pako.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"unzip-pako.js","sourceRoot":"","sources":["../src/unzip-pako.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,MAAM,CAAA;AAEjC,MAAM,UAAU,KAAK,CAAC,KAAa;IACjC,OAAO,UAAU,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAA;AACtC,CAAC"}

package/esm/unzip.js

@@ -1,5 +1,3 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.unzip = void 0;
-const zlib_1 = require("zlib");
-Object.defineProperty(exports, "unzip", { enumerable: true, get: function () { return zlib_1.inflateSync; } });
+import { inflateSync } from 'zlib';
+export { inflateSync as unzip };
+//# sourceMappingURL=unzip.js.map

package/esm/unzip.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"unzip.js","sourceRoot":"","sources":["../src/unzip.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,MAAM,CAAA;AAClC,OAAO,EAAE,WAAW,IAAI,KAAK,EAAE,CAAA"}

package/esm/util.d.ts

@@ -2,7 +2,17 @@ export declare class AbortError extends Error {
     code: string;
     constructor(message: string);
 }
-export declare function groupBlocks(blocks: any[]): any[];
+export declare function groupBlocks(blocks: {
+    offset: bigint;
+    length: bigint;
+}[]): {
+    blocks: {
+        offset: bigint;
+        length: bigint;
+    }[];
+    length: bigint;
+    offset: bigint;
+}[];
 /**
  * Properly check if the given AbortSignal is aborted.
  * Per the standard, if the signal reads as aborted,