@gmod/bam 7.6.2 → 7.7.1

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Files changed (60) hide show
  1. package/dist/bai.d.ts +6 -3
  2. package/dist/bai.js +37 -16
  3. package/dist/bai.js.map +1 -1
  4. package/dist/bamFile.d.ts +3 -3
  5. package/dist/bamFile.js +39 -12
  6. package/dist/bamFile.js.map +1 -1
  7. package/dist/chunk.d.ts +0 -1
  8. package/dist/chunk.js +0 -5
  9. package/dist/chunk.js.map +1 -1
  10. package/dist/csi.d.ts +0 -2
  11. package/dist/csi.js +4 -11
  12. package/dist/csi.js.map +1 -1
  13. package/dist/indexFile.d.ts +2 -3
  14. package/dist/indexFile.js.map +1 -1
  15. package/dist/sam.js +8 -3
  16. package/dist/sam.js.map +1 -1
  17. package/dist/util.d.ts +3 -3
  18. package/dist/util.js +35 -4
  19. package/dist/util.js.map +1 -1
  20. package/dist/virtualOffset.d.ts +8 -3
  21. package/dist/virtualOffset.js +0 -3
  22. package/dist/virtualOffset.js.map +1 -1
  23. package/esm/bai.d.ts +6 -3
  24. package/esm/bai.js +37 -16
  25. package/esm/bai.js.map +1 -1
  26. package/esm/bamFile.d.ts +3 -3
  27. package/esm/bamFile.js +39 -12
  28. package/esm/bamFile.js.map +1 -1
  29. package/esm/chunk.d.ts +0 -1
  30. package/esm/chunk.js +0 -5
  31. package/esm/chunk.js.map +1 -1
  32. package/esm/csi.d.ts +0 -2
  33. package/esm/csi.js +4 -11
  34. package/esm/csi.js.map +1 -1
  35. package/esm/indexFile.d.ts +2 -3
  36. package/esm/indexFile.js.map +1 -1
  37. package/esm/sam.js +8 -3
  38. package/esm/sam.js.map +1 -1
  39. package/esm/util.d.ts +3 -3
  40. package/esm/util.js +35 -4
  41. package/esm/util.js.map +1 -1
  42. package/esm/virtualOffset.d.ts +8 -3
  43. package/esm/virtualOffset.js +0 -3
  44. package/esm/virtualOffset.js.map +1 -1
  45. package/package.json +1 -1
  46. package/src/bai.ts +50 -20
  47. package/src/bamFile.ts +38 -11
  48. package/src/chunk.ts +0 -8
  49. package/src/csi.ts +4 -10
  50. package/src/indexFile.ts +2 -3
  51. package/src/sam.ts +8 -3
  52. package/src/util.ts +42 -7
  53. package/src/virtualOffset.ts +9 -8
  54. package/dist/long.d.ts +0 -1
  55. package/dist/long.js +0 -17
  56. package/dist/long.js.map +0 -1
  57. package/esm/long.d.ts +0 -1
  58. package/esm/long.js +0 -14
  59. package/esm/long.js.map +0 -1
  60. package/src/long.ts +0 -16
package/src/long.ts DELETED
@@ -1,16 +0,0 @@
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- const TWO_PWR_32_DBL = 2 ** 32
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-
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- // avoids dependency on long.js
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- export function longFromBytesToUnsigned(source: Uint8Array, i = 0) {
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- const low =
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- source[i]! |
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- (source[i + 1]! << 8) |
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- (source[i + 2]! << 16) |
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- (source[i + 3]! << 24)
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- const high =
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- source[i + 4]! |
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- (source[i + 5]! << 8) |
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- (source[i + 6]! << 16) |
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- (source[i + 7]! << 24)
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- return (high >>> 0) * TWO_PWR_32_DBL + (low >>> 0)
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- }