@gmod/bam 7.1.20 → 7.1.21
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +17 -9
- package/dist/bai.d.ts +2 -2
- package/dist/bai.js.map +1 -1
- package/dist/bamFile.d.ts +2 -1
- package/dist/bamFile.js +1 -0
- package/dist/bamFile.js.map +1 -1
- package/dist/chunk.d.ts +1 -1
- package/dist/htsget.d.ts +1 -1
- package/dist/htsget.js +13 -9
- package/dist/htsget.js.map +1 -1
- package/dist/indexFile.d.ts +2 -2
- package/dist/indexFile.js.map +1 -1
- package/dist/record.d.ts +10 -13
- package/dist/record.js +107 -120
- package/dist/record.js.map +1 -1
- package/dist/util.d.ts +2 -2
- package/dist/util.js +4 -7
- package/dist/util.js.map +1 -1
- package/esm/bai.d.ts +2 -2
- package/esm/bai.js +1 -1
- package/esm/bai.js.map +1 -1
- package/esm/bamFile.d.ts +2 -1
- package/esm/bamFile.js +1 -0
- package/esm/bamFile.js.map +1 -1
- package/esm/chunk.d.ts +1 -1
- package/esm/htsget.d.ts +1 -1
- package/esm/htsget.js +10 -9
- package/esm/htsget.js.map +1 -1
- package/esm/indexFile.d.ts +2 -2
- package/esm/indexFile.js.map +1 -1
- package/esm/record.d.ts +10 -13
- package/esm/record.js +107 -120
- package/esm/record.js.map +1 -1
- package/esm/util.d.ts +2 -2
- package/esm/util.js +4 -7
- package/esm/util.js.map +1 -1
- package/package.json +20 -25
- package/src/bai.ts +5 -7
- package/src/bamFile.ts +3 -1
- package/src/chunk.ts +1 -1
- package/src/htsget.ts +18 -14
- package/src/indexFile.ts +3 -2
- package/src/record.ts +130 -137
- package/src/util.ts +11 -11
package/esm/bamFile.d.ts
CHANGED
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@@ -1,8 +1,8 @@
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1
1
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import QuickLRU from '@jbrowse/quick-lru';
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2
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import BAI from './bai.ts';
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3
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-
import Chunk from './chunk.ts';
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4
3
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import CSI from './csi.ts';
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5
4
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import BAMFeature from './record.ts';
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5
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+
import type Chunk from './chunk.ts';
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6
6
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import type { Bytes } from './record.ts';
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7
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import type { BamOpts, BaseOpts } from './util.ts';
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8
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import type { GenericFilehandle } from 'generic-filehandle2';
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@@ -20,6 +20,7 @@ export interface BamRecordLike {
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export type BamRecordClass<T extends BamRecordLike = BAMFeature> = new (args: {
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bytes: Bytes;
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fileOffset: number;
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+
dataView: DataView;
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}) => T;
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export declare const BAM_MAGIC = 21840194;
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interface ChunkEntry<T> {
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package/esm/bamFile.js
CHANGED
package/esm/bamFile.js.map
CHANGED
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@@ -1 +1 @@
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1
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-
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1
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+
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|
package/esm/chunk.d.ts
CHANGED
package/esm/htsget.d.ts
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
import BamFile from './bamFile.ts';
|
|
2
|
-
import BamRecord from './record.ts';
|
|
3
2
|
import type { BamRecordClass, BamRecordLike } from './bamFile.ts';
|
|
3
|
+
import type BamRecord from './record.ts';
|
|
4
4
|
import type { BamOpts, BaseOpts } from './util.ts';
|
|
5
5
|
export default class HtsgetFile<T extends BamRecordLike = BamRecord> extends BamFile<T> {
|
|
6
6
|
private baseUrl;
|
package/esm/htsget.js
CHANGED
|
@@ -1,7 +1,9 @@
|
|
|
1
1
|
import { unzip } from '@gmod/bgzf-filehandle';
|
|
2
2
|
import BamFile, { BAM_MAGIC } from "./bamFile.js";
|
|
3
|
+
import Chunk from "./chunk.js";
|
|
3
4
|
import { parseHeaderText } from "./sam.js";
|
|
4
5
|
import { concatUint8Array } from "./util.js";
|
|
6
|
+
import { VirtualOffset } from "./virtualOffset.js";
|
|
5
7
|
async function concat(arr, opts) {
|
|
6
8
|
const res = await Promise.all(arr.map(async (chunk) => {
|
|
7
9
|
const { url, headers } = chunk;
|
|
@@ -17,11 +19,10 @@ async function concat(arr, opts) {
|
|
|
17
19
|
}
|
|
18
20
|
else {
|
|
19
21
|
// remove referer header, it is not even allowed to be specified
|
|
20
|
-
|
|
21
|
-
const { referer, ...rest } = headers;
|
|
22
|
+
const { referer: _referer, ...rest } = headers ?? {};
|
|
22
23
|
const res = await fetch(url, {
|
|
23
24
|
...opts,
|
|
24
|
-
headers:
|
|
25
|
+
headers: rest,
|
|
25
26
|
});
|
|
26
27
|
if (!res.ok) {
|
|
27
28
|
throw new Error(`HTTP ${res.status} fetching ${url}: ${await res.text()}`);
|
|
@@ -51,11 +52,11 @@ export default class HtsgetFile extends BamFile {
|
|
|
51
52
|
throw new Error(`HTTP ${result.status} fetching ${url}: ${await result.text()}`);
|
|
52
53
|
}
|
|
53
54
|
const data = await result.json();
|
|
54
|
-
const uncba = await concat(data.htsget.urls.slice(1),
|
|
55
|
-
|
|
56
|
-
minv: { dataPosition: 0, blockPosition: 0 },
|
|
57
|
-
maxv: { dataPosition: 0, blockPosition: 0 },
|
|
55
|
+
const uncba = await concat(data.htsget.urls.slice(1), {
|
|
56
|
+
signal: opts?.signal,
|
|
58
57
|
});
|
|
58
|
+
const zero = new VirtualOffset(0, 0);
|
|
59
|
+
const allRecords = await this.readBamFeatures(uncba, [], [], new Chunk(zero, zero, 0));
|
|
59
60
|
const records = [];
|
|
60
61
|
for (let i = 0, l = allRecords.length; i < l; i++) {
|
|
61
62
|
const feature = allRecords[i];
|
|
@@ -77,13 +78,13 @@ export default class HtsgetFile extends BamFile {
|
|
|
77
78
|
throw new Error(`HTTP ${result.status} fetching ${url}: ${await result.text()}`);
|
|
78
79
|
}
|
|
79
80
|
const data = await result.json();
|
|
80
|
-
const uncba = await concat(data.htsget.urls, opts);
|
|
81
|
+
const uncba = await concat(data.htsget.urls, { signal: opts.signal });
|
|
81
82
|
const dataView = new DataView(uncba.buffer);
|
|
82
83
|
if (dataView.getInt32(0, true) !== BAM_MAGIC) {
|
|
83
84
|
throw new Error('Not a BAM file');
|
|
84
85
|
}
|
|
85
86
|
const headLen = dataView.getInt32(4, true);
|
|
86
|
-
const decoder = new TextDecoder(
|
|
87
|
+
const decoder = new TextDecoder();
|
|
87
88
|
const headerText = decoder.decode(uncba.subarray(8, 8 + headLen));
|
|
88
89
|
const samHeader = parseHeaderText(headerText);
|
|
89
90
|
// use the @SQ lines in the header to figure out the
|
package/esm/htsget.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"htsget.js","sourceRoot":"","sources":["../src/htsget.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,uBAAuB,CAAA;AAE7C,OAAO,OAAO,EAAE,EAAE,SAAS,EAAE,MAAM,cAAc,CAAA;
|
|
1
|
+
{"version":3,"file":"htsget.js","sourceRoot":"","sources":["../src/htsget.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,uBAAuB,CAAA;AAE7C,OAAO,OAAO,EAAE,EAAE,SAAS,EAAE,MAAM,cAAc,CAAA;AACjD,OAAO,KAAK,MAAM,YAAY,CAAA;AAC9B,OAAO,EAAE,eAAe,EAAE,MAAM,UAAU,CAAA;AAC1C,OAAO,EAAE,gBAAgB,EAAE,MAAM,WAAW,CAAA;AAC5C,OAAO,EAAE,aAAa,EAAE,MAAM,oBAAoB,CAAA;AAWlD,KAAK,UAAU,MAAM,CAAC,GAAkB,EAAE,IAAkB;IAC1D,MAAM,GAAG,GAAG,MAAM,OAAO,CAAC,GAAG,CAC3B,GAAG,CAAC,GAAG,CAAC,KAAK,EAAC,KAAK,EAAC,EAAE;QACpB,MAAM,EAAE,GAAG,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;QAC9B,IAAI,GAAG,CAAC,UAAU,CAAC,OAAO,CAAC,EAAE,CAAC;YAC5B,oDAAoD;YACpD,+CAA+C;YAC/C,MAAM,GAAG,GAAG,MAAM,KAAK,CAAC,GAAG,CAAC,CAAA;YAC5B,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC;gBACZ,MAAM,IAAI,KAAK,CAAC,yBAAyB,CAAC,CAAA;YAC5C,CAAC;YACD,MAAM,GAAG,GAAG,MAAM,GAAG,CAAC,WAAW,EAAE,CAAA;YACnC,OAAO,IAAI,UAAU,CAAC,GAAG,CAAC,CAAA;QAC5B,CAAC;aAAM,CAAC;YACN,gEAAgE;YAChE,MAAM,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,IAAI,EAAE,GAAG,OAAO,IAAI,EAAE,CAAA;YACpD,MAAM,GAAG,GAAG,MAAM,KAAK,CAAC,GAAG,EAAE;gBAC3B,GAAG,IAAI;gBACP,OAAO,EAAE,IAAI;aACd,CAAC,CAAA;YACF,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC;gBACZ,MAAM,IAAI,KAAK,CACb,QAAQ,GAAG,CAAC,MAAM,aAAa,GAAG,KAAK,MAAM,GAAG,CAAC,IAAI,EAAE,EAAE,CAC1D,CAAA;YACH,CAAC;YACD,OAAO,IAAI,UAAU,CAAC,MAAM,GAAG,CAAC,WAAW,EAAE,CAAC,CAAA;QAChD,CAAC;IACH,CAAC,CAAC,CACH,CAAA;IAED,OAAO,gBAAgB,CAAC,MAAM,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAA;AACxE,CAAC;AAED,MAAM,CAAC,OAAO,OAAO,UAEnB,SAAQ,OAAU;IACV,OAAO,CAAQ;IAEf,OAAO,CAAQ;IAEvB,YAAY,IAIX;QACC,KAAK,CAAC,EAAE,MAAM,EAAE,IAAI,EAAE,WAAW,EAAE,IAAI,CAAC,WAAW,EAAE,CAAC,CAAA;QACtD,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,OAAO,CAAA;QAC3B,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,OAAO,CAAA;IAC7B,CAAC;IAED,KAAK,CAAC,kBAAkB,CACtB,GAAW,EACX,GAAW,EACX,GAAW,EACX,IAAc;QAEd,MAAM,IAAI,GAAG,GAAG,IAAI,CAAC,OAAO,IAAI,IAAI,CAAC,OAAO,EAAE,CAAA;QAC9C,MAAM,GAAG,GAAG,GAAG,IAAI,kBAAkB,GAAG,UAAU,GAAG,QAAQ,GAAG,aAAa,CAAA;QAC7E,MAAM,KAAK,GAAG,IAAI,CAAC,UAAU,EAAE,CAAC,GAAG,CAAC,CAAA;QACpC,IAAI,KAAK,KAAK,SAAS,EAAE,CAAC;YACxB,OAAO,EAAE,CAAA;QACX,CAAC;QACD,MAAM,MAAM,GAAG,MAAM,KAAK,CAAC,GAAG,EAAE,EAAE,GAAG,IAAI,EAAE,CAAC,CAAA;QAC5C,IAAI,CAAC,MAAM,CAAC,EAAE,EAAE,CAAC;YACf,MAAM,IAAI,KAAK,CACb,QAAQ,MAAM,CAAC,MAAM,aAAa,GAAG,KAAK,MAAM,MAAM,CAAC,IAAI,EAAE,EAAE,CAChE,CAAA;QACH,CAAC;QACD,MAAM,IAAI,GAAG,MAAM,MAAM,CAAC,IAAI,EAAE,CAAA;QAChC,MAAM,KAAK,GAAG,MAAM,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;YACpD,MAAM,EAAE,IAAI,EAAE,MAAM;SACrB,CAAC,CAAA;QAEF,MAAM,IAAI,GAAG,IAAI,aAAa,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;QACpC,MAAM,UAAU,GAAG,MAAM,IAAI,CAAC,eAAe,CAC3C,KAAK,EACL,EAAE,EACF,EAAE,EACF,IAAI,KAAK,CAAC,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC,CACzB,CAAA;QAED,MAAM,OAAO,GAAQ,EAAE,CAAA;QACvB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;YAClD,MAAM,OAAO,GAAG,UAAU,CAAC,CAAC,CAAE,CAAA;YAC9B,IAAI,OAAO,CAAC,MAAM,KAAK,KAAK,EAAE,CAAC;gBAC7B,IAAI,OAAO,CAAC,KAAK,IAAI,GAAG,EAAE,CAAC;oBACzB,MAAK;gBACP,CAAC;qBAAM,IAAI,OAAO,CAAC,GAAG,IAAI,GAAG,EAAE,CAAC;oBAC9B,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,CAAA;gBACvB,CAAC;YACH,CAAC;QACH,CAAC;QACD,OAAO,OAAO,CAAA;IAChB,CAAC;IAED,KAAK,CAAC,SAAS,CAAC,OAAiB,EAAE;QACjC,MAAM,GAAG,GAAG,GAAG,IAAI,CAAC,OAAO,IAAI,IAAI,CAAC,OAAO,gCAAgC,CAAA;QAC3E,MAAM,MAAM,GAAG,MAAM,KAAK,CAAC,GAAG,EAAE,IAAI,CAAC,CAAA;QACrC,IAAI,CAAC,MAAM,CAAC,EAAE,EAAE,CAAC;YACf,MAAM,IAAI,KAAK,CACb,QAAQ,MAAM,CAAC,MAAM,aAAa,GAAG,KAAK,MAAM,MAAM,CAAC,IAAI,EAAE,EAAE,CAChE,CAAA;QACH,CAAC;QACD,MAAM,IAAI,GAAG,MAAM,MAAM,CAAC,IAAI,EAAE,CAAA;QAChC,MAAM,KAAK,GAAG,MAAM,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,EAAE,EAAE,MAAM,EAAE,IAAI,CAAC,MAAM,EAAE,CAAC,CAAA;QACrE,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;QAE3C,IAAI,QAAQ,CAAC,QAAQ,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,SAAS,EAAE,CAAC;YAC7C,MAAM,IAAI,KAAK,CAAC,gBAAgB,CAAC,CAAA;QACnC,CAAC;QACD,MAAM,OAAO,GAAG,QAAQ,CAAC,QAAQ,CAAC,CAAC,EAAE,IAAI,CAAC,CAAA;QAE1C,MAAM,OAAO,GAAG,IAAI,WAAW,EAAE,CAAA;QACjC,MAAM,UAAU,GAAG,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,EAAE,CAAC,GAAG,OAAO,CAAC,CAAC,CAAA;QACjE,MAAM,SAAS,GAAG,eAAe,CAAC,UAAU,CAAC,CAAA;QAE7C,oDAAoD;QACpD,+CAA+C;QAC/C,MAAM,QAAQ,GAA0C,EAAE,CAAA;QAC1D,MAAM,QAAQ,GAA2B,EAAE,CAAA;QAC3C,MAAM,OAAO,GAAG,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,KAAK,IAAI,CAAC,CAAA;QACrD,KAAK,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,IAAI,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC;YAChD,IAAI,OAAO,GAAG,EAAE,CAAA;YAChB,IAAI,MAAM,GAAG,CAAC,CAAA;YACd,KAAK,MAAM,IAAI,IAAI,MAAM,CAAC,IAAI,EAAE,CAAC;gBAC/B,IAAI,IAAI,CAAC,GAAG,KAAK,IAAI,EAAE,CAAC;oBACtB,OAAO,GAAG,IAAI,CAAC,KAAK,CAAA;gBACtB,CAAC;qBAAM,IAAI,IAAI,CAAC,GAAG,KAAK,IAAI,EAAE,CAAC;oBAC7B,MAAM,GAAG,CAAC,IAAI,CAAC,KAAK,CAAA;gBACtB,CAAC;YACH,CAAC;YACD,QAAQ,CAAC,OAAO,CAAC,GAAG,KAAK,CAAA;YACzB,QAAQ,CAAC,KAAK,CAAC,GAAG,EAAE,OAAO,EAAE,MAAM,EAAE,CAAA;QACvC,CAAC;QACD,IAAI,CAAC,UAAU,GAAG,QAAQ,CAAA;QAC1B,IAAI,CAAC,UAAU,GAAG,QAAQ,CAAA;QAC1B,OAAO,SAAS,CAAA;IAClB,CAAC;CACF"}
|
package/esm/indexFile.d.ts
CHANGED
package/esm/indexFile.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"indexFile.js","sourceRoot":"","sources":["../src/indexFile.ts"],"names":[],"mappings":"
|
|
1
|
+
{"version":3,"file":"indexFile.js","sourceRoot":"","sources":["../src/indexFile.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,cAAc,EAAE,MAAM,WAAW,CAAA;AAY1C,MAAM,CAAC,OAAO,OAAgB,SAAS;IAC9B,UAAU,CAAmB;IAC7B,YAAY,CAAuB;IAE1C,YAAY,EACV,UAAU,EACV,YAAY,GAAG,CAAC,CAAS,EAAE,EAAE,CAAC,CAAC,GAIhC;QACC,IAAI,CAAC,UAAU,GAAG,UAAU,CAAA;QAC5B,IAAI,CAAC,YAAY,GAAG,YAAY,CAAA;IAClC,CAAC;IAeD,KAAK,CAAC,wBAAwB,CAAC,OAAiB,EAAE,IAAe;QAC/D,MAAM,YAAY,GAAG,MAAM,OAAO,CAAC,GAAG,CACpC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC,CACrE,CAAA;QAED,8DAA8D;QAC9D,MAAM,YAAY,GAAG,cAAc,CAAC,YAAY,CAAC,IAAI,EAAE,CAAC,CAAA;QAExD,IAAI,KAAK,GAAG,CAAC,CAAA;QACb,KAAK,MAAM,KAAK,IAAI,YAAY,EAAE,CAAC;YACjC,KAAK,IAAI,KAAK,CAAC,WAAW,EAAE,CAAA;QAC9B,CAAC;QACD,OAAO,KAAK,CAAA;IACd,CAAC;CACF"}
|
package/esm/record.d.ts
CHANGED
|
@@ -3,25 +3,22 @@ export interface Bytes {
|
|
|
3
3
|
end: number;
|
|
4
4
|
byteArray: Uint8Array;
|
|
5
5
|
}
|
|
6
|
-
interface CIGAR_AND_LENGTH {
|
|
7
|
-
length_on_ref: number;
|
|
8
|
-
NUMERIC_CIGAR: Uint32Array | number[];
|
|
9
|
-
}
|
|
10
6
|
export default class BamRecord {
|
|
11
7
|
fileOffset: number;
|
|
12
|
-
private
|
|
8
|
+
private _byteArray;
|
|
9
|
+
private _start;
|
|
10
|
+
private _end;
|
|
13
11
|
private _dataView;
|
|
14
|
-
private _cachedFlags?;
|
|
15
|
-
private _cachedRefId?;
|
|
16
|
-
private _cachedStart?;
|
|
17
12
|
private _cachedEnd?;
|
|
18
13
|
private _cachedTags?;
|
|
19
|
-
private
|
|
14
|
+
private _cachedLengthOnRef?;
|
|
15
|
+
private _cachedNumericCigar?;
|
|
20
16
|
private _cachedNUMERIC_MD?;
|
|
21
17
|
private _cachedTagsStart?;
|
|
22
18
|
constructor(args: {
|
|
23
19
|
bytes: Bytes;
|
|
24
20
|
fileOffset: number;
|
|
21
|
+
dataView: DataView;
|
|
25
22
|
});
|
|
26
23
|
get byteArray(): Uint8Array<ArrayBufferLike>;
|
|
27
24
|
get flags(): number;
|
|
@@ -38,7 +35,7 @@ export default class BamRecord {
|
|
|
38
35
|
get NUMERIC_MD(): Uint8Array<ArrayBufferLike> | undefined;
|
|
39
36
|
get tags(): Record<string, unknown>;
|
|
40
37
|
getTag(tagName: string): unknown;
|
|
41
|
-
getTagRaw(tagName: string): string | number | number[] |
|
|
38
|
+
getTagRaw(tagName: string): string | number | Uint8Array<ArrayBufferLike> | number[] | Uint32Array<ArrayBufferLike> | Int32Array<ArrayBufferLike> | Int16Array<ArrayBufferLike> | Uint16Array<ArrayBufferLike> | Int8Array<ArrayBufferLike> | Float32Array<ArrayBufferLike> | undefined;
|
|
42
39
|
private _findTag;
|
|
43
40
|
private _computeTags;
|
|
44
41
|
isPaired(): boolean;
|
|
@@ -53,8 +50,9 @@ export default class BamRecord {
|
|
|
53
50
|
isFailedQc(): boolean;
|
|
54
51
|
isDuplicate(): boolean;
|
|
55
52
|
isSupplementary(): boolean;
|
|
56
|
-
|
|
57
|
-
private
|
|
53
|
+
private _isCGTagPattern;
|
|
54
|
+
private _computeLengthOnRef;
|
|
55
|
+
private _computeNumericCigar;
|
|
58
56
|
get length_on_ref(): number;
|
|
59
57
|
get NUMERIC_CIGAR(): number[] | Uint32Array<ArrayBufferLike>;
|
|
60
58
|
get CIGAR(): string;
|
|
@@ -74,4 +72,3 @@ export default class BamRecord {
|
|
|
74
72
|
seqAt(idx: number): string | undefined;
|
|
75
73
|
toJSON(): Record<string, unknown>;
|
|
76
74
|
}
|
|
77
|
-
export {};
|