@gmod/bam 7.0.6 → 7.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +3 -3
- package/dist/bamFile.d.ts +2 -1
- package/dist/bamFile.js.map +1 -1
- package/esm/bamFile.d.ts +2 -1
- package/esm/bamFile.js.map +1 -1
- package/package.json +6 -6
- package/src/bamFile.ts +4 -1
package/CHANGELOG.md
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@@ -1,10 +1,10 @@
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# [7.1.0](https://github.com/GMOD/bam-js/compare/v7.0.6...v7.1.0) (2025-12-11)
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## [7.0.5](https://github.com/GMOD/bam-js/compare/v7.0.4...v7.0.5) (2025-11-27)
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## [7.0.6](https://github.com/GMOD/bam-js/compare/v7.0.5...v7.0.6) (2025-11-28)
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## [7.0.5](https://github.com/GMOD/bam-js/compare/v7.0.4...v7.0.5) (2025-11-27)
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## [7.0.4](https://github.com/GMOD/bam-js/compare/v7.0.3...v7.0.4) (2025-11-24)
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package/dist/bamFile.d.ts
CHANGED
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@@ -19,6 +19,7 @@ export default class BamFile {
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htsget: boolean;
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headerP?: ReturnType<BamFile['getHeaderPre']>;
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cache: QuickLRU<string, {
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bytesRead: number;
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buffer: Uint8Array;
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nextIn: number;
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}>;
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@@ -65,7 +66,7 @@ export default class BamFile {
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chunk: Chunk;
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opts: BaseOpts;
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}): Promise<{
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data: Uint8Array<
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data: Uint8Array<ArrayBufferLike>;
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cpositions: number[];
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dpositions: number[];
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chunk: Chunk;
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package/dist/bamFile.js.map
CHANGED
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@@ -1 +1 @@
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1
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|
|
1
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+
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|
package/esm/bamFile.d.ts
CHANGED
|
@@ -19,6 +19,7 @@ export default class BamFile {
|
|
|
19
19
|
htsget: boolean;
|
|
20
20
|
headerP?: ReturnType<BamFile['getHeaderPre']>;
|
|
21
21
|
cache: QuickLRU<string, {
|
|
22
|
+
bytesRead: number;
|
|
22
23
|
buffer: Uint8Array;
|
|
23
24
|
nextIn: number;
|
|
24
25
|
}>;
|
|
@@ -65,7 +66,7 @@ export default class BamFile {
|
|
|
65
66
|
chunk: Chunk;
|
|
66
67
|
opts: BaseOpts;
|
|
67
68
|
}): Promise<{
|
|
68
|
-
data: Uint8Array<
|
|
69
|
+
data: Uint8Array<ArrayBufferLike>;
|
|
69
70
|
cpositions: number[];
|
|
70
71
|
dpositions: number[];
|
|
71
72
|
chunk: Chunk;
|
package/esm/bamFile.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
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|
|
1
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+
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|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@gmod/bam",
|
|
3
|
-
"version": "7.0
|
|
3
|
+
"version": "7.1.0",
|
|
4
4
|
"description": "Parser for BAM and BAM index (bai) files",
|
|
5
5
|
"license": "MIT",
|
|
6
6
|
"repository": "GMOD/bam-js",
|
|
@@ -50,23 +50,23 @@
|
|
|
50
50
|
"genomics"
|
|
51
51
|
],
|
|
52
52
|
"dependencies": {
|
|
53
|
-
"@gmod/bgzf-filehandle": "^
|
|
53
|
+
"@gmod/bgzf-filehandle": "^6.0.3",
|
|
54
54
|
"crc": "^4.3.2",
|
|
55
55
|
"generic-filehandle2": "^2.0.1",
|
|
56
56
|
"quick-lru": "^4.0.0"
|
|
57
57
|
},
|
|
58
58
|
"devDependencies": {
|
|
59
59
|
"@types/node": "^24.10.0",
|
|
60
|
-
"@vitest/coverage-v8": "^4.0.
|
|
60
|
+
"@vitest/coverage-v8": "^4.0.15",
|
|
61
61
|
"eslint": "^9.9.0",
|
|
62
62
|
"eslint-plugin-import": "^2.31.0",
|
|
63
63
|
"eslint-plugin-unicorn": "^62.0.0",
|
|
64
|
-
"prettier": "^3.
|
|
64
|
+
"prettier": "^3.7.4",
|
|
65
65
|
"rimraf": "^6.1.2",
|
|
66
66
|
"standard-changelog": "^7.0.1",
|
|
67
67
|
"typescript": "^5.0.4",
|
|
68
|
-
"typescript-eslint": "^8.
|
|
69
|
-
"vitest": "^4.0.
|
|
68
|
+
"typescript-eslint": "^8.49.0",
|
|
69
|
+
"vitest": "^4.0.15"
|
|
70
70
|
},
|
|
71
71
|
"publishConfig": {
|
|
72
72
|
"access": "public"
|
package/src/bamFile.ts
CHANGED
|
@@ -27,7 +27,10 @@ export default class BamFile {
|
|
|
27
27
|
public index?: BAI | CSI
|
|
28
28
|
public htsget = false
|
|
29
29
|
public headerP?: ReturnType<BamFile['getHeaderPre']>
|
|
30
|
-
public cache = new QuickLRU<
|
|
30
|
+
public cache = new QuickLRU<
|
|
31
|
+
string,
|
|
32
|
+
{ bytesRead: number; buffer: Uint8Array; nextIn: number }
|
|
33
|
+
>({
|
|
31
34
|
maxSize: 1000,
|
|
32
35
|
})
|
|
33
36
|
|