@gmod/bam 5.0.4 → 5.0.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (82) hide show
  1. package/CHANGELOG.md +4 -8
  2. package/dist/bai.d.ts +17 -16
  3. package/dist/bai.js +67 -16
  4. package/dist/bai.js.map +1 -1
  5. package/dist/bamFile.d.ts +3 -8
  6. package/dist/bamFile.js +7 -31
  7. package/dist/bamFile.js.map +1 -1
  8. package/dist/chunk.d.ts +4 -4
  9. package/dist/chunk.js.map +1 -1
  10. package/dist/csi.d.ts +9 -9
  11. package/dist/csi.js +52 -45
  12. package/dist/csi.js.map +1 -1
  13. package/dist/htsget.d.ts +1 -1
  14. package/dist/htsget.js +2 -2
  15. package/dist/htsget.js.map +1 -1
  16. package/dist/indexFile.d.ts +2 -2
  17. package/dist/indexFile.js +1 -1
  18. package/dist/indexFile.js.map +1 -1
  19. package/dist/long.d.ts +3 -0
  20. package/dist/long.js +18 -0
  21. package/dist/long.js.map +1 -0
  22. package/dist/nullFilehandle.d.ts +6 -0
  23. package/dist/nullFilehandle.js +18 -0
  24. package/dist/nullFilehandle.js.map +1 -0
  25. package/dist/record.js +2 -3
  26. package/dist/record.js.map +1 -1
  27. package/dist/util.d.ts +3 -2
  28. package/dist/util.js +11 -3
  29. package/dist/util.js.map +1 -1
  30. package/dist/virtualOffset.d.ts +7 -2
  31. package/dist/virtualOffset.js +2 -14
  32. package/dist/virtualOffset.js.map +1 -1
  33. package/esm/bai.d.ts +17 -16
  34. package/esm/bai.js +67 -16
  35. package/esm/bai.js.map +1 -1
  36. package/esm/bamFile.d.ts +3 -8
  37. package/esm/bamFile.js +6 -30
  38. package/esm/bamFile.js.map +1 -1
  39. package/esm/chunk.d.ts +4 -4
  40. package/esm/chunk.js.map +1 -1
  41. package/esm/csi.d.ts +9 -9
  42. package/esm/csi.js +51 -11
  43. package/esm/csi.js.map +1 -1
  44. package/esm/htsget.d.ts +1 -1
  45. package/esm/htsget.js +2 -2
  46. package/esm/htsget.js.map +1 -1
  47. package/esm/indexFile.d.ts +2 -2
  48. package/esm/indexFile.js +1 -1
  49. package/esm/indexFile.js.map +1 -1
  50. package/esm/long.d.ts +3 -0
  51. package/esm/long.js +14 -0
  52. package/esm/long.js.map +1 -0
  53. package/esm/nullFilehandle.d.ts +6 -0
  54. package/esm/nullFilehandle.js +15 -0
  55. package/esm/nullFilehandle.js.map +1 -0
  56. package/esm/record.js +2 -3
  57. package/esm/record.js.map +1 -1
  58. package/esm/util.d.ts +3 -2
  59. package/esm/util.js +10 -3
  60. package/esm/util.js.map +1 -1
  61. package/esm/virtualOffset.d.ts +7 -2
  62. package/esm/virtualOffset.js +1 -14
  63. package/esm/virtualOffset.js.map +1 -1
  64. package/package.json +4 -4
  65. package/src/bai.ts +83 -30
  66. package/src/bamFile.ts +21 -41
  67. package/src/chunk.ts +3 -3
  68. package/src/csi.ts +58 -21
  69. package/src/htsget.ts +3 -2
  70. package/src/indexFile.ts +3 -2
  71. package/src/long.ts +16 -0
  72. package/src/nullFilehandle.ts +16 -0
  73. package/src/record.ts +14 -12
  74. package/src/util.ts +14 -6
  75. package/src/virtualOffset.ts +15 -22
  76. package/dist/errors.d.ts +0 -23
  77. package/dist/errors.js +0 -33
  78. package/dist/errors.js.map +0 -1
  79. package/esm/errors.d.ts +0 -23
  80. package/esm/errors.js +0 -24
  81. package/esm/errors.js.map +0 -1
  82. package/src/errors.ts +0 -22
package/src/errors.ts DELETED
@@ -1,22 +0,0 @@
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- export class BamError extends Error {}
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-
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- /** Error caused by encountering a part of the BAM spec that has not yet been implemented */
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- export class BamUnimplementedError extends Error {}
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-
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- /** An error caused by malformed data. */
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- export class BamMalformedError extends BamError {}
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-
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- /**
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- * An error caused by attempting to read beyond the end of the defined data.
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- */
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- export class BamBufferOverrunError extends BamMalformedError {}
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-
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- /**
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- * An error caused by data being too big, exceeding a size limit.
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- */
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- export class BamSizeLimitError extends BamError {}
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-
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- /**
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- * An invalid argument was supplied to a bam-js method or object.
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- */
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- export class BamArgumentError extends BamError {}