@gmod/bam 2.0.3 → 3.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +9 -4
- package/README.md +10 -42
- package/dist/bai.js +6 -1
- package/dist/bai.js.map +1 -1
- package/dist/bamFile.js +16 -14
- package/dist/bamFile.js.map +1 -1
- package/dist/csi.d.ts +1 -1
- package/dist/csi.js +4 -2
- package/dist/csi.js.map +1 -1
- package/dist/htsget.js +1 -1
- package/dist/record.d.ts +45 -55
- package/dist/record.js +123 -208
- package/dist/record.js.map +1 -1
- package/dist/util.d.ts +0 -2
- package/dist/util.js +3 -10
- package/dist/util.js.map +1 -1
- package/esm/bai.js +6 -1
- package/esm/bai.js.map +1 -1
- package/esm/bamFile.js +14 -12
- package/esm/bamFile.js.map +1 -1
- package/esm/csi.d.ts +1 -1
- package/esm/csi.js +4 -2
- package/esm/csi.js.map +1 -1
- package/esm/record.d.ts +45 -55
- package/esm/record.js +123 -208
- package/esm/record.js.map +1 -1
- package/esm/util.d.ts +0 -2
- package/esm/util.js +3 -9
- package/esm/util.js.map +1 -1
- package/package.json +15 -16
- package/src/bai.ts +7 -2
- package/src/bamFile.ts +14 -12
- package/src/csi.ts +5 -3
- package/src/record.ts +140 -243
- package/src/util.ts +4 -15
package/src/util.ts
CHANGED
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@@ -6,16 +6,6 @@ export function timeout(ms: number) {
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6
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return new Promise(resolve => setTimeout(resolve, ms))
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}
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9
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export function longToNumber(long: Long) {
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10
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if (
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long.greaterThan(Number.MAX_SAFE_INTEGER) ||
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long.lessThan(Number.MIN_SAFE_INTEGER)
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) {
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throw new Error('integer overflow')
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}
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return long.toNumber()
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}
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-
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/**
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* Properly check if the given AbortSignal is aborted.
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* Per the standard, if the signal reads as aborted,
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@@ -113,13 +103,12 @@ export function optimizeChunks(chunks: Chunk[], lowest?: VirtualOffset) {
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}
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export function parsePseudoBin(bytes: Buffer, offset: number) {
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-
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Long.fromBytesLE(
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return {
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lineCount: Long.fromBytesLE(
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Array.prototype.slice.call(bytes, offset, offset + 8),
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true,
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),
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return { lineCount }
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+
).toNumber(),
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}
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}
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export function findFirstData(
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