@gmod/bam 1.1.8 → 1.1.9
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +8 -0
- package/README.md +2 -3
- package/dist/bai.d.ts +2 -0
- package/dist/bai.js +300 -548
- package/dist/bai.js.map +1 -0
- package/dist/bamFile.d.ts +4 -6
- package/dist/bamFile.js +675 -1203
- package/dist/bamFile.js.map +1 -0
- package/dist/chunk.js +34 -69
- package/dist/chunk.js.map +1 -0
- package/dist/constants.js +27 -35
- package/dist/constants.js.map +1 -0
- package/dist/csi.js +317 -515
- package/dist/csi.js.map +1 -0
- package/dist/errors.js +64 -120
- package/dist/errors.js.map +1 -0
- package/dist/htsget.js +275 -396
- package/dist/htsget.js.map +1 -0
- package/dist/index.js +16 -54
- package/dist/index.js.map +1 -0
- package/dist/indexFile.d.ts +1 -2
- package/dist/indexFile.js +77 -163
- package/dist/indexFile.js.map +1 -0
- package/dist/record.js +496 -707
- package/dist/record.js.map +1 -0
- package/dist/sam.js +16 -49
- package/dist/sam.js.map +1 -0
- package/dist/util.d.ts +0 -1
- package/dist/util.js +115 -126
- package/dist/util.js.map +1 -0
- package/dist/virtualOffset.js +44 -77
- package/dist/virtualOffset.js.map +1 -0
- package/esm/bai.d.ts +26 -0
- package/esm/bai.js +191 -0
- package/esm/bai.js.map +1 -0
- package/esm/bamFile.d.ts +77 -0
- package/esm/bamFile.js +388 -0
- package/esm/bamFile.js.map +1 -0
- package/esm/chunk.d.ts +18 -0
- package/esm/chunk.js +33 -0
- package/esm/chunk.js.map +1 -0
- package/esm/constants.d.ts +15 -0
- package/esm/constants.js +27 -0
- package/esm/constants.js.map +1 -0
- package/esm/csi.d.ts +35 -0
- package/esm/csi.js +209 -0
- package/esm/csi.js.map +1 -0
- package/esm/errors.d.ts +23 -0
- package/esm/errors.js +24 -0
- package/esm/errors.js.map +1 -0
- package/esm/htsget.d.ts +33 -0
- package/esm/htsget.js +100 -0
- package/esm/htsget.js.map +1 -0
- package/esm/index.d.ts +6 -0
- package/esm/index.js +7 -0
- package/esm/index.js.map +1 -0
- package/esm/indexFile.d.ts +27 -0
- package/esm/indexFile.js +27 -0
- package/esm/indexFile.js.map +1 -0
- package/esm/record.d.ts +88 -0
- package/esm/record.js +534 -0
- package/esm/record.js.map +1 -0
- package/esm/sam.d.ts +7 -0
- package/esm/sam.js +16 -0
- package/esm/sam.js.map +1 -0
- package/esm/util.d.ts +35 -0
- package/esm/util.js +92 -0
- package/esm/util.js.map +1 -0
- package/esm/virtualOffset.d.ts +10 -0
- package/esm/virtualOffset.js +37 -0
- package/esm/virtualOffset.js.map +1 -0
- package/package.json +21 -29
- package/dist/declare.d.js +0 -2
package/dist/bamFile.js
CHANGED
|
@@ -1,1223 +1,695 @@
|
|
|
1
1
|
"use strict";
|
|
2
|
-
|
|
3
|
-
|
|
4
|
-
|
|
5
|
-
|
|
6
|
-
|
|
7
|
-
|
|
8
|
-
|
|
9
|
-
});
|
|
10
|
-
|
|
11
|
-
exports.default = exports.BAM_MAGIC = void 0;
|
|
12
|
-
|
|
13
|
-
var _now = _interopRequireDefault(require("@babel/runtime-corejs3/core-js-stable/date/now"));
|
|
14
|
-
|
|
15
|
-
var _sort = _interopRequireDefault(require("@babel/runtime-corejs3/core-js-stable/instance/sort"));
|
|
16
|
-
|
|
17
|
-
var _filter = _interopRequireDefault(require("@babel/runtime-corejs3/core-js-stable/instance/filter"));
|
|
18
|
-
|
|
19
|
-
var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime-corejs3/helpers/slicedToArray"));
|
|
20
|
-
|
|
21
|
-
var _forEach = _interopRequireDefault(require("@babel/runtime-corejs3/core-js-stable/instance/for-each"));
|
|
22
|
-
|
|
23
|
-
var _promise = _interopRequireDefault(require("@babel/runtime-corejs3/core-js-stable/promise"));
|
|
24
|
-
|
|
25
|
-
var _map = _interopRequireDefault(require("@babel/runtime-corejs3/core-js-stable/instance/map"));
|
|
26
|
-
|
|
27
|
-
var _reduce = _interopRequireDefault(require("@babel/runtime-corejs3/core-js-stable/instance/reduce"));
|
|
28
|
-
|
|
29
|
-
var _concat = _interopRequireDefault(require("@babel/runtime-corejs3/core-js-stable/instance/concat"));
|
|
30
|
-
|
|
31
|
-
var _regenerator = _interopRequireDefault(require("@babel/runtime-corejs3/regenerator"));
|
|
32
|
-
|
|
33
|
-
var _slice = _interopRequireDefault(require("@babel/runtime-corejs3/core-js-stable/instance/slice"));
|
|
34
|
-
|
|
35
|
-
var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime-corejs3/helpers/asyncToGenerator"));
|
|
36
|
-
|
|
37
|
-
var _bind = _interopRequireDefault(require("@babel/runtime-corejs3/core-js-stable/instance/bind"));
|
|
38
|
-
|
|
39
|
-
var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime-corejs3/helpers/classCallCheck"));
|
|
40
|
-
|
|
41
|
-
var _createClass2 = _interopRequireDefault(require("@babel/runtime-corejs3/helpers/createClass"));
|
|
42
|
-
|
|
43
|
-
var _defineProperty2 = _interopRequireDefault(require("@babel/runtime-corejs3/helpers/defineProperty"));
|
|
44
|
-
|
|
45
|
-
var _wrapAsyncGenerator2 = _interopRequireDefault(require("@babel/runtime-corejs3/helpers/wrapAsyncGenerator"));
|
|
46
|
-
|
|
47
|
-
var _awaitAsyncGenerator2 = _interopRequireDefault(require("@babel/runtime-corejs3/helpers/awaitAsyncGenerator"));
|
|
48
|
-
|
|
49
|
-
var _asyncGeneratorDelegate2 = _interopRequireDefault(require("@babel/runtime-corejs3/helpers/asyncGeneratorDelegate"));
|
|
50
|
-
|
|
51
|
-
var _asyncIterator2 = _interopRequireDefault(require("@babel/runtime-corejs3/helpers/asyncIterator"));
|
|
52
|
-
|
|
53
|
-
var _abortablePromiseCache = _interopRequireDefault(require("abortable-promise-cache"));
|
|
54
|
-
|
|
55
|
-
var _bai = _interopRequireDefault(require("./bai"));
|
|
56
|
-
|
|
57
|
-
var _csi = _interopRequireDefault(require("./csi"));
|
|
58
|
-
|
|
59
|
-
var _bufferCrc = _interopRequireDefault(require("buffer-crc32"));
|
|
60
|
-
|
|
61
|
-
var _bgzfFilehandle = require("@gmod/bgzf-filehandle");
|
|
62
|
-
|
|
63
|
-
var _object = _interopRequireDefault(require("object.entries-ponyfill"));
|
|
64
|
-
|
|
65
|
-
var _quickLru = _interopRequireDefault(require("quick-lru"));
|
|
66
|
-
|
|
67
|
-
var _genericFilehandle = require("generic-filehandle");
|
|
68
|
-
|
|
69
|
-
var _record = _interopRequireDefault(require("./record"));
|
|
70
|
-
|
|
71
|
-
var _sam = require("./sam");
|
|
72
|
-
|
|
73
|
-
var _util = require("./util");
|
|
74
|
-
|
|
75
|
-
var BAM_MAGIC = 21840194;
|
|
76
|
-
exports.BAM_MAGIC = BAM_MAGIC;
|
|
77
|
-
var blockLen = 1 << 16;
|
|
78
|
-
|
|
79
|
-
var BamFile = /*#__PURE__*/function () {
|
|
80
|
-
/**
|
|
81
|
-
* @param {object} args
|
|
82
|
-
* @param {string} [args.bamPath]
|
|
83
|
-
* @param {FileHandle} [args.bamFilehandle]
|
|
84
|
-
* @param {string} [args.baiPath]
|
|
85
|
-
* @param {FileHandle} [args.baiFilehandle]
|
|
86
|
-
*/
|
|
87
|
-
function BamFile(_ref) {
|
|
88
|
-
var _context;
|
|
89
|
-
|
|
90
|
-
var bamFilehandle = _ref.bamFilehandle,
|
|
91
|
-
bamPath = _ref.bamPath,
|
|
92
|
-
bamUrl = _ref.bamUrl,
|
|
93
|
-
baiPath = _ref.baiPath,
|
|
94
|
-
baiFilehandle = _ref.baiFilehandle,
|
|
95
|
-
baiUrl = _ref.baiUrl,
|
|
96
|
-
csiPath = _ref.csiPath,
|
|
97
|
-
csiFilehandle = _ref.csiFilehandle,
|
|
98
|
-
csiUrl = _ref.csiUrl,
|
|
99
|
-
cacheSize = _ref.cacheSize,
|
|
100
|
-
fetchSizeLimit = _ref.fetchSizeLimit,
|
|
101
|
-
chunkSizeLimit = _ref.chunkSizeLimit,
|
|
102
|
-
_ref$yieldThreadTime = _ref.yieldThreadTime,
|
|
103
|
-
yieldThreadTime = _ref$yieldThreadTime === void 0 ? 100 : _ref$yieldThreadTime,
|
|
104
|
-
_ref$renameRefSeqs = _ref.renameRefSeqs,
|
|
105
|
-
renameRefSeqs = _ref$renameRefSeqs === void 0 ? function (n) {
|
|
106
|
-
return n;
|
|
107
|
-
} : _ref$renameRefSeqs;
|
|
108
|
-
(0, _classCallCheck2.default)(this, BamFile);
|
|
109
|
-
(0, _defineProperty2.default)(this, "renameRefSeq", void 0);
|
|
110
|
-
(0, _defineProperty2.default)(this, "bam", void 0);
|
|
111
|
-
(0, _defineProperty2.default)(this, "index", void 0);
|
|
112
|
-
(0, _defineProperty2.default)(this, "chunkSizeLimit", void 0);
|
|
113
|
-
(0, _defineProperty2.default)(this, "fetchSizeLimit", void 0);
|
|
114
|
-
(0, _defineProperty2.default)(this, "header", void 0);
|
|
115
|
-
(0, _defineProperty2.default)(this, "featureCache", void 0);
|
|
116
|
-
(0, _defineProperty2.default)(this, "chrToIndex", void 0);
|
|
117
|
-
(0, _defineProperty2.default)(this, "indexToChr", void 0);
|
|
118
|
-
(0, _defineProperty2.default)(this, "yieldThreadTime", void 0);
|
|
119
|
-
this.renameRefSeq = renameRefSeqs;
|
|
120
|
-
|
|
121
|
-
if (bamFilehandle) {
|
|
122
|
-
this.bam = bamFilehandle;
|
|
123
|
-
} else if (bamPath) {
|
|
124
|
-
this.bam = new _genericFilehandle.LocalFile(bamPath);
|
|
125
|
-
} else if (bamUrl) {
|
|
126
|
-
this.bam = new _genericFilehandle.RemoteFile(bamUrl);
|
|
127
|
-
} else {
|
|
128
|
-
throw new Error('unable to initialize bam');
|
|
129
|
-
}
|
|
130
|
-
|
|
131
|
-
if (csiFilehandle) {
|
|
132
|
-
this.index = new _csi.default({
|
|
133
|
-
filehandle: csiFilehandle
|
|
134
|
-
});
|
|
135
|
-
} else if (csiPath) {
|
|
136
|
-
this.index = new _csi.default({
|
|
137
|
-
filehandle: new _genericFilehandle.LocalFile(csiPath)
|
|
138
|
-
});
|
|
139
|
-
} else if (csiUrl) {
|
|
140
|
-
this.index = new _csi.default({
|
|
141
|
-
filehandle: new _genericFilehandle.RemoteFile(csiUrl)
|
|
142
|
-
});
|
|
143
|
-
} else if (baiFilehandle) {
|
|
144
|
-
this.index = new _bai.default({
|
|
145
|
-
filehandle: baiFilehandle
|
|
146
|
-
});
|
|
147
|
-
} else if (baiPath) {
|
|
148
|
-
this.index = new _bai.default({
|
|
149
|
-
filehandle: new _genericFilehandle.LocalFile(baiPath)
|
|
150
|
-
});
|
|
151
|
-
} else if (baiUrl) {
|
|
152
|
-
this.index = new _bai.default({
|
|
153
|
-
filehandle: new _genericFilehandle.RemoteFile(baiUrl)
|
|
154
|
-
});
|
|
155
|
-
} else if (bamPath) {
|
|
156
|
-
this.index = new _bai.default({
|
|
157
|
-
filehandle: new _genericFilehandle.LocalFile("".concat(bamPath, ".bai"))
|
|
158
|
-
});
|
|
159
|
-
} else if (bamUrl) {
|
|
160
|
-
this.index = new _bai.default({
|
|
161
|
-
filehandle: new _genericFilehandle.RemoteFile("".concat(bamUrl, ".bai"))
|
|
162
|
-
});
|
|
163
|
-
} else {
|
|
164
|
-
throw new Error('unable to infer index format');
|
|
165
|
-
}
|
|
166
|
-
|
|
167
|
-
this.featureCache = new _abortablePromiseCache.default({
|
|
168
|
-
cache: new _quickLru.default({
|
|
169
|
-
maxSize: cacheSize !== undefined ? cacheSize : 50
|
|
170
|
-
}),
|
|
171
|
-
fill: (0, _bind.default)(_context = this._readChunk).call(_context, this)
|
|
2
|
+
var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
|
|
3
|
+
function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
|
|
4
|
+
return new (P || (P = Promise))(function (resolve, reject) {
|
|
5
|
+
function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
|
|
6
|
+
function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
|
|
7
|
+
function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
|
|
8
|
+
step((generator = generator.apply(thisArg, _arguments || [])).next());
|
|
172
9
|
});
|
|
173
|
-
|
|
174
|
-
|
|
175
|
-
|
|
176
|
-
|
|
177
|
-
|
|
178
|
-
|
|
179
|
-
|
|
180
|
-
|
|
181
|
-
|
|
182
|
-
|
|
183
|
-
|
|
184
|
-
|
|
185
|
-
|
|
186
|
-
|
|
187
|
-
|
|
188
|
-
|
|
189
|
-
|
|
190
|
-
|
|
191
|
-
|
|
192
|
-
|
|
193
|
-
|
|
194
|
-
|
|
195
|
-
indexToChr,
|
|
196
|
-
_args = arguments;
|
|
197
|
-
|
|
198
|
-
return _regenerator.default.wrap(function _callee$(_context2) {
|
|
199
|
-
while (1) {
|
|
200
|
-
switch (_context2.prev = _context2.next) {
|
|
201
|
-
case 0:
|
|
202
|
-
origOpts = _args.length > 0 && _args[0] !== undefined ? _args[0] : {};
|
|
203
|
-
opts = (0, _util.makeOpts)(origOpts);
|
|
204
|
-
_context2.next = 4;
|
|
205
|
-
return this.index.parse(opts);
|
|
206
|
-
|
|
207
|
-
case 4:
|
|
208
|
-
indexData = _context2.sent;
|
|
209
|
-
ret = indexData.firstDataLine ? indexData.firstDataLine.blockPosition + 65535 : undefined;
|
|
210
|
-
|
|
211
|
-
if (!ret) {
|
|
212
|
-
_context2.next = 17;
|
|
213
|
-
break;
|
|
214
|
-
}
|
|
215
|
-
|
|
216
|
-
_context2.next = 9;
|
|
217
|
-
return this.bam.read(Buffer.alloc(ret + blockLen), 0, ret + blockLen, 0, opts);
|
|
218
|
-
|
|
219
|
-
case 9:
|
|
220
|
-
res = _context2.sent;
|
|
221
|
-
bytesRead = res.bytesRead;
|
|
222
|
-
buffer = res.buffer;
|
|
223
|
-
|
|
224
|
-
if (bytesRead) {
|
|
225
|
-
_context2.next = 14;
|
|
226
|
-
break;
|
|
227
|
-
}
|
|
228
|
-
|
|
229
|
-
throw new Error('Error reading header');
|
|
230
|
-
|
|
231
|
-
case 14:
|
|
232
|
-
if (bytesRead < ret) {
|
|
233
|
-
buffer = (0, _slice.default)(buffer).call(buffer, 0, bytesRead);
|
|
234
|
-
} else {
|
|
235
|
-
buffer = (0, _slice.default)(buffer).call(buffer, 0, ret);
|
|
236
|
-
}
|
|
237
|
-
|
|
238
|
-
_context2.next = 20;
|
|
239
|
-
break;
|
|
240
|
-
|
|
241
|
-
case 17:
|
|
242
|
-
_context2.next = 19;
|
|
243
|
-
return this.bam.readFile(opts);
|
|
244
|
-
|
|
245
|
-
case 19:
|
|
246
|
-
buffer = _context2.sent;
|
|
247
|
-
|
|
248
|
-
case 20:
|
|
249
|
-
_context2.next = 22;
|
|
250
|
-
return (0, _bgzfFilehandle.unzip)(buffer);
|
|
251
|
-
|
|
252
|
-
case 22:
|
|
253
|
-
uncba = _context2.sent;
|
|
254
|
-
|
|
255
|
-
if (!(uncba.readInt32LE(0) !== BAM_MAGIC)) {
|
|
256
|
-
_context2.next = 25;
|
|
257
|
-
break;
|
|
258
|
-
}
|
|
259
|
-
|
|
260
|
-
throw new Error('Not a BAM file');
|
|
261
|
-
|
|
262
|
-
case 25:
|
|
263
|
-
headLen = uncba.readInt32LE(4);
|
|
264
|
-
this.header = uncba.toString('utf8', 8, 8 + headLen);
|
|
265
|
-
_context2.next = 29;
|
|
266
|
-
return this._readRefSeqs(headLen + 8, 65535, opts);
|
|
267
|
-
|
|
268
|
-
case 29:
|
|
269
|
-
_yield$this$_readRefS = _context2.sent;
|
|
270
|
-
chrToIndex = _yield$this$_readRefS.chrToIndex;
|
|
271
|
-
indexToChr = _yield$this$_readRefS.indexToChr;
|
|
272
|
-
this.chrToIndex = chrToIndex;
|
|
273
|
-
this.indexToChr = indexToChr;
|
|
274
|
-
return _context2.abrupt("return", (0, _sam.parseHeaderText)(this.header));
|
|
275
|
-
|
|
276
|
-
case 35:
|
|
277
|
-
case "end":
|
|
278
|
-
return _context2.stop();
|
|
279
|
-
}
|
|
280
|
-
}
|
|
281
|
-
}, _callee, this);
|
|
282
|
-
}));
|
|
283
|
-
|
|
284
|
-
function getHeader() {
|
|
285
|
-
return _getHeader.apply(this, arguments);
|
|
286
|
-
}
|
|
287
|
-
|
|
288
|
-
return getHeader;
|
|
289
|
-
}()
|
|
290
|
-
}, {
|
|
291
|
-
key: "getHeaderText",
|
|
292
|
-
value: function () {
|
|
293
|
-
var _getHeaderText = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
|
|
294
|
-
var opts,
|
|
295
|
-
_args2 = arguments;
|
|
296
|
-
return _regenerator.default.wrap(function _callee2$(_context3) {
|
|
297
|
-
while (1) {
|
|
298
|
-
switch (_context3.prev = _context3.next) {
|
|
299
|
-
case 0:
|
|
300
|
-
opts = _args2.length > 0 && _args2[0] !== undefined ? _args2[0] : {};
|
|
301
|
-
_context3.next = 3;
|
|
302
|
-
return this.getHeader(opts);
|
|
303
|
-
|
|
304
|
-
case 3:
|
|
305
|
-
return _context3.abrupt("return", this.header);
|
|
306
|
-
|
|
307
|
-
case 4:
|
|
308
|
-
case "end":
|
|
309
|
-
return _context3.stop();
|
|
310
|
-
}
|
|
311
|
-
}
|
|
312
|
-
}, _callee2, this);
|
|
313
|
-
}));
|
|
314
|
-
|
|
315
|
-
function getHeaderText() {
|
|
316
|
-
return _getHeaderText.apply(this, arguments);
|
|
317
|
-
}
|
|
318
|
-
|
|
319
|
-
return getHeaderText;
|
|
320
|
-
}() // the full length of the refseq block is not given in advance so this grabs a chunk and
|
|
321
|
-
// doubles it if all refseqs haven't been processed
|
|
322
|
-
|
|
323
|
-
}, {
|
|
324
|
-
key: "_readRefSeqs",
|
|
325
|
-
value: function () {
|
|
326
|
-
var _readRefSeqs2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3(start, refSeqBytes) {
|
|
327
|
-
var opts,
|
|
328
|
-
res,
|
|
329
|
-
bytesRead,
|
|
330
|
-
buffer,
|
|
331
|
-
uncba,
|
|
332
|
-
nRef,
|
|
333
|
-
p,
|
|
334
|
-
chrToIndex,
|
|
335
|
-
indexToChr,
|
|
336
|
-
i,
|
|
337
|
-
lName,
|
|
338
|
-
refName,
|
|
339
|
-
lRef,
|
|
340
|
-
_args3 = arguments;
|
|
341
|
-
return _regenerator.default.wrap(function _callee3$(_context4) {
|
|
342
|
-
while (1) {
|
|
343
|
-
switch (_context4.prev = _context4.next) {
|
|
344
|
-
case 0:
|
|
345
|
-
opts = _args3.length > 2 && _args3[2] !== undefined ? _args3[2] : {};
|
|
346
|
-
|
|
347
|
-
if (!(start > refSeqBytes)) {
|
|
348
|
-
_context4.next = 3;
|
|
349
|
-
break;
|
|
350
|
-
}
|
|
351
|
-
|
|
352
|
-
return _context4.abrupt("return", this._readRefSeqs(start, refSeqBytes * 2, opts));
|
|
353
|
-
|
|
354
|
-
case 3:
|
|
355
|
-
_context4.next = 5;
|
|
356
|
-
return this.bam.read(Buffer.alloc(refSeqBytes + blockLen), 0, refSeqBytes, 0, opts);
|
|
357
|
-
|
|
358
|
-
case 5:
|
|
359
|
-
res = _context4.sent;
|
|
360
|
-
bytesRead = res.bytesRead;
|
|
361
|
-
buffer = res.buffer;
|
|
362
|
-
|
|
363
|
-
if (bytesRead) {
|
|
364
|
-
_context4.next = 10;
|
|
365
|
-
break;
|
|
366
|
-
}
|
|
367
|
-
|
|
368
|
-
throw new Error('Error reading refseqs from header');
|
|
369
|
-
|
|
370
|
-
case 10:
|
|
371
|
-
if (bytesRead < refSeqBytes) {
|
|
372
|
-
buffer = (0, _slice.default)(buffer).call(buffer, 0, bytesRead);
|
|
373
|
-
} else {
|
|
374
|
-
buffer = (0, _slice.default)(buffer).call(buffer, 0, refSeqBytes);
|
|
375
|
-
}
|
|
376
|
-
|
|
377
|
-
_context4.next = 13;
|
|
378
|
-
return (0, _bgzfFilehandle.unzip)(buffer);
|
|
379
|
-
|
|
380
|
-
case 13:
|
|
381
|
-
uncba = _context4.sent;
|
|
382
|
-
nRef = uncba.readInt32LE(start);
|
|
383
|
-
p = start + 4;
|
|
384
|
-
chrToIndex = {};
|
|
385
|
-
indexToChr = [];
|
|
386
|
-
i = 0;
|
|
387
|
-
|
|
388
|
-
case 19:
|
|
389
|
-
if (!(i < nRef)) {
|
|
390
|
-
_context4.next = 35;
|
|
391
|
-
break;
|
|
392
|
-
}
|
|
393
|
-
|
|
394
|
-
_context4.next = 22;
|
|
395
|
-
return (0, _util.abortBreakPoint)(opts.signal);
|
|
396
|
-
|
|
397
|
-
case 22:
|
|
398
|
-
lName = uncba.readInt32LE(p);
|
|
399
|
-
refName = uncba.toString('utf8', p + 4, p + 4 + lName - 1);
|
|
400
|
-
refName = this.renameRefSeq(refName);
|
|
401
|
-
lRef = uncba.readInt32LE(p + lName + 4);
|
|
402
|
-
chrToIndex[refName] = i;
|
|
403
|
-
indexToChr.push({
|
|
404
|
-
refName: refName,
|
|
405
|
-
length: lRef
|
|
406
|
-
});
|
|
407
|
-
p = p + 8 + lName;
|
|
408
|
-
|
|
409
|
-
if (!(p > uncba.length)) {
|
|
410
|
-
_context4.next = 32;
|
|
411
|
-
break;
|
|
412
|
-
}
|
|
413
|
-
|
|
414
|
-
console.warn("BAM header is very big. Re-fetching ".concat(refSeqBytes, " bytes."));
|
|
415
|
-
return _context4.abrupt("return", this._readRefSeqs(start, refSeqBytes * 2, opts));
|
|
416
|
-
|
|
417
|
-
case 32:
|
|
418
|
-
i += 1;
|
|
419
|
-
_context4.next = 19;
|
|
420
|
-
break;
|
|
421
|
-
|
|
422
|
-
case 35:
|
|
423
|
-
return _context4.abrupt("return", {
|
|
424
|
-
chrToIndex: chrToIndex,
|
|
425
|
-
indexToChr: indexToChr
|
|
426
|
-
});
|
|
427
|
-
|
|
428
|
-
case 36:
|
|
429
|
-
case "end":
|
|
430
|
-
return _context4.stop();
|
|
10
|
+
};
|
|
11
|
+
var __generator = (this && this.__generator) || function (thisArg, body) {
|
|
12
|
+
var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
|
|
13
|
+
return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
|
|
14
|
+
function verb(n) { return function (v) { return step([n, v]); }; }
|
|
15
|
+
function step(op) {
|
|
16
|
+
if (f) throw new TypeError("Generator is already executing.");
|
|
17
|
+
while (_) try {
|
|
18
|
+
if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
|
|
19
|
+
if (y = 0, t) op = [op[0] & 2, t.value];
|
|
20
|
+
switch (op[0]) {
|
|
21
|
+
case 0: case 1: t = op; break;
|
|
22
|
+
case 4: _.label++; return { value: op[1], done: false };
|
|
23
|
+
case 5: _.label++; y = op[1]; op = [0]; continue;
|
|
24
|
+
case 7: op = _.ops.pop(); _.trys.pop(); continue;
|
|
25
|
+
default:
|
|
26
|
+
if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
|
|
27
|
+
if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
|
|
28
|
+
if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
|
|
29
|
+
if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
|
|
30
|
+
if (t[2]) _.ops.pop();
|
|
31
|
+
_.trys.pop(); continue;
|
|
431
32
|
}
|
|
432
|
-
|
|
433
|
-
}
|
|
434
|
-
|
|
435
|
-
|
|
436
|
-
|
|
437
|
-
|
|
438
|
-
|
|
439
|
-
|
|
440
|
-
|
|
441
|
-
|
|
442
|
-
|
|
443
|
-
|
|
444
|
-
|
|
445
|
-
|
|
446
|
-
|
|
447
|
-
|
|
448
|
-
|
|
449
|
-
|
|
450
|
-
|
|
451
|
-
|
|
452
|
-
|
|
453
|
-
|
|
454
|
-
|
|
455
|
-
|
|
456
|
-
|
|
457
|
-
|
|
458
|
-
|
|
459
|
-
|
|
460
|
-
|
|
461
|
-
|
|
462
|
-
|
|
463
|
-
|
|
464
|
-
|
|
465
|
-
|
|
466
|
-
|
|
467
|
-
|
|
468
|
-
|
|
469
|
-
|
|
470
|
-
|
|
471
|
-
|
|
472
|
-
|
|
473
|
-
|
|
474
|
-
|
|
475
|
-
|
|
476
|
-
|
|
477
|
-
|
|
478
|
-
|
|
479
|
-
|
|
480
|
-
|
|
481
|
-
|
|
482
|
-
|
|
483
|
-
|
|
484
|
-
|
|
485
|
-
|
|
486
|
-
|
|
487
|
-
|
|
488
|
-
|
|
489
|
-
|
|
490
|
-
|
|
491
|
-
|
|
492
|
-
|
|
493
|
-
|
|
494
|
-
|
|
495
|
-
|
|
496
|
-
|
|
497
|
-
|
|
498
|
-
|
|
499
|
-
|
|
500
|
-
|
|
501
|
-
|
|
502
|
-
|
|
503
|
-
|
|
504
|
-
|
|
505
|
-
|
|
506
|
-
|
|
507
|
-
|
|
508
|
-
|
|
509
|
-
|
|
510
|
-
|
|
511
|
-
|
|
512
|
-
|
|
513
|
-
|
|
514
|
-
|
|
515
|
-
|
|
516
|
-
|
|
517
|
-
|
|
518
|
-
|
|
519
|
-
|
|
520
|
-
|
|
521
|
-
|
|
522
|
-
|
|
523
|
-
|
|
524
|
-
|
|
525
|
-
|
|
526
|
-
|
|
527
|
-
|
|
528
|
-
|
|
529
|
-
|
|
530
|
-
|
|
531
|
-
|
|
532
|
-
|
|
533
|
-
|
|
534
|
-
|
|
535
|
-
|
|
536
|
-
|
|
537
|
-
|
|
538
|
-
|
|
539
|
-
|
|
540
|
-
|
|
541
|
-
return _context5.stop();
|
|
542
|
-
}
|
|
543
|
-
}
|
|
544
|
-
}, _callee4, this, [[4, 21, 25, 35], [26,, 30, 34]]);
|
|
545
|
-
}));
|
|
546
|
-
|
|
547
|
-
function getRecordsForRange(_x3, _x4, _x5) {
|
|
548
|
-
return _getRecordsForRange.apply(this, arguments);
|
|
549
|
-
}
|
|
550
|
-
|
|
551
|
-
return getRecordsForRange;
|
|
552
|
-
}()
|
|
553
|
-
}, {
|
|
554
|
-
key: "streamRecordsForRange",
|
|
555
|
-
value: function streamRecordsForRange(chr, min, max) {
|
|
556
|
-
var _this = this;
|
|
557
|
-
|
|
558
|
-
var opts = arguments.length > 3 && arguments[3] !== undefined ? arguments[3] : {
|
|
559
|
-
viewAsPairs: false,
|
|
560
|
-
pairAcrossChr: false,
|
|
561
|
-
maxInsertSize: 200000
|
|
562
|
-
};
|
|
563
|
-
return (0, _wrapAsyncGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee5() {
|
|
564
|
-
var _context7;
|
|
565
|
-
|
|
566
|
-
var chrId, chunks, i, size, _context6, totalSize, _context8;
|
|
567
|
-
|
|
568
|
-
return _regenerator.default.wrap(function _callee5$(_context9) {
|
|
569
|
-
while (1) {
|
|
570
|
-
switch (_context9.prev = _context9.next) {
|
|
571
|
-
case 0:
|
|
572
|
-
// todo regularize refseq names
|
|
573
|
-
opts.viewAsPairs = opts.viewAsPairs || false;
|
|
574
|
-
opts.pairAcrossChr = opts.pairAcrossChr || false;
|
|
575
|
-
opts.maxInsertSize = opts.maxInsertSize !== undefined ? opts.maxInsertSize : 200000;
|
|
576
|
-
chrId = _this.chrToIndex && _this.chrToIndex[chr];
|
|
577
|
-
|
|
578
|
-
if (chrId >= 0) {
|
|
579
|
-
_context9.next = 8;
|
|
580
|
-
break;
|
|
581
|
-
}
|
|
582
|
-
|
|
583
|
-
chunks = [];
|
|
584
|
-
_context9.next = 13;
|
|
585
|
-
break;
|
|
586
|
-
|
|
587
|
-
case 8:
|
|
588
|
-
_context9.next = 10;
|
|
589
|
-
return (0, _awaitAsyncGenerator2.default)(_this.index.blocksForRange(chrId, min - 1, max, opts));
|
|
590
|
-
|
|
591
|
-
case 10:
|
|
592
|
-
chunks = _context9.sent;
|
|
593
|
-
|
|
594
|
-
if (chunks) {
|
|
595
|
-
_context9.next = 13;
|
|
596
|
-
break;
|
|
597
|
-
}
|
|
598
|
-
|
|
599
|
-
throw new Error('Error in index fetch');
|
|
600
|
-
|
|
601
|
-
case 13:
|
|
602
|
-
i = 0;
|
|
603
|
-
|
|
604
|
-
case 14:
|
|
605
|
-
if (!(i < chunks.length)) {
|
|
606
|
-
_context9.next = 23;
|
|
607
|
-
break;
|
|
608
|
-
}
|
|
609
|
-
|
|
610
|
-
_context9.next = 17;
|
|
611
|
-
return (0, _awaitAsyncGenerator2.default)((0, _util.abortBreakPoint)(opts.signal));
|
|
612
|
-
|
|
613
|
-
case 17:
|
|
614
|
-
size = chunks[i].fetchedSize();
|
|
615
|
-
|
|
616
|
-
if (!(size > _this.chunkSizeLimit)) {
|
|
617
|
-
_context9.next = 20;
|
|
618
|
-
break;
|
|
619
|
-
}
|
|
620
|
-
|
|
621
|
-
throw new Error((0, _concat.default)(_context6 = "Too many BAM features. BAM chunk size ".concat(size, " bytes exceeds chunkSizeLimit of ")).call(_context6, _this.chunkSizeLimit));
|
|
622
|
-
|
|
623
|
-
case 20:
|
|
624
|
-
i += 1;
|
|
625
|
-
_context9.next = 14;
|
|
626
|
-
break;
|
|
627
|
-
|
|
628
|
-
case 23:
|
|
629
|
-
totalSize = (0, _reduce.default)(_context7 = (0, _map.default)(chunks).call(chunks, function (s) {
|
|
630
|
-
return s.fetchedSize();
|
|
631
|
-
})).call(_context7, function (a, b) {
|
|
632
|
-
return a + b;
|
|
633
|
-
}, 0);
|
|
634
|
-
|
|
635
|
-
if (!(totalSize > _this.fetchSizeLimit)) {
|
|
636
|
-
_context9.next = 26;
|
|
637
|
-
break;
|
|
638
|
-
}
|
|
639
|
-
|
|
640
|
-
throw new Error((0, _concat.default)(_context8 = "data size of ".concat(totalSize.toLocaleString(), " bytes exceeded fetch size limit of ")).call(_context8, _this.fetchSizeLimit.toLocaleString(), " bytes"));
|
|
641
|
-
|
|
642
|
-
case 26:
|
|
643
|
-
return _context9.delegateYield((0, _asyncGeneratorDelegate2.default)((0, _asyncIterator2.default)(_this._fetchChunkFeatures(chunks, chrId, min, max, opts)), _awaitAsyncGenerator2.default), "t0", 27);
|
|
644
|
-
|
|
645
|
-
case 27:
|
|
646
|
-
case "end":
|
|
647
|
-
return _context9.stop();
|
|
648
|
-
}
|
|
649
|
-
}
|
|
650
|
-
}, _callee5);
|
|
651
|
-
}))();
|
|
33
|
+
op = body.call(thisArg, _);
|
|
34
|
+
} catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
|
|
35
|
+
if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
|
|
36
|
+
}
|
|
37
|
+
};
|
|
38
|
+
var __asyncValues = (this && this.__asyncValues) || function (o) {
|
|
39
|
+
if (!Symbol.asyncIterator) throw new TypeError("Symbol.asyncIterator is not defined.");
|
|
40
|
+
var m = o[Symbol.asyncIterator], i;
|
|
41
|
+
return m ? m.call(o) : (o = typeof __values === "function" ? __values(o) : o[Symbol.iterator](), i = {}, verb("next"), verb("throw"), verb("return"), i[Symbol.asyncIterator] = function () { return this; }, i);
|
|
42
|
+
function verb(n) { i[n] = o[n] && function (v) { return new Promise(function (resolve, reject) { v = o[n](v), settle(resolve, reject, v.done, v.value); }); }; }
|
|
43
|
+
function settle(resolve, reject, d, v) { Promise.resolve(v).then(function(v) { resolve({ value: v, done: d }); }, reject); }
|
|
44
|
+
};
|
|
45
|
+
var __await = (this && this.__await) || function (v) { return this instanceof __await ? (this.v = v, this) : new __await(v); }
|
|
46
|
+
var __asyncDelegator = (this && this.__asyncDelegator) || function (o) {
|
|
47
|
+
var i, p;
|
|
48
|
+
return i = {}, verb("next"), verb("throw", function (e) { throw e; }), verb("return"), i[Symbol.iterator] = function () { return this; }, i;
|
|
49
|
+
function verb(n, f) { i[n] = o[n] ? function (v) { return (p = !p) ? { value: __await(o[n](v)), done: n === "return" } : f ? f(v) : v; } : f; }
|
|
50
|
+
};
|
|
51
|
+
var __asyncGenerator = (this && this.__asyncGenerator) || function (thisArg, _arguments, generator) {
|
|
52
|
+
if (!Symbol.asyncIterator) throw new TypeError("Symbol.asyncIterator is not defined.");
|
|
53
|
+
var g = generator.apply(thisArg, _arguments || []), i, q = [];
|
|
54
|
+
return i = {}, verb("next"), verb("throw"), verb("return"), i[Symbol.asyncIterator] = function () { return this; }, i;
|
|
55
|
+
function verb(n) { if (g[n]) i[n] = function (v) { return new Promise(function (a, b) { q.push([n, v, a, b]) > 1 || resume(n, v); }); }; }
|
|
56
|
+
function resume(n, v) { try { step(g[n](v)); } catch (e) { settle(q[0][3], e); } }
|
|
57
|
+
function step(r) { r.value instanceof __await ? Promise.resolve(r.value.v).then(fulfill, reject) : settle(q[0][2], r); }
|
|
58
|
+
function fulfill(value) { resume("next", value); }
|
|
59
|
+
function reject(value) { resume("throw", value); }
|
|
60
|
+
function settle(f, v) { if (f(v), q.shift(), q.length) resume(q[0][0], q[0][1]); }
|
|
61
|
+
};
|
|
62
|
+
var __values = (this && this.__values) || function(o) {
|
|
63
|
+
var s = typeof Symbol === "function" && Symbol.iterator, m = s && o[s], i = 0;
|
|
64
|
+
if (m) return m.call(o);
|
|
65
|
+
if (o && typeof o.length === "number") return {
|
|
66
|
+
next: function () {
|
|
67
|
+
if (o && i >= o.length) o = void 0;
|
|
68
|
+
return { value: o && o[i++], done: !o };
|
|
69
|
+
}
|
|
70
|
+
};
|
|
71
|
+
throw new TypeError(s ? "Object is not iterable." : "Symbol.iterator is not defined.");
|
|
72
|
+
};
|
|
73
|
+
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
74
|
+
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
75
|
+
};
|
|
76
|
+
Object.defineProperty(exports, "__esModule", { value: true });
|
|
77
|
+
exports.BAM_MAGIC = void 0;
|
|
78
|
+
var bai_1 = __importDefault(require("./bai"));
|
|
79
|
+
var csi_1 = __importDefault(require("./csi"));
|
|
80
|
+
var buffer_crc32_1 = __importDefault(require("buffer-crc32"));
|
|
81
|
+
var bgzf_filehandle_1 = require("@gmod/bgzf-filehandle");
|
|
82
|
+
var object_entries_ponyfill_1 = __importDefault(require("object.entries-ponyfill"));
|
|
83
|
+
var generic_filehandle_1 = require("generic-filehandle");
|
|
84
|
+
var record_1 = __importDefault(require("./record"));
|
|
85
|
+
var sam_1 = require("./sam");
|
|
86
|
+
var util_1 = require("./util");
|
|
87
|
+
exports.BAM_MAGIC = 21840194;
|
|
88
|
+
var blockLen = 1 << 16;
|
|
89
|
+
var BamFile = /** @class */ (function () {
|
|
90
|
+
/**
|
|
91
|
+
* @param {object} args
|
|
92
|
+
* @param {string} [args.bamPath]
|
|
93
|
+
* @param {FileHandle} [args.bamFilehandle]
|
|
94
|
+
* @param {string} [args.baiPath]
|
|
95
|
+
* @param {FileHandle} [args.baiFilehandle]
|
|
96
|
+
*/
|
|
97
|
+
function BamFile(_a) {
|
|
98
|
+
var bamFilehandle = _a.bamFilehandle, bamPath = _a.bamPath, bamUrl = _a.bamUrl, baiPath = _a.baiPath, baiFilehandle = _a.baiFilehandle, baiUrl = _a.baiUrl, csiPath = _a.csiPath, csiFilehandle = _a.csiFilehandle, csiUrl = _a.csiUrl, fetchSizeLimit = _a.fetchSizeLimit, chunkSizeLimit = _a.chunkSizeLimit, _b = _a.yieldThreadTime, yieldThreadTime = _b === void 0 ? 100 : _b, _c = _a.renameRefSeqs, renameRefSeqs = _c === void 0 ? function (n) { return n; } : _c;
|
|
99
|
+
this.renameRefSeq = renameRefSeqs;
|
|
100
|
+
if (bamFilehandle) {
|
|
101
|
+
this.bam = bamFilehandle;
|
|
102
|
+
}
|
|
103
|
+
else if (bamPath) {
|
|
104
|
+
this.bam = new generic_filehandle_1.LocalFile(bamPath);
|
|
105
|
+
}
|
|
106
|
+
else if (bamUrl) {
|
|
107
|
+
this.bam = new generic_filehandle_1.RemoteFile(bamUrl);
|
|
108
|
+
}
|
|
109
|
+
else {
|
|
110
|
+
throw new Error('unable to initialize bam');
|
|
111
|
+
}
|
|
112
|
+
if (csiFilehandle) {
|
|
113
|
+
this.index = new csi_1.default({ filehandle: csiFilehandle });
|
|
114
|
+
}
|
|
115
|
+
else if (csiPath) {
|
|
116
|
+
this.index = new csi_1.default({ filehandle: new generic_filehandle_1.LocalFile(csiPath) });
|
|
117
|
+
}
|
|
118
|
+
else if (csiUrl) {
|
|
119
|
+
this.index = new csi_1.default({ filehandle: new generic_filehandle_1.RemoteFile(csiUrl) });
|
|
120
|
+
}
|
|
121
|
+
else if (baiFilehandle) {
|
|
122
|
+
this.index = new bai_1.default({ filehandle: baiFilehandle });
|
|
123
|
+
}
|
|
124
|
+
else if (baiPath) {
|
|
125
|
+
this.index = new bai_1.default({ filehandle: new generic_filehandle_1.LocalFile(baiPath) });
|
|
126
|
+
}
|
|
127
|
+
else if (baiUrl) {
|
|
128
|
+
this.index = new bai_1.default({ filehandle: new generic_filehandle_1.RemoteFile(baiUrl) });
|
|
129
|
+
}
|
|
130
|
+
else if (bamPath) {
|
|
131
|
+
this.index = new bai_1.default({ filehandle: new generic_filehandle_1.LocalFile("".concat(bamPath, ".bai")) });
|
|
132
|
+
}
|
|
133
|
+
else if (bamUrl) {
|
|
134
|
+
this.index = new bai_1.default({ filehandle: new generic_filehandle_1.RemoteFile("".concat(bamUrl, ".bai")) });
|
|
135
|
+
}
|
|
136
|
+
else {
|
|
137
|
+
throw new Error('unable to infer index format');
|
|
138
|
+
}
|
|
139
|
+
this.fetchSizeLimit = fetchSizeLimit || 500000000; // 500MB
|
|
140
|
+
this.chunkSizeLimit = chunkSizeLimit || 300000000; // 300MB
|
|
141
|
+
this.yieldThreadTime = yieldThreadTime;
|
|
652
142
|
}
|
|
653
|
-
|
|
654
|
-
|
|
655
|
-
|
|
656
|
-
|
|
657
|
-
|
|
658
|
-
|
|
659
|
-
|
|
660
|
-
|
|
661
|
-
|
|
662
|
-
|
|
663
|
-
|
|
664
|
-
|
|
665
|
-
|
|
666
|
-
|
|
667
|
-
|
|
668
|
-
|
|
669
|
-
|
|
670
|
-
|
|
671
|
-
|
|
672
|
-
|
|
143
|
+
BamFile.prototype.getHeader = function (origOpts) {
|
|
144
|
+
if (origOpts === void 0) { origOpts = {}; }
|
|
145
|
+
return __awaiter(this, void 0, void 0, function () {
|
|
146
|
+
var opts, indexData, ret, buffer, res, bytesRead, uncba, headLen, _a, chrToIndex, indexToChr;
|
|
147
|
+
return __generator(this, function (_b) {
|
|
148
|
+
switch (_b.label) {
|
|
149
|
+
case 0:
|
|
150
|
+
opts = (0, util_1.makeOpts)(origOpts);
|
|
151
|
+
return [4 /*yield*/, this.index.parse(opts)];
|
|
152
|
+
case 1:
|
|
153
|
+
indexData = _b.sent();
|
|
154
|
+
ret = indexData.firstDataLine
|
|
155
|
+
? indexData.firstDataLine.blockPosition + 65535
|
|
156
|
+
: undefined;
|
|
157
|
+
if (!ret) return [3 /*break*/, 3];
|
|
158
|
+
return [4 /*yield*/, this.bam.read(Buffer.alloc(ret + blockLen), 0, ret + blockLen, 0, opts)];
|
|
159
|
+
case 2:
|
|
160
|
+
res = _b.sent();
|
|
161
|
+
bytesRead = res.bytesRead;
|
|
162
|
+
(buffer = res.buffer);
|
|
163
|
+
if (!bytesRead) {
|
|
164
|
+
throw new Error('Error reading header');
|
|
165
|
+
}
|
|
166
|
+
if (bytesRead < ret) {
|
|
167
|
+
buffer = buffer.slice(0, bytesRead);
|
|
168
|
+
}
|
|
169
|
+
else {
|
|
170
|
+
buffer = buffer.slice(0, ret);
|
|
171
|
+
}
|
|
172
|
+
return [3 /*break*/, 5];
|
|
173
|
+
case 3: return [4 /*yield*/, this.bam.readFile(opts)];
|
|
174
|
+
case 4:
|
|
175
|
+
buffer = (_b.sent());
|
|
176
|
+
_b.label = 5;
|
|
177
|
+
case 5: return [4 /*yield*/, (0, bgzf_filehandle_1.unzip)(buffer)];
|
|
178
|
+
case 6:
|
|
179
|
+
uncba = _b.sent();
|
|
180
|
+
if (uncba.readInt32LE(0) !== exports.BAM_MAGIC) {
|
|
181
|
+
throw new Error('Not a BAM file');
|
|
182
|
+
}
|
|
183
|
+
headLen = uncba.readInt32LE(4);
|
|
184
|
+
this.header = uncba.toString('utf8', 8, 8 + headLen);
|
|
185
|
+
return [4 /*yield*/, this._readRefSeqs(headLen + 8, 65535, opts)];
|
|
186
|
+
case 7:
|
|
187
|
+
_a = _b.sent(), chrToIndex = _a.chrToIndex, indexToChr = _a.indexToChr;
|
|
188
|
+
this.chrToIndex = chrToIndex;
|
|
189
|
+
this.indexToChr = indexToChr;
|
|
190
|
+
return [2 /*return*/, (0, sam_1.parseHeaderText)(this.header)];
|
|
673
191
|
}
|
|
674
|
-
|
|
675
|
-
|
|
676
|
-
|
|
677
|
-
|
|
678
|
-
|
|
679
|
-
|
|
680
|
-
|
|
681
|
-
|
|
682
|
-
|
|
683
|
-
|
|
684
|
-
|
|
685
|
-
|
|
686
|
-
dpositions = _yield$_awaitAsyncGen.dpositions;
|
|
687
|
-
chunk = _yield$_awaitAsyncGen.chunk;
|
|
688
|
-
promise = _this2.readBamFeatures(data, cpositions, dpositions, chunk).then(function (records) {
|
|
689
|
-
var recs = [];
|
|
690
|
-
|
|
691
|
-
for (var _i = 0; _i < records.length; _i += 1) {
|
|
692
|
-
var feature = records[_i];
|
|
693
|
-
|
|
694
|
-
if (feature.seq_id() === chrId) {
|
|
695
|
-
if (feature.get('start') >= max) {
|
|
696
|
-
// past end of range, can stop iterating
|
|
697
|
-
done = true;
|
|
698
|
-
break;
|
|
699
|
-
} else if (feature.get('end') >= min) {
|
|
700
|
-
// must be in range
|
|
701
|
-
recs.push(feature);
|
|
702
|
-
}
|
|
703
|
-
}
|
|
704
|
-
}
|
|
705
|
-
|
|
706
|
-
return recs;
|
|
707
|
-
});
|
|
708
|
-
featPromises.push(promise);
|
|
709
|
-
_context10.next = 16;
|
|
710
|
-
return (0, _awaitAsyncGenerator2.default)(promise);
|
|
711
|
-
|
|
712
|
-
case 16:
|
|
713
|
-
if (!done) {
|
|
714
|
-
_context10.next = 18;
|
|
715
|
-
break;
|
|
192
|
+
});
|
|
193
|
+
});
|
|
194
|
+
};
|
|
195
|
+
BamFile.prototype.getHeaderText = function (opts) {
|
|
196
|
+
if (opts === void 0) { opts = {}; }
|
|
197
|
+
return __awaiter(this, void 0, void 0, function () {
|
|
198
|
+
return __generator(this, function (_a) {
|
|
199
|
+
switch (_a.label) {
|
|
200
|
+
case 0: return [4 /*yield*/, this.getHeader(opts)];
|
|
201
|
+
case 1:
|
|
202
|
+
_a.sent();
|
|
203
|
+
return [2 /*return*/, this.header];
|
|
716
204
|
}
|
|
717
|
-
|
|
718
|
-
|
|
719
|
-
|
|
720
|
-
|
|
721
|
-
|
|
722
|
-
|
|
723
|
-
|
|
724
|
-
|
|
725
|
-
|
|
726
|
-
|
|
727
|
-
|
|
728
|
-
|
|
729
|
-
|
|
730
|
-
|
|
731
|
-
|
|
732
|
-
|
|
205
|
+
});
|
|
206
|
+
});
|
|
207
|
+
};
|
|
208
|
+
// the full length of the refseq block is not given in advance so this grabs a chunk and
|
|
209
|
+
// doubles it if all refseqs haven't been processed
|
|
210
|
+
BamFile.prototype._readRefSeqs = function (start, refSeqBytes, opts) {
|
|
211
|
+
if (opts === void 0) { opts = {}; }
|
|
212
|
+
return __awaiter(this, void 0, void 0, function () {
|
|
213
|
+
var res, bytesRead, buffer, uncba, nRef, p, chrToIndex, indexToChr, i, lName, refName, lRef;
|
|
214
|
+
return __generator(this, function (_a) {
|
|
215
|
+
switch (_a.label) {
|
|
216
|
+
case 0:
|
|
217
|
+
if (start > refSeqBytes) {
|
|
218
|
+
return [2 /*return*/, this._readRefSeqs(start, refSeqBytes * 2, opts)];
|
|
219
|
+
}
|
|
220
|
+
return [4 /*yield*/, this.bam.read(Buffer.alloc(refSeqBytes + blockLen), 0, refSeqBytes, 0, opts)];
|
|
221
|
+
case 1:
|
|
222
|
+
res = _a.sent();
|
|
223
|
+
bytesRead = res.bytesRead;
|
|
224
|
+
buffer = res.buffer;
|
|
225
|
+
if (!bytesRead) {
|
|
226
|
+
throw new Error('Error reading refseqs from header');
|
|
227
|
+
}
|
|
228
|
+
if (bytesRead < refSeqBytes) {
|
|
229
|
+
buffer = buffer.slice(0, bytesRead);
|
|
230
|
+
}
|
|
231
|
+
else {
|
|
232
|
+
buffer = buffer.slice(0, refSeqBytes);
|
|
233
|
+
}
|
|
234
|
+
return [4 /*yield*/, (0, bgzf_filehandle_1.unzip)(buffer)];
|
|
235
|
+
case 2:
|
|
236
|
+
uncba = _a.sent();
|
|
237
|
+
nRef = uncba.readInt32LE(start);
|
|
238
|
+
p = start + 4;
|
|
239
|
+
chrToIndex = {};
|
|
240
|
+
indexToChr = [];
|
|
241
|
+
i = 0;
|
|
242
|
+
_a.label = 3;
|
|
243
|
+
case 3:
|
|
244
|
+
if (!(i < nRef)) return [3 /*break*/, 6];
|
|
245
|
+
return [4 /*yield*/, (0, util_1.abortBreakPoint)(opts.signal)];
|
|
246
|
+
case 4:
|
|
247
|
+
_a.sent();
|
|
248
|
+
lName = uncba.readInt32LE(p);
|
|
249
|
+
refName = this.renameRefSeq(uncba.toString('utf8', p + 4, p + 4 + lName - 1));
|
|
250
|
+
lRef = uncba.readInt32LE(p + lName + 4);
|
|
251
|
+
chrToIndex[refName] = i;
|
|
252
|
+
indexToChr.push({ refName: refName, length: lRef });
|
|
253
|
+
p = p + 8 + lName;
|
|
254
|
+
if (p > uncba.length) {
|
|
255
|
+
console.warn("BAM header is very big. Re-fetching ".concat(refSeqBytes, " bytes."));
|
|
256
|
+
return [2 /*return*/, this._readRefSeqs(start, refSeqBytes * 2, opts)];
|
|
257
|
+
}
|
|
258
|
+
_a.label = 5;
|
|
259
|
+
case 5:
|
|
260
|
+
i += 1;
|
|
261
|
+
return [3 /*break*/, 3];
|
|
262
|
+
case 6: return [2 /*return*/, { chrToIndex: chrToIndex, indexToChr: indexToChr }];
|
|
733
263
|
}
|
|
734
|
-
|
|
735
|
-
|
|
736
|
-
|
|
737
|
-
|
|
738
|
-
|
|
739
|
-
|
|
740
|
-
|
|
741
|
-
|
|
742
|
-
|
|
743
|
-
|
|
744
|
-
|
|
745
|
-
|
|
746
|
-
|
|
747
|
-
|
|
748
|
-
|
|
264
|
+
});
|
|
265
|
+
});
|
|
266
|
+
};
|
|
267
|
+
BamFile.prototype.getRecordsForRange = function (chr, min, max, opts) {
|
|
268
|
+
var e_1, _a;
|
|
269
|
+
if (opts === void 0) { opts = {
|
|
270
|
+
viewAsPairs: false,
|
|
271
|
+
pairAcrossChr: false,
|
|
272
|
+
maxInsertSize: 200000,
|
|
273
|
+
}; }
|
|
274
|
+
return __awaiter(this, void 0, void 0, function () {
|
|
275
|
+
var records, _b, _c, chunk, e_1_1;
|
|
276
|
+
return __generator(this, function (_d) {
|
|
277
|
+
switch (_d.label) {
|
|
278
|
+
case 0:
|
|
279
|
+
records = [];
|
|
280
|
+
_d.label = 1;
|
|
281
|
+
case 1:
|
|
282
|
+
_d.trys.push([1, 6, 7, 12]);
|
|
283
|
+
_b = __asyncValues(this.streamRecordsForRange(chr, min, max, opts));
|
|
284
|
+
_d.label = 2;
|
|
285
|
+
case 2: return [4 /*yield*/, _b.next()];
|
|
286
|
+
case 3:
|
|
287
|
+
if (!(_c = _d.sent(), !_c.done)) return [3 /*break*/, 5];
|
|
288
|
+
chunk = _c.value;
|
|
289
|
+
records = records.concat(chunk);
|
|
290
|
+
_d.label = 4;
|
|
291
|
+
case 4: return [3 /*break*/, 2];
|
|
292
|
+
case 5: return [3 /*break*/, 12];
|
|
293
|
+
case 6:
|
|
294
|
+
e_1_1 = _d.sent();
|
|
295
|
+
e_1 = { error: e_1_1 };
|
|
296
|
+
return [3 /*break*/, 12];
|
|
297
|
+
case 7:
|
|
298
|
+
_d.trys.push([7, , 10, 11]);
|
|
299
|
+
if (!(_c && !_c.done && (_a = _b.return))) return [3 /*break*/, 9];
|
|
300
|
+
return [4 /*yield*/, _a.call(_b)];
|
|
301
|
+
case 8:
|
|
302
|
+
_d.sent();
|
|
303
|
+
_d.label = 9;
|
|
304
|
+
case 9: return [3 /*break*/, 11];
|
|
305
|
+
case 10:
|
|
306
|
+
if (e_1) throw e_1.error;
|
|
307
|
+
return [7 /*endfinally*/];
|
|
308
|
+
case 11: return [7 /*endfinally*/];
|
|
309
|
+
case 12: return [2 /*return*/, records];
|
|
749
310
|
}
|
|
750
|
-
|
|
751
|
-
|
|
752
|
-
|
|
753
|
-
|
|
754
|
-
|
|
755
|
-
|
|
756
|
-
|
|
757
|
-
|
|
758
|
-
|
|
759
|
-
|
|
760
|
-
|
|
761
|
-
|
|
762
|
-
|
|
763
|
-
|
|
764
|
-
|
|
765
|
-
|
|
766
|
-
|
|
767
|
-
|
|
768
|
-
|
|
769
|
-
|
|
770
|
-
|
|
771
|
-
|
|
772
|
-
|
|
773
|
-
|
|
774
|
-
|
|
775
|
-
|
|
776
|
-
|
|
777
|
-
|
|
778
|
-
_context18.next = 4;
|
|
779
|
-
return _promise.default.all((0, _map.default)(featPromises).call(featPromises, /*#__PURE__*/function () {
|
|
780
|
-
var _ref2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee7(f) {
|
|
781
|
-
var _context11;
|
|
782
|
-
|
|
783
|
-
var ret, readNames, i, name, id;
|
|
784
|
-
return _regenerator.default.wrap(function _callee7$(_context12) {
|
|
785
|
-
while (1) {
|
|
786
|
-
switch (_context12.prev = _context12.next) {
|
|
787
|
-
case 0:
|
|
788
|
-
_context12.next = 2;
|
|
789
|
-
return f;
|
|
790
|
-
|
|
791
|
-
case 2:
|
|
792
|
-
ret = _context12.sent;
|
|
793
|
-
readNames = {};
|
|
794
|
-
|
|
795
|
-
for (i = 0; i < ret.length; i++) {
|
|
796
|
-
name = ret[i].name();
|
|
797
|
-
id = ret[i].id();
|
|
798
|
-
|
|
799
|
-
if (!readNames[name]) {
|
|
800
|
-
readNames[name] = 0;
|
|
801
|
-
}
|
|
802
|
-
|
|
803
|
-
readNames[name]++;
|
|
804
|
-
readIds[id] = 1;
|
|
805
|
-
}
|
|
806
|
-
|
|
807
|
-
(0, _forEach.default)(_context11 = (0, _object.default)(readNames)).call(_context11, function (_ref3) {
|
|
808
|
-
var _ref4 = (0, _slicedToArray2.default)(_ref3, 2),
|
|
809
|
-
k = _ref4[0],
|
|
810
|
-
v = _ref4[1];
|
|
811
|
-
|
|
812
|
-
if (v === 1) {
|
|
813
|
-
unmatedPairs[k] = true;
|
|
814
|
-
}
|
|
815
|
-
});
|
|
816
|
-
|
|
817
|
-
case 6:
|
|
818
|
-
case "end":
|
|
819
|
-
return _context12.stop();
|
|
311
|
+
});
|
|
312
|
+
});
|
|
313
|
+
};
|
|
314
|
+
BamFile.prototype.streamRecordsForRange = function (chr, min, max, opts) {
|
|
315
|
+
if (opts === void 0) { opts = {
|
|
316
|
+
viewAsPairs: false,
|
|
317
|
+
pairAcrossChr: false,
|
|
318
|
+
maxInsertSize: 200000,
|
|
319
|
+
}; }
|
|
320
|
+
return __asyncGenerator(this, arguments, function streamRecordsForRange_1() {
|
|
321
|
+
var chrId, chunks, i, size, totalSize;
|
|
322
|
+
return __generator(this, function (_a) {
|
|
323
|
+
switch (_a.label) {
|
|
324
|
+
case 0:
|
|
325
|
+
// todo regularize refseq names
|
|
326
|
+
opts.viewAsPairs = opts.viewAsPairs || false;
|
|
327
|
+
opts.pairAcrossChr = opts.pairAcrossChr || false;
|
|
328
|
+
opts.maxInsertSize =
|
|
329
|
+
opts.maxInsertSize !== undefined ? opts.maxInsertSize : 200000;
|
|
330
|
+
chrId = this.chrToIndex && this.chrToIndex[chr];
|
|
331
|
+
if (!!(chrId >= 0)) return [3 /*break*/, 1];
|
|
332
|
+
chunks = [];
|
|
333
|
+
return [3 /*break*/, 3];
|
|
334
|
+
case 1: return [4 /*yield*/, __await(this.index.blocksForRange(chrId, min - 1, max, opts))];
|
|
335
|
+
case 2:
|
|
336
|
+
chunks = _a.sent();
|
|
337
|
+
if (!chunks) {
|
|
338
|
+
throw new Error('Error in index fetch');
|
|
820
339
|
}
|
|
821
|
-
|
|
822
|
-
|
|
823
|
-
|
|
824
|
-
|
|
825
|
-
|
|
826
|
-
|
|
827
|
-
|
|
828
|
-
|
|
829
|
-
|
|
830
|
-
|
|
831
|
-
|
|
832
|
-
|
|
833
|
-
return _promise.default.all((0, _map.default)(featPromises).call(featPromises, /*#__PURE__*/function () {
|
|
834
|
-
var _ref5 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee8(f) {
|
|
835
|
-
var ret, i, name;
|
|
836
|
-
return _regenerator.default.wrap(function _callee8$(_context13) {
|
|
837
|
-
while (1) {
|
|
838
|
-
switch (_context13.prev = _context13.next) {
|
|
839
|
-
case 0:
|
|
840
|
-
_context13.next = 2;
|
|
841
|
-
return f;
|
|
842
|
-
|
|
843
|
-
case 2:
|
|
844
|
-
ret = _context13.sent;
|
|
845
|
-
|
|
846
|
-
for (i = 0; i < ret.length; i++) {
|
|
847
|
-
name = ret[i].name();
|
|
848
|
-
|
|
849
|
-
if (unmatedPairs[name] && (opts.pairAcrossChr || ret[i]._next_refid() === chrId && Math.abs(ret[i].get('start') - ret[i]._next_pos()) < (opts.maxInsertSize || 200000))) {
|
|
850
|
-
matePromises.push(_this3.index.blocksForRange(ret[i]._next_refid(), ret[i]._next_pos(), ret[i]._next_pos() + 1, opts));
|
|
851
|
-
}
|
|
852
|
-
}
|
|
853
|
-
|
|
854
|
-
case 4:
|
|
855
|
-
case "end":
|
|
856
|
-
return _context13.stop();
|
|
340
|
+
_a.label = 3;
|
|
341
|
+
case 3:
|
|
342
|
+
i = 0;
|
|
343
|
+
_a.label = 4;
|
|
344
|
+
case 4:
|
|
345
|
+
if (!(i < chunks.length)) return [3 /*break*/, 7];
|
|
346
|
+
return [4 /*yield*/, __await((0, util_1.abortBreakPoint)(opts.signal))];
|
|
347
|
+
case 5:
|
|
348
|
+
_a.sent();
|
|
349
|
+
size = chunks[i].fetchedSize();
|
|
350
|
+
if (size > this.chunkSizeLimit) {
|
|
351
|
+
throw new Error("Too many BAM features. BAM chunk size ".concat(size, " bytes exceeds chunkSizeLimit of ").concat(this.chunkSizeLimit));
|
|
857
352
|
}
|
|
858
|
-
|
|
859
|
-
|
|
860
|
-
|
|
861
|
-
|
|
862
|
-
|
|
863
|
-
|
|
864
|
-
|
|
865
|
-
|
|
866
|
-
|
|
867
|
-
|
|
868
|
-
|
|
869
|
-
|
|
870
|
-
|
|
871
|
-
|
|
872
|
-
|
|
873
|
-
|
|
874
|
-
|
|
875
|
-
for (i = 0; i < mateBlocks.length; i++) {
|
|
876
|
-
mateChunks = (0, _concat.default)(mateChunks).call(mateChunks, mateBlocks[i]);
|
|
877
|
-
} // filter out duplicate chunks (the blocks are lists of chunks, blocks are concatenated, then filter dup chunks)
|
|
878
|
-
|
|
879
|
-
|
|
880
|
-
mateChunks = (0, _filter.default)(_context14 = (0, _sort.default)(mateChunks).call(mateChunks)).call(_context14, function (item, pos, ary) {
|
|
881
|
-
return !pos || item.toString() !== ary[pos - 1].toString();
|
|
882
|
-
});
|
|
883
|
-
mateTotalSize = (0, _reduce.default)(_context15 = (0, _map.default)(mateChunks).call(mateChunks, function (s) {
|
|
884
|
-
return s.fetchedSize();
|
|
885
|
-
})).call(_context15, function (a, b) {
|
|
886
|
-
return a + b;
|
|
887
|
-
}, 0);
|
|
888
|
-
|
|
889
|
-
if (!(mateTotalSize > this.fetchSizeLimit)) {
|
|
890
|
-
_context18.next = 16;
|
|
891
|
-
break;
|
|
353
|
+
_a.label = 6;
|
|
354
|
+
case 6:
|
|
355
|
+
i += 1;
|
|
356
|
+
return [3 /*break*/, 4];
|
|
357
|
+
case 7:
|
|
358
|
+
totalSize = chunks
|
|
359
|
+
.map(function (s) { return s.fetchedSize(); })
|
|
360
|
+
.reduce(function (a, b) { return a + b; }, 0);
|
|
361
|
+
if (totalSize > this.fetchSizeLimit) {
|
|
362
|
+
throw new Error("data size of ".concat(totalSize.toLocaleString(), " bytes exceeded fetch size limit of ").concat(this.fetchSizeLimit.toLocaleString(), " bytes"));
|
|
363
|
+
}
|
|
364
|
+
return [5 /*yield**/, __values(__asyncDelegator(__asyncValues(this._fetchChunkFeatures(chunks, chrId, min, max, opts))))];
|
|
365
|
+
case 8: return [4 /*yield*/, __await.apply(void 0, [_a.sent()])];
|
|
366
|
+
case 9:
|
|
367
|
+
_a.sent();
|
|
368
|
+
return [2 /*return*/];
|
|
892
369
|
}
|
|
893
|
-
|
|
894
|
-
|
|
895
|
-
|
|
896
|
-
|
|
897
|
-
|
|
898
|
-
|
|
899
|
-
|
|
900
|
-
|
|
901
|
-
|
|
902
|
-
|
|
903
|
-
|
|
904
|
-
|
|
905
|
-
|
|
906
|
-
|
|
907
|
-
|
|
908
|
-
|
|
909
|
-
|
|
910
|
-
|
|
911
|
-
|
|
912
|
-
|
|
913
|
-
|
|
914
|
-
|
|
915
|
-
|
|
916
|
-
|
|
917
|
-
|
|
918
|
-
|
|
919
|
-
|
|
920
|
-
|
|
921
|
-
|
|
922
|
-
|
|
923
|
-
|
|
924
|
-
|
|
925
|
-
|
|
926
|
-
|
|
927
|
-
|
|
928
|
-
|
|
929
|
-
}
|
|
370
|
+
});
|
|
371
|
+
});
|
|
372
|
+
};
|
|
373
|
+
BamFile.prototype._fetchChunkFeatures = function (chunks, chrId, min, max, opts) {
|
|
374
|
+
return __asyncGenerator(this, arguments, function _fetchChunkFeatures_1() {
|
|
375
|
+
var featPromises, done, i, _a, data, cpositions, dpositions, chunk, promise, i;
|
|
376
|
+
return __generator(this, function (_b) {
|
|
377
|
+
switch (_b.label) {
|
|
378
|
+
case 0:
|
|
379
|
+
featPromises = [];
|
|
380
|
+
done = false;
|
|
381
|
+
i = 0;
|
|
382
|
+
_b.label = 1;
|
|
383
|
+
case 1:
|
|
384
|
+
if (!(i < chunks.length)) return [3 /*break*/, 5];
|
|
385
|
+
return [4 /*yield*/, __await(this._readChunk({
|
|
386
|
+
chunk: chunks[i],
|
|
387
|
+
opts: opts,
|
|
388
|
+
}))];
|
|
389
|
+
case 2:
|
|
390
|
+
_a = _b.sent(), data = _a.data, cpositions = _a.cpositions, dpositions = _a.dpositions, chunk = _a.chunk;
|
|
391
|
+
promise = this.readBamFeatures(data, cpositions, dpositions, chunk).then(function (records) {
|
|
392
|
+
var recs = [];
|
|
393
|
+
for (var i_1 = 0; i_1 < records.length; i_1 += 1) {
|
|
394
|
+
var feature = records[i_1];
|
|
395
|
+
if (feature.seq_id() === chrId) {
|
|
396
|
+
if (feature.get('start') >= max) {
|
|
397
|
+
// past end of range, can stop iterating
|
|
398
|
+
done = true;
|
|
399
|
+
break;
|
|
400
|
+
}
|
|
401
|
+
else if (feature.get('end') >= min) {
|
|
402
|
+
// must be in range
|
|
403
|
+
recs.push(feature);
|
|
404
|
+
}
|
|
405
|
+
}
|
|
930
406
|
}
|
|
931
|
-
|
|
932
|
-
|
|
933
|
-
|
|
934
|
-
|
|
935
|
-
|
|
936
|
-
|
|
407
|
+
return recs;
|
|
408
|
+
});
|
|
409
|
+
featPromises.push(promise);
|
|
410
|
+
return [4 /*yield*/, __await(promise)];
|
|
411
|
+
case 3:
|
|
412
|
+
_b.sent();
|
|
413
|
+
if (done) {
|
|
414
|
+
return [3 /*break*/, 5];
|
|
937
415
|
}
|
|
938
|
-
|
|
939
|
-
|
|
940
|
-
|
|
941
|
-
|
|
942
|
-
|
|
943
|
-
|
|
944
|
-
|
|
945
|
-
|
|
946
|
-
|
|
947
|
-
|
|
948
|
-
|
|
949
|
-
|
|
950
|
-
|
|
951
|
-
|
|
952
|
-
|
|
953
|
-
|
|
954
|
-
|
|
955
|
-
|
|
956
|
-
|
|
957
|
-
|
|
958
|
-
|
|
959
|
-
|
|
960
|
-
|
|
961
|
-
|
|
962
|
-
|
|
963
|
-
|
|
964
|
-
|
|
965
|
-
}
|
|
966
|
-
}
|
|
967
|
-
}, _callee10, this);
|
|
968
|
-
}));
|
|
969
|
-
|
|
970
|
-
function fetchPairs(_x6, _x7, _x8) {
|
|
971
|
-
return _fetchPairs.apply(this, arguments);
|
|
972
|
-
}
|
|
973
|
-
|
|
974
|
-
return fetchPairs;
|
|
975
|
-
}()
|
|
976
|
-
}, {
|
|
977
|
-
key: "_readChunk",
|
|
978
|
-
value: function () {
|
|
979
|
-
var _readChunk2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee11(_ref7, abortSignal) {
|
|
980
|
-
var chunk, opts, c, bufsize, res, bytesRead, buffer, _yield$unzipChunkSlic, data, cpositions, dpositions;
|
|
981
|
-
|
|
982
|
-
return _regenerator.default.wrap(function _callee11$(_context19) {
|
|
983
|
-
while (1) {
|
|
984
|
-
switch (_context19.prev = _context19.next) {
|
|
985
|
-
case 0:
|
|
986
|
-
chunk = _ref7.chunk, opts = _ref7.opts;
|
|
987
|
-
c = chunk;
|
|
988
|
-
bufsize = c.fetchedSize();
|
|
989
|
-
_context19.next = 5;
|
|
990
|
-
return this.bam.read(Buffer.alloc(bufsize), 0, bufsize, c.minv.blockPosition, opts);
|
|
991
|
-
|
|
992
|
-
case 5:
|
|
993
|
-
res = _context19.sent;
|
|
994
|
-
bytesRead = res.bytesRead;
|
|
995
|
-
buffer = res.buffer;
|
|
996
|
-
(0, _util.checkAbortSignal)(abortSignal);
|
|
997
|
-
|
|
998
|
-
if (bytesRead) {
|
|
999
|
-
_context19.next = 11;
|
|
1000
|
-
break;
|
|
416
|
+
_b.label = 4;
|
|
417
|
+
case 4:
|
|
418
|
+
i++;
|
|
419
|
+
return [3 /*break*/, 1];
|
|
420
|
+
case 5:
|
|
421
|
+
(0, util_1.checkAbortSignal)(opts.signal);
|
|
422
|
+
i = 0;
|
|
423
|
+
_b.label = 6;
|
|
424
|
+
case 6:
|
|
425
|
+
if (!(i < featPromises.length)) return [3 /*break*/, 10];
|
|
426
|
+
return [4 /*yield*/, __await(featPromises[i])];
|
|
427
|
+
case 7: return [4 /*yield*/, _b.sent()];
|
|
428
|
+
case 8:
|
|
429
|
+
_b.sent();
|
|
430
|
+
_b.label = 9;
|
|
431
|
+
case 9:
|
|
432
|
+
i++;
|
|
433
|
+
return [3 /*break*/, 6];
|
|
434
|
+
case 10:
|
|
435
|
+
(0, util_1.checkAbortSignal)(opts.signal);
|
|
436
|
+
if (!opts.viewAsPairs) return [3 /*break*/, 13];
|
|
437
|
+
return [4 /*yield*/, __await(this.fetchPairs(chrId, featPromises, opts))];
|
|
438
|
+
case 11: return [4 /*yield*/, _b.sent()];
|
|
439
|
+
case 12:
|
|
440
|
+
_b.sent();
|
|
441
|
+
_b.label = 13;
|
|
442
|
+
case 13: return [2 /*return*/];
|
|
1001
443
|
}
|
|
1002
|
-
|
|
1003
|
-
|
|
1004
|
-
|
|
1005
|
-
|
|
1006
|
-
|
|
1007
|
-
|
|
1008
|
-
|
|
1009
|
-
|
|
1010
|
-
|
|
1011
|
-
|
|
1012
|
-
|
|
1013
|
-
|
|
1014
|
-
|
|
1015
|
-
|
|
1016
|
-
|
|
1017
|
-
|
|
1018
|
-
|
|
1019
|
-
|
|
1020
|
-
|
|
1021
|
-
|
|
1022
|
-
|
|
1023
|
-
|
|
1024
|
-
|
|
1025
|
-
|
|
1026
|
-
|
|
1027
|
-
|
|
1028
|
-
|
|
1029
|
-
|
|
1030
|
-
|
|
1031
|
-
|
|
1032
|
-
|
|
1033
|
-
|
|
1034
|
-
|
|
1035
|
-
|
|
1036
|
-
|
|
1037
|
-
|
|
1038
|
-
|
|
1039
|
-
|
|
1040
|
-
|
|
1041
|
-
|
|
1042
|
-
|
|
1043
|
-
|
|
1044
|
-
|
|
1045
|
-
|
|
1046
|
-
|
|
1047
|
-
|
|
1048
|
-
|
|
1049
|
-
|
|
1050
|
-
|
|
1051
|
-
|
|
1052
|
-
|
|
1053
|
-
|
|
1054
|
-
|
|
1055
|
-
|
|
1056
|
-
|
|
1057
|
-
|
|
1058
|
-
|
|
1059
|
-
|
|
444
|
+
});
|
|
445
|
+
});
|
|
446
|
+
};
|
|
447
|
+
BamFile.prototype.fetchPairs = function (chrId, featPromises, opts) {
|
|
448
|
+
return __awaiter(this, void 0, void 0, function () {
|
|
449
|
+
var unmatedPairs, readIds, matePromises, mateBlocks, mateChunks, i, mateTotalSize, mateFeatPromises, newMateFeats, featuresRet, newMates;
|
|
450
|
+
var _this = this;
|
|
451
|
+
return __generator(this, function (_a) {
|
|
452
|
+
switch (_a.label) {
|
|
453
|
+
case 0:
|
|
454
|
+
unmatedPairs = {};
|
|
455
|
+
readIds = {};
|
|
456
|
+
return [4 /*yield*/, Promise.all(featPromises.map(function (f) { return __awaiter(_this, void 0, void 0, function () {
|
|
457
|
+
var ret, readNames, i, name_1, id;
|
|
458
|
+
return __generator(this, function (_a) {
|
|
459
|
+
switch (_a.label) {
|
|
460
|
+
case 0: return [4 /*yield*/, f];
|
|
461
|
+
case 1:
|
|
462
|
+
ret = _a.sent();
|
|
463
|
+
readNames = {};
|
|
464
|
+
for (i = 0; i < ret.length; i++) {
|
|
465
|
+
name_1 = ret[i].name();
|
|
466
|
+
id = ret[i].id();
|
|
467
|
+
if (!readNames[name_1]) {
|
|
468
|
+
readNames[name_1] = 0;
|
|
469
|
+
}
|
|
470
|
+
readNames[name_1]++;
|
|
471
|
+
readIds[id] = 1;
|
|
472
|
+
}
|
|
473
|
+
(0, object_entries_ponyfill_1.default)(readNames).forEach(function (_a) {
|
|
474
|
+
var k = _a[0], v = _a[1];
|
|
475
|
+
if (v === 1) {
|
|
476
|
+
unmatedPairs[k] = true;
|
|
477
|
+
}
|
|
478
|
+
});
|
|
479
|
+
return [2 /*return*/];
|
|
480
|
+
}
|
|
481
|
+
});
|
|
482
|
+
}); }))];
|
|
483
|
+
case 1:
|
|
484
|
+
_a.sent();
|
|
485
|
+
matePromises = [];
|
|
486
|
+
return [4 /*yield*/, Promise.all(featPromises.map(function (f) { return __awaiter(_this, void 0, void 0, function () {
|
|
487
|
+
var ret, i, name_2;
|
|
488
|
+
return __generator(this, function (_a) {
|
|
489
|
+
switch (_a.label) {
|
|
490
|
+
case 0: return [4 /*yield*/, f];
|
|
491
|
+
case 1:
|
|
492
|
+
ret = _a.sent();
|
|
493
|
+
for (i = 0; i < ret.length; i++) {
|
|
494
|
+
name_2 = ret[i].name();
|
|
495
|
+
if (unmatedPairs[name_2] &&
|
|
496
|
+
(opts.pairAcrossChr ||
|
|
497
|
+
(ret[i]._next_refid() === chrId &&
|
|
498
|
+
Math.abs(ret[i].get('start') - ret[i]._next_pos()) <
|
|
499
|
+
(opts.maxInsertSize || 200000)))) {
|
|
500
|
+
matePromises.push(this.index.blocksForRange(ret[i]._next_refid(), ret[i]._next_pos(), ret[i]._next_pos() + 1, opts));
|
|
501
|
+
}
|
|
502
|
+
}
|
|
503
|
+
return [2 /*return*/];
|
|
504
|
+
}
|
|
505
|
+
});
|
|
506
|
+
}); }))];
|
|
507
|
+
case 2:
|
|
508
|
+
_a.sent();
|
|
509
|
+
return [4 /*yield*/, Promise.all(matePromises)];
|
|
510
|
+
case 3:
|
|
511
|
+
mateBlocks = _a.sent();
|
|
512
|
+
mateChunks = [];
|
|
513
|
+
for (i = 0; i < mateBlocks.length; i++) {
|
|
514
|
+
mateChunks = mateChunks.concat(mateBlocks[i]);
|
|
515
|
+
}
|
|
516
|
+
// filter out duplicate chunks (the blocks are lists of chunks, blocks are concatenated, then filter dup chunks)
|
|
517
|
+
mateChunks = mateChunks
|
|
518
|
+
.sort()
|
|
519
|
+
.filter(function (item, pos, ary) { return !pos || item.toString() !== ary[pos - 1].toString(); });
|
|
520
|
+
mateTotalSize = mateChunks
|
|
521
|
+
.map(function (s) { return s.fetchedSize(); })
|
|
522
|
+
.reduce(function (a, b) { return a + b; }, 0);
|
|
523
|
+
if (mateTotalSize > this.fetchSizeLimit) {
|
|
524
|
+
throw new Error("data size of ".concat(mateTotalSize.toLocaleString(), " bytes exceeded fetch size limit of ").concat(this.fetchSizeLimit.toLocaleString(), " bytes"));
|
|
525
|
+
}
|
|
526
|
+
mateFeatPromises = mateChunks.map(function (c) { return __awaiter(_this, void 0, void 0, function () {
|
|
527
|
+
var _a, data, cpositions, dpositions, chunk, feats, mateRecs, i, feature;
|
|
528
|
+
return __generator(this, function (_b) {
|
|
529
|
+
switch (_b.label) {
|
|
530
|
+
case 0: return [4 /*yield*/, this._readChunk({
|
|
531
|
+
chunk: c,
|
|
532
|
+
opts: opts,
|
|
533
|
+
})];
|
|
534
|
+
case 1:
|
|
535
|
+
_a = _b.sent(), data = _a.data, cpositions = _a.cpositions, dpositions = _a.dpositions, chunk = _a.chunk;
|
|
536
|
+
return [4 /*yield*/, this.readBamFeatures(data, cpositions, dpositions, chunk)];
|
|
537
|
+
case 2:
|
|
538
|
+
feats = _b.sent();
|
|
539
|
+
mateRecs = [];
|
|
540
|
+
for (i = 0; i < feats.length; i += 1) {
|
|
541
|
+
feature = feats[i];
|
|
542
|
+
if (unmatedPairs[feature.get('name')] && !readIds[feature.id()]) {
|
|
543
|
+
mateRecs.push(feature);
|
|
544
|
+
}
|
|
545
|
+
}
|
|
546
|
+
return [2 /*return*/, mateRecs];
|
|
547
|
+
}
|
|
548
|
+
});
|
|
549
|
+
}); });
|
|
550
|
+
return [4 /*yield*/, Promise.all(mateFeatPromises)];
|
|
551
|
+
case 4:
|
|
552
|
+
newMateFeats = _a.sent();
|
|
553
|
+
featuresRet = [];
|
|
554
|
+
if (newMateFeats.length) {
|
|
555
|
+
newMates = newMateFeats.reduce(function (result, current) {
|
|
556
|
+
return result.concat(current);
|
|
557
|
+
});
|
|
558
|
+
featuresRet = featuresRet.concat(newMates);
|
|
559
|
+
}
|
|
560
|
+
return [2 /*return*/, featuresRet];
|
|
1060
561
|
}
|
|
1061
|
-
|
|
1062
|
-
|
|
1063
|
-
|
|
1064
|
-
|
|
1065
|
-
|
|
1066
|
-
|
|
1067
|
-
|
|
1068
|
-
|
|
1069
|
-
|
|
1070
|
-
|
|
1071
|
-
|
|
1072
|
-
|
|
1073
|
-
|
|
1074
|
-
|
|
562
|
+
});
|
|
563
|
+
});
|
|
564
|
+
};
|
|
565
|
+
BamFile.prototype._readChunk = function (_a) {
|
|
566
|
+
var chunk = _a.chunk, opts = _a.opts;
|
|
567
|
+
return __awaiter(this, void 0, void 0, function () {
|
|
568
|
+
var signal, bufsize, res, bytesRead, buffer, _b, data, cpositions, dpositions;
|
|
569
|
+
return __generator(this, function (_c) {
|
|
570
|
+
switch (_c.label) {
|
|
571
|
+
case 0:
|
|
572
|
+
signal = opts.signal;
|
|
573
|
+
bufsize = chunk.fetchedSize();
|
|
574
|
+
return [4 /*yield*/, this.bam.read(Buffer.alloc(bufsize), 0, bufsize, chunk.minv.blockPosition, opts)];
|
|
575
|
+
case 1:
|
|
576
|
+
res = _c.sent();
|
|
577
|
+
bytesRead = res.bytesRead;
|
|
578
|
+
buffer = res.buffer;
|
|
579
|
+
(0, util_1.checkAbortSignal)(signal);
|
|
580
|
+
if (bytesRead < bufsize) {
|
|
581
|
+
buffer = buffer.slice(0, bytesRead);
|
|
582
|
+
}
|
|
583
|
+
else {
|
|
584
|
+
buffer = buffer.slice(0, bufsize);
|
|
585
|
+
}
|
|
586
|
+
return [4 /*yield*/, (0, bgzf_filehandle_1.unzipChunkSlice)(buffer, chunk)];
|
|
587
|
+
case 2:
|
|
588
|
+
_b = _c.sent(), data = _b.buffer, cpositions = _b.cpositions, dpositions = _b.dpositions;
|
|
589
|
+
(0, util_1.checkAbortSignal)(signal);
|
|
590
|
+
return [2 /*return*/, { data: data, cpositions: cpositions, dpositions: dpositions, chunk: chunk }];
|
|
1075
591
|
}
|
|
1076
|
-
|
|
1077
|
-
|
|
1078
|
-
|
|
1079
|
-
|
|
1080
|
-
|
|
1081
|
-
|
|
1082
|
-
|
|
1083
|
-
|
|
1084
|
-
|
|
1085
|
-
|
|
1086
|
-
|
|
1087
|
-
|
|
1088
|
-
|
|
1089
|
-
|
|
1090
|
-
|
|
1091
|
-
|
|
1092
|
-
|
|
1093
|
-
|
|
1094
|
-
|
|
1095
|
-
|
|
1096
|
-
|
|
1097
|
-
|
|
1098
|
-
|
|
1099
|
-
|
|
1100
|
-
|
|
1101
|
-
|
|
1102
|
-
|
|
1103
|
-
|
|
1104
|
-
|
|
1105
|
-
|
|
592
|
+
});
|
|
593
|
+
});
|
|
594
|
+
};
|
|
595
|
+
BamFile.prototype.readBamFeatures = function (ba, cpositions, dpositions, chunk) {
|
|
596
|
+
return __awaiter(this, void 0, void 0, function () {
|
|
597
|
+
var blockStart, sink, pos, last, blockSize, blockEnd, feature;
|
|
598
|
+
return __generator(this, function (_a) {
|
|
599
|
+
switch (_a.label) {
|
|
600
|
+
case 0:
|
|
601
|
+
blockStart = 0;
|
|
602
|
+
sink = [];
|
|
603
|
+
pos = 0;
|
|
604
|
+
last = +Date.now();
|
|
605
|
+
_a.label = 1;
|
|
606
|
+
case 1:
|
|
607
|
+
if (!(blockStart + 4 < ba.length)) return [3 /*break*/, 4];
|
|
608
|
+
blockSize = ba.readInt32LE(blockStart);
|
|
609
|
+
blockEnd = blockStart + 4 + blockSize - 1;
|
|
610
|
+
// increment position to the current decompressed status
|
|
611
|
+
if (dpositions) {
|
|
612
|
+
while (blockStart + chunk.minv.dataPosition >= dpositions[pos++]) { }
|
|
613
|
+
pos--;
|
|
614
|
+
}
|
|
615
|
+
if (!(blockEnd < ba.length)) return [3 /*break*/, 3];
|
|
616
|
+
feature = new record_1.default({
|
|
617
|
+
bytes: {
|
|
618
|
+
byteArray: ba,
|
|
619
|
+
start: blockStart,
|
|
620
|
+
end: blockEnd,
|
|
621
|
+
},
|
|
622
|
+
// the below results in an automatically calculated file-offset based ID
|
|
623
|
+
// if the info for that is available, otherwise crc32 of the features
|
|
624
|
+
//
|
|
625
|
+
// cpositions[pos] refers to actual file offset of a bgzip block boundaries
|
|
626
|
+
//
|
|
627
|
+
// we multiply by (1 <<8) in order to make sure each block has a "unique"
|
|
628
|
+
// address space so that data in that block could never overlap
|
|
629
|
+
//
|
|
630
|
+
// then the blockStart-dpositions is an uncompressed file offset from
|
|
631
|
+
// that bgzip block boundary, and since the cpositions are multiplied by
|
|
632
|
+
// (1 << 8) these uncompressed offsets get a unique space
|
|
633
|
+
//
|
|
634
|
+
// this has an extra chunk.minv.dataPosition added on because it blockStart
|
|
635
|
+
// starts at 0 instead of chunk.minv.dataPosition
|
|
636
|
+
//
|
|
637
|
+
// the +1 is just to avoid any possible uniqueId 0 but this does not realistically happen
|
|
638
|
+
fileOffset: cpositions
|
|
639
|
+
? cpositions[pos] * (1 << 8) +
|
|
640
|
+
(blockStart - dpositions[pos]) +
|
|
641
|
+
chunk.minv.dataPosition +
|
|
642
|
+
1
|
|
643
|
+
: buffer_crc32_1.default.signed(ba.slice(blockStart, blockEnd)),
|
|
644
|
+
});
|
|
645
|
+
sink.push(feature);
|
|
646
|
+
if (!(this.yieldThreadTime && +Date.now() - last > this.yieldThreadTime)) return [3 /*break*/, 3];
|
|
647
|
+
return [4 /*yield*/, (0, util_1.timeout)(1)];
|
|
648
|
+
case 2:
|
|
649
|
+
_a.sent();
|
|
650
|
+
last = +Date.now();
|
|
651
|
+
_a.label = 3;
|
|
652
|
+
case 3:
|
|
653
|
+
blockStart = blockEnd + 1;
|
|
654
|
+
return [3 /*break*/, 1];
|
|
655
|
+
case 4: return [2 /*return*/, sink];
|
|
1106
656
|
}
|
|
1107
|
-
|
|
1108
|
-
|
|
1109
|
-
|
|
1110
|
-
|
|
1111
|
-
|
|
1112
|
-
|
|
1113
|
-
|
|
1114
|
-
case 15:
|
|
1115
|
-
blockStart = blockEnd + 1;
|
|
1116
|
-
_context20.next = 4;
|
|
1117
|
-
break;
|
|
1118
|
-
|
|
1119
|
-
case 18:
|
|
1120
|
-
return _context20.abrupt("return", sink);
|
|
1121
|
-
|
|
1122
|
-
case 19:
|
|
1123
|
-
case "end":
|
|
1124
|
-
return _context20.stop();
|
|
1125
|
-
}
|
|
1126
|
-
}
|
|
1127
|
-
}, _callee12, this);
|
|
1128
|
-
}));
|
|
1129
|
-
|
|
1130
|
-
function readBamFeatures(_x14, _x15, _x16, _x17) {
|
|
1131
|
-
return _readBamFeatures.apply(this, arguments);
|
|
1132
|
-
}
|
|
1133
|
-
|
|
1134
|
-
return readBamFeatures;
|
|
1135
|
-
}()
|
|
1136
|
-
}, {
|
|
1137
|
-
key: "hasRefSeq",
|
|
1138
|
-
value: function () {
|
|
1139
|
-
var _hasRefSeq = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee13(seqName) {
|
|
1140
|
-
var refId;
|
|
1141
|
-
return _regenerator.default.wrap(function _callee13$(_context21) {
|
|
1142
|
-
while (1) {
|
|
1143
|
-
switch (_context21.prev = _context21.next) {
|
|
1144
|
-
case 0:
|
|
657
|
+
});
|
|
658
|
+
});
|
|
659
|
+
};
|
|
660
|
+
BamFile.prototype.hasRefSeq = function (seqName) {
|
|
661
|
+
return __awaiter(this, void 0, void 0, function () {
|
|
662
|
+
var refId;
|
|
663
|
+
return __generator(this, function (_a) {
|
|
1145
664
|
refId = this.chrToIndex && this.chrToIndex[seqName];
|
|
1146
|
-
return
|
|
1147
|
-
|
|
1148
|
-
|
|
1149
|
-
|
|
1150
|
-
|
|
1151
|
-
|
|
1152
|
-
|
|
1153
|
-
|
|
1154
|
-
}));
|
|
1155
|
-
|
|
1156
|
-
function hasRefSeq(_x18) {
|
|
1157
|
-
return _hasRefSeq.apply(this, arguments);
|
|
1158
|
-
}
|
|
1159
|
-
|
|
1160
|
-
return hasRefSeq;
|
|
1161
|
-
}()
|
|
1162
|
-
}, {
|
|
1163
|
-
key: "lineCount",
|
|
1164
|
-
value: function () {
|
|
1165
|
-
var _lineCount = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee14(seqName) {
|
|
1166
|
-
var refId;
|
|
1167
|
-
return _regenerator.default.wrap(function _callee14$(_context22) {
|
|
1168
|
-
while (1) {
|
|
1169
|
-
switch (_context22.prev = _context22.next) {
|
|
1170
|
-
case 0:
|
|
665
|
+
return [2 /*return*/, this.index.hasRefSeq(refId)];
|
|
666
|
+
});
|
|
667
|
+
});
|
|
668
|
+
};
|
|
669
|
+
BamFile.prototype.lineCount = function (seqName) {
|
|
670
|
+
return __awaiter(this, void 0, void 0, function () {
|
|
671
|
+
var refId;
|
|
672
|
+
return __generator(this, function (_a) {
|
|
1171
673
|
refId = this.chrToIndex && this.chrToIndex[seqName];
|
|
1172
|
-
return
|
|
1173
|
-
|
|
1174
|
-
|
|
1175
|
-
|
|
1176
|
-
|
|
1177
|
-
|
|
1178
|
-
|
|
1179
|
-
|
|
1180
|
-
|
|
1181
|
-
|
|
1182
|
-
|
|
1183
|
-
|
|
1184
|
-
|
|
1185
|
-
|
|
1186
|
-
|
|
1187
|
-
|
|
1188
|
-
|
|
1189
|
-
|
|
1190
|
-
|
|
1191
|
-
|
|
1192
|
-
var seqId;
|
|
1193
|
-
return _regenerator.default.wrap(function _callee15$(_context23) {
|
|
1194
|
-
while (1) {
|
|
1195
|
-
switch (_context23.prev = _context23.next) {
|
|
1196
|
-
case 0:
|
|
1197
|
-
_context23.next = 2;
|
|
1198
|
-
return this.index.parse();
|
|
1199
|
-
|
|
1200
|
-
case 2:
|
|
1201
|
-
seqId = this.chrToIndex && this.chrToIndex[seqName];
|
|
1202
|
-
return _context23.abrupt("return", this.index.indexCov(seqId, start, end));
|
|
1203
|
-
|
|
1204
|
-
case 4:
|
|
1205
|
-
case "end":
|
|
1206
|
-
return _context23.stop();
|
|
1207
|
-
}
|
|
1208
|
-
}
|
|
1209
|
-
}, _callee15, this);
|
|
1210
|
-
}));
|
|
1211
|
-
|
|
1212
|
-
function indexCov(_x20, _x21, _x22) {
|
|
1213
|
-
return _indexCov.apply(this, arguments);
|
|
1214
|
-
}
|
|
1215
|
-
|
|
1216
|
-
return indexCov;
|
|
1217
|
-
}()
|
|
1218
|
-
}]);
|
|
1219
|
-
return BamFile;
|
|
1220
|
-
}();
|
|
1221
|
-
|
|
674
|
+
return [2 /*return*/, this.index.lineCount(refId)];
|
|
675
|
+
});
|
|
676
|
+
});
|
|
677
|
+
};
|
|
678
|
+
BamFile.prototype.indexCov = function (seqName, start, end) {
|
|
679
|
+
return __awaiter(this, void 0, void 0, function () {
|
|
680
|
+
var seqId;
|
|
681
|
+
return __generator(this, function (_a) {
|
|
682
|
+
switch (_a.label) {
|
|
683
|
+
case 0: return [4 /*yield*/, this.index.parse()];
|
|
684
|
+
case 1:
|
|
685
|
+
_a.sent();
|
|
686
|
+
seqId = this.chrToIndex && this.chrToIndex[seqName];
|
|
687
|
+
return [2 /*return*/, this.index.indexCov(seqId, start, end)];
|
|
688
|
+
}
|
|
689
|
+
});
|
|
690
|
+
});
|
|
691
|
+
};
|
|
692
|
+
return BamFile;
|
|
693
|
+
}());
|
|
1222
694
|
exports.default = BamFile;
|
|
1223
|
-
//# sourceMappingURL=data:application/json;charset=utf-8;base64,{"version":3,"sources":["../src/bamFile.ts"],"names":["BAM_MAGIC","blockLen","BamFile","bamFilehandle","bamPath","bamUrl","baiPath","baiFilehandle","baiUrl","csiPath","csiFilehandle","csiUrl","cacheSize","fetchSizeLimit","chunkSizeLimit","yieldThreadTime","renameRefSeqs","n","renameRefSeq","bam","LocalFile","RemoteFile","Error","index","CSI","filehandle","BAI","featureCache","AbortablePromiseCache","cache","LRU","maxSize","undefined","fill","_readChunk","origOpts","opts","parse","indexData","ret","firstDataLine","blockPosition","read","Buffer","alloc","res","bytesRead","buffer","readFile","uncba","readInt32LE","headLen","header","toString","_readRefSeqs","chrToIndex","indexToChr","getHeader","start","refSeqBytes","nRef","p","i","signal","lName","refName","lRef","push","length","console","warn","chr","min","max","viewAsPairs","pairAcrossChr","maxInsertSize","records","streamRecordsForRange","chunk","chrId","chunks","blocksForRange","size","fetchedSize","totalSize","s","a","b","toLocaleString","_fetchChunkFeatures","featPromises","done","c","get","data","cpositions","dpositions","promise","readBamFeatures","then","recs","feature","seq_id","fetchPairs","unmatedPairs","readIds","all","f","readNames","name","id","k","v","matePromises","_next_refid","Math","abs","_next_pos","mateBlocks","mateChunks","item","pos","ary","mateTotalSize","mateFeatPromises","feats","mateRecs","newMateFeats","featuresRet","newMates","result","current","abortSignal","bufsize","minv","ba","blockStart","sink","last","blockSize","blockEnd","dataPosition","BAMFeature","bytes","byteArray","end","fileOffset","crc32","signed","seqName","refId","hasRefSeq","lineCount","seqId","indexCov"],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA;;AACA;;AACA;;AAEA;;AAEA;;AAEA;;AACA;;AACA;;AACA;;AAEA;;AACA;;AAEO,IAAMA,SAAS,GAAG,QAAlB;;AAEP,IAAMC,QAAQ,GAAG,KAAK,EAAtB;;IAEqBC,O;AAYnB;;;;;;;AAOA,yBA8BG;AAAA;;AAAA,QA7BDC,aA6BC,QA7BDA,aA6BC;AAAA,QA5BDC,OA4BC,QA5BDA,OA4BC;AAAA,QA3BDC,MA2BC,QA3BDA,MA2BC;AAAA,QA1BDC,OA0BC,QA1BDA,OA0BC;AAAA,QAzBDC,aAyBC,QAzBDA,aAyBC;AAAA,QAxBDC,MAwBC,QAxBDA,MAwBC;AAAA,QAvBDC,OAuBC,QAvBDA,OAuBC;AAAA,QAtBDC,aAsBC,QAtBDA,aAsBC;AAAA,QArBDC,MAqBC,QArBDA,MAqBC;AAAA,QApBDC,SAoBC,QApBDA,SAoBC;AAAA,QAnBDC,cAmBC,QAnBDA,cAmBC;AAAA,QAlBDC,cAkBC,QAlBDA,cAkBC;AAAA,oCAjBDC,eAiBC;AAAA,QAjBDA,eAiBC,qCAjBiB,GAiBjB;AAAA,kCAhBDC,aAgBC;AAAA,QAhBDA,aAgBC,mCAhBe,UAAAC,CAAC;AAAA,aAAIA,CAAJ;AAAA,KAgBhB;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AACD,SAAKC,YAAL,GAAoBF,aAApB;;AAEA,QAAIb,aAAJ,EAAmB;AACjB,WAAKgB,GAAL,GAAWhB,aAAX;AACD,KAFD,MAEO,IAAIC,OAAJ,EAAa;AAClB,WAAKe,GAAL,GAAW,IAAIC,4BAAJ,CAAchB,OAAd,CAAX;AACD,KAFM,MAEA,IAAIC,MAAJ,EAAY;AACjB,WAAKc,GAAL,GAAW,IAAIE,6BAAJ,CAAehB,MAAf,CAAX;AACD,KAFM,MAEA;AACL,YAAM,IAAIiB,KAAJ,CAAU,0BAAV,CAAN;AACD;;AACD,QAAIZ,aAAJ,EAAmB;AACjB,WAAKa,KAAL,GAAa,IAAIC,YAAJ,CAAQ;AAAEC,QAAAA,UAAU,EAAEf;AAAd,OAAR,CAAb;AACD,KAFD,MAEO,IAAID,OAAJ,EAAa;AAClB,WAAKc,KAAL,GAAa,IAAIC,YAAJ,CAAQ;AAAEC,QAAAA,UAAU,EAAE,IAAIL,4BAAJ,CAAcX,OAAd;AAAd,OAAR,CAAb;AACD,KAFM,MAEA,IAAIE,MAAJ,EAAY;AACjB,WAAKY,KAAL,GAAa,IAAIC,YAAJ,CAAQ;AAAEC,QAAAA,UAAU,EAAE,IAAIJ,6BAAJ,CAAeV,MAAf;AAAd,OAAR,CAAb;AACD,KAFM,MAEA,IAAIJ,aAAJ,EAAmB;AACxB,WAAKgB,KAAL,GAAa,IAAIG,YAAJ,CAAQ;AAAED,QAAAA,UAAU,EAAElB;AAAd,OAAR,CAAb;AACD,KAFM,MAEA,IAAID,OAAJ,EAAa;AAClB,WAAKiB,KAAL,GAAa,IAAIG,YAAJ,CAAQ;AAAED,QAAAA,UAAU,EAAE,IAAIL,4BAAJ,CAAcd,OAAd;AAAd,OAAR,CAAb;AACD,KAFM,MAEA,IAAIE,MAAJ,EAAY;AACjB,WAAKe,KAAL,GAAa,IAAIG,YAAJ,CAAQ;AAAED,QAAAA,UAAU,EAAE,IAAIJ,6BAAJ,CAAeb,MAAf;AAAd,OAAR,CAAb;AACD,KAFM,MAEA,IAAIJ,OAAJ,EAAa;AAClB,WAAKmB,KAAL,GAAa,IAAIG,YAAJ,CAAQ;AAAED,QAAAA,UAAU,EAAE,IAAIL,4BAAJ,WAAiBhB,OAAjB;AAAd,OAAR,CAAb;AACD,KAFM,MAEA,IAAIC,MAAJ,EAAY;AACjB,WAAKkB,KAAL,GAAa,IAAIG,YAAJ,CAAQ;AAAED,QAAAA,UAAU,EAAE,IAAIJ,6BAAJ,WAAkBhB,MAAlB;AAAd,OAAR,CAAb;AACD,KAFM,MAEA;AACL,YAAM,IAAIiB,KAAJ,CAAU,8BAAV,CAAN;AACD;;AACD,SAAKK,YAAL,GAAoB,IAAIC,8BAAJ,CAA0B;AAC5CC,MAAAA,KAAK,EAAE,IAAIC,iBAAJ,CAAQ;AACbC,QAAAA,OAAO,EAAEnB,SAAS,KAAKoB,SAAd,GAA0BpB,SAA1B,GAAsC;AADlC,OAAR,CADqC;AAI5CqB,MAAAA,IAAI,EAAE,mCAAKC,UAAL,iBAAqB,IAArB;AAJsC,KAA1B,CAApB;AAMA,SAAKrB,cAAL,GAAsBA,cAAc,IAAI,SAAxC,CArCC,CAqCiD;;AAClD,SAAKC,cAAL,GAAsBA,cAAc,IAAI,SAAxC,CAtCC,CAsCiD;;AAClD,SAAKC,eAAL,GAAuBA,eAAvB;AACD;;;;;;;;;;;;;;;;;;;;;;;;AAEeoB,gBAAAA,Q,2DAAmC,E;AAC3CC,gBAAAA,I,GAAO,oBAASD,QAAT,C;;uBACW,KAAKZ,KAAL,CAAWc,KAAX,CAAiBD,IAAjB,C;;;AAAlBE,gBAAAA,S;AACAC,gBAAAA,G,GAAMD,SAAS,CAACE,aAAV,GAA0BF,SAAS,CAACE,aAAV,CAAwBC,aAAxB,GAAwC,KAAlE,GAA0ET,S;;qBAElFO,G;;;;;;uBACgB,KAAKpB,GAAL,CAASuB,IAAT,CAAcC,MAAM,CAACC,KAAP,CAAaL,GAAG,GAAGtC,QAAnB,CAAd,EAA4C,CAA5C,EAA+CsC,GAAG,GAAGtC,QAArD,EAA+D,CAA/D,EAAkEmC,IAAlE,C;;;AAAZS,gBAAAA,G;AAEEC,gBAAAA,S,GAAcD,G,CAAdC,S;AACJC,gBAAAA,M,GAAWF,G,CAAXE,M;;oBACCD,S;;;;;sBACG,IAAIxB,KAAJ,CAAU,sBAAV,C;;;AAER,oBAAIwB,SAAS,GAAGP,GAAhB,EAAqB;AACnBQ,kBAAAA,MAAM,GAAG,oBAAAA,MAAM,MAAN,CAAAA,MAAM,EAAO,CAAP,EAAUD,SAAV,CAAf;AACD,iBAFD,MAEO;AACLC,kBAAAA,MAAM,GAAG,oBAAAA,MAAM,MAAN,CAAAA,MAAM,EAAO,CAAP,EAAUR,GAAV,CAAf;AACD;;;;;;;uBAEe,KAAKpB,GAAL,CAAS6B,QAAT,CAAkBZ,IAAlB,C;;;AAAhBW,gBAAAA,M;;;;uBAGkB,2BAAMA,MAAN,C;;;AAAdE,gBAAAA,K;;sBAEFA,KAAK,CAACC,WAAN,CAAkB,CAAlB,MAAyBlD,S;;;;;sBACrB,IAAIsB,KAAJ,CAAU,gBAAV,C;;;AAEF6B,gBAAAA,O,GAAUF,KAAK,CAACC,WAAN,CAAkB,CAAlB,C;AAEhB,qBAAKE,MAAL,GAAcH,KAAK,CAACI,QAAN,CAAe,MAAf,EAAuB,CAAvB,EAA0B,IAAIF,OAA9B,CAAd;;uBACyC,KAAKG,YAAL,CAAkBH,OAAO,GAAG,CAA5B,EAA+B,KAA/B,EAAsCf,IAAtC,C;;;;AAAjCmB,gBAAAA,U,yBAAAA,U;AAAYC,gBAAAA,U,yBAAAA,U;AACpB,qBAAKD,UAAL,GAAkBA,UAAlB;AACA,qBAAKC,UAAL,GAAkBA,UAAlB;kDAEO,0BAAgB,KAAKJ,MAArB,C;;;;;;;;;;;;;;;;;;;;;;;;;;AAGWhB,gBAAAA,I,8DAAiB,E;;uBAC7B,KAAKqB,SAAL,CAAerB,IAAf,C;;;kDACC,KAAKgB,M;;;;;;;;;;;;;;;QAGd;AACA;;;;;oHAEEM,K,EACAC,W;;;;;;;;;;;;;;;;;;;AACAvB,gBAAAA,I,8DAAiB,E;;sBAKbsB,KAAK,GAAGC,W;;;;;kDACH,KAAKL,YAAL,CAAkBI,KAAlB,EAAyBC,WAAW,GAAG,CAAvC,EAA0CvB,IAA1C,C;;;;uBAES,KAAKjB,GAAL,CAASuB,IAAT,CAAcC,MAAM,CAACC,KAAP,CAAae,WAAW,GAAG1D,QAA3B,CAAd,EAAoD,CAApD,EAAuD0D,WAAvD,EAAoE,CAApE,EAAuEvB,IAAvE,C;;;AAAZS,gBAAAA,G;AACEC,gBAAAA,S,GAAcD,G,CAAdC,S;AACFC,gBAAAA,M,GAAWF,G,CAAXE,M;;oBACDD,S;;;;;sBACG,IAAIxB,KAAJ,CAAU,mCAAV,C;;;AAER,oBAAIwB,SAAS,GAAGa,WAAhB,EAA6B;AAC3BZ,kBAAAA,MAAM,GAAG,oBAAAA,MAAM,MAAN,CAAAA,MAAM,EAAO,CAAP,EAAUD,SAAV,CAAf;AACD,iBAFD,MAEO;AACLC,kBAAAA,MAAM,GAAG,oBAAAA,MAAM,MAAN,CAAAA,MAAM,EAAO,CAAP,EAAUY,WAAV,CAAf;AACD;;;uBACmB,2BAAMZ,MAAN,C;;;AAAdE,gBAAAA,K;AACAW,gBAAAA,I,GAAOX,KAAK,CAACC,WAAN,CAAkBQ,KAAlB,C;AACTG,gBAAAA,C,GAAIH,KAAK,GAAG,C;AACVH,gBAAAA,U,GAAwC,E;AACxCC,gBAAAA,U,GAAoD,E;AACjDM,gBAAAA,C,GAAI,C;;;sBAAGA,CAAC,GAAGF,I;;;;;;uBACZ,2BAAgBxB,IAAI,CAAC2B,MAArB,C;;;AACAC,gBAAAA,K,GAAQf,KAAK,CAACC,WAAN,CAAkBW,CAAlB,C;AACVI,gBAAAA,O,GAAUhB,KAAK,CAACI,QAAN,CAAe,MAAf,EAAuBQ,CAAC,GAAG,CAA3B,EAA8BA,CAAC,GAAG,CAAJ,GAAQG,KAAR,GAAgB,CAA9C,C;AACdC,gBAAAA,OAAO,GAAG,KAAK/C,YAAL,CAAkB+C,OAAlB,CAAV;AACMC,gBAAAA,I,GAAOjB,KAAK,CAACC,WAAN,CAAkBW,CAAC,GAAGG,KAAJ,GAAY,CAA9B,C;AAEbT,gBAAAA,UAAU,CAACU,OAAD,CAAV,GAAsBH,CAAtB;AACAN,gBAAAA,UAAU,CAACW,IAAX,CAAgB;AAAEF,kBAAAA,OAAO,EAAPA,OAAF;AAAWG,kBAAAA,MAAM,EAAEF;AAAnB,iBAAhB;AAEAL,gBAAAA,CAAC,GAAGA,CAAC,GAAG,CAAJ,GAAQG,KAAZ;;sBACIH,CAAC,GAAGZ,KAAK,CAACmB,M;;;;;AACZC,gBAAAA,OAAO,CAACC,IAAR,gDAAqDX,WAArD;kDACO,KAAKL,YAAL,CAAkBI,KAAlB,EAAyBC,WAAW,GAAG,CAAvC,EAA0CvB,IAA1C,C;;;AAbe0B,gBAAAA,CAAC,IAAI,C;;;;;kDAgBxB;AAAEP,kBAAAA,UAAU,EAAVA,UAAF;AAAcC,kBAAAA,UAAU,EAAVA;AAAd,iB;;;;;;;;;;;;;;;;;;;0HAIPe,G,EACAC,G,EACAC,G;;;;;;;;;;;;;;;;AACArC,gBAAAA,I,8DAAgB;AAAEsC,kBAAAA,WAAW,EAAE,KAAf;AAAsBC,kBAAAA,aAAa,EAAE,KAArC;AAA4CC,kBAAAA,aAAa,EAAE;AAA3D,iB;AAEZC,gBAAAA,O,GAAwB,E;;;;yDACF,KAAKC,qBAAL,CAA2BP,GAA3B,EAAgCC,GAAhC,EAAqCC,GAArC,EAA0CrC,IAA1C,C;;;;;;;;;;;;;;;;;;;;AAAT2C,gBAAAA,K;AACfF,gBAAAA,OAAO,GAAG,qBAAAA,OAAO,MAAP,CAAAA,OAAO,EAAQE,KAAR,CAAjB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kDAEKF,O;;;;;;;;;;;;;;;;;;0CAIPN,G,EACAC,G,EACAC,G,EAEA;AAAA;;AAAA,UADArC,IACA,uEADgB;AAAEsC,QAAAA,WAAW,EAAE,KAAf;AAAsBC,QAAAA,aAAa,EAAE,KAArC;AAA4CC,QAAAA,aAAa,EAAE;AAA3D,OAChB;AAAA;AAAA;;AAAA;;AAAA;AAAA;AAAA;AAAA;AACA;AACAxC,gBAAAA,IAAI,CAACsC,WAAL,GAAmBtC,IAAI,CAACsC,WAAL,IAAoB,KAAvC;AACAtC,gBAAAA,IAAI,CAACuC,aAAL,GAAqBvC,IAAI,CAACuC,aAAL,IAAsB,KAA3C;AACAvC,gBAAAA,IAAI,CAACwC,aAAL,GAAqBxC,IAAI,CAACwC,aAAL,KAAuB5C,SAAvB,GAAmCI,IAAI,CAACwC,aAAxC,GAAwD,MAA7E;AACMI,gBAAAA,KALN,GAKc,KAAI,CAACzB,UAAL,IAAmB,KAAI,CAACA,UAAL,CAAgBgB,GAAhB,CALjC;;AAAA,oBAOMS,KAAK,IAAI,CAPf;AAAA;AAAA;AAAA;;AAQEC,gBAAAA,MAAM,GAAG,EAAT;AARF;AAAA;;AAAA;AAAA;AAAA,0DAUiB,KAAI,CAAC1D,KAAL,CAAW2D,cAAX,CAA0BF,KAA1B,EAAiCR,GAAG,GAAG,CAAvC,EAA0CC,GAA1C,EAA+CrC,IAA/C,CAVjB;;AAAA;AAUE6C,gBAAAA,MAVF;;AAAA,oBAYOA,MAZP;AAAA;AAAA;AAAA;;AAAA,sBAaU,IAAI3D,KAAJ,CAAU,sBAAV,CAbV;;AAAA;AAiBSwC,gBAAAA,CAjBT,GAiBa,CAjBb;;AAAA;AAAA,sBAiBgBA,CAAC,GAAGmB,MAAM,CAACb,MAjB3B;AAAA;AAAA;AAAA;;AAAA;AAAA,0DAkBQ,2BAAgBhC,IAAI,CAAC2B,MAArB,CAlBR;;AAAA;AAmBQoB,gBAAAA,IAnBR,GAmBeF,MAAM,CAACnB,CAAD,CAAN,CAAUsB,WAAV,EAnBf;;AAAA,sBAoBMD,IAAI,GAAG,KAAI,CAACrE,cApBlB;AAAA;AAAA;AAAA;;AAAA,sBAqBU,IAAIQ,KAAJ,kFACqC6D,IADrC,wDAC6E,KAAI,CAACrE,cADlF,EArBV;;AAAA;AAiBmCgD,gBAAAA,CAAC,IAAI,CAjBxC;AAAA;AAAA;;AAAA;AA2BMuB,gBAAAA,SA3BN,GA2BkB,mDAAAJ,MAAM,MAAN,CAAAA,MAAM,EACjB,UAACK,CAAD;AAAA,yBAAcA,CAAC,CAACF,WAAF,EAAd;AAAA,iBADiB,CAAN,kBAER,UAACG,CAAD,EAAYC,CAAZ;AAAA,yBAA0BD,CAAC,GAAGC,CAA9B;AAAA,iBAFQ,EAEyB,CAFzB,CA3BlB;;AAAA,sBA8BIH,SAAS,GAAG,KAAI,CAACxE,cA9BrB;AAAA;AAAA;AAAA;;AAAA,sBA+BQ,IAAIS,KAAJ,yDACY+D,SAAS,CAACI,cAAV,EADZ,2DAC6E,KAAI,CAAC5E,cAAL,CAAoB4E,cAApB,EAD7E,YA/BR;;AAAA;AAmCA,kHAAO,KAAI,CAACC,mBAAL,CAAyBT,MAAzB,EAAiCD,KAAjC,EAAwCR,GAAxC,EAA6CC,GAA7C,EAAkDrC,IAAlD,CAAP;;AAnCA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAoCD;;;wCAGC6C,M,EACAD,K,EACAR,G,EACAC,G,EACArC,I,EACA;AAAA;;AAAA;AAAA;;AAAA;AAAA;AAAA;AAAA;AACMuD,gBAAAA,YADN,GACqB,EADrB;AAEIC,gBAAAA,IAFJ,GAEW,KAFX;AAIS9B,gBAAAA,CAJT,GAIa,CAJb;;AAAA;AAAA,sBAIgBA,CAAC,GAAGmB,MAAM,CAACb,MAJ3B;AAAA;AAAA;AAAA;;AAKQyB,gBAAAA,CALR,GAKYZ,MAAM,CAACnB,CAAD,CALlB;AAAA;AAAA,0DAMwD,MAAI,CAACnC,YAAL,CAAkBmE,GAAlB,CACpDD,CAAC,CAACxC,QAAF,EADoD,EAEpD;AAAE0B,kBAAAA,KAAK,EAAEc,CAAT;AAAYzD,kBAAAA,IAAI,EAAJA;AAAZ,iBAFoD,EAGpDA,IAAI,CAAC2B,MAH+C,CANxD;;AAAA;AAAA;AAMUgC,gBAAAA,IANV,yBAMUA,IANV;AAMgBC,gBAAAA,UANhB,yBAMgBA,UANhB;AAM4BC,gBAAAA,UAN5B,yBAM4BA,UAN5B;AAMwClB,gBAAAA,KANxC,yBAMwCA,KANxC;AAWQmB,gBAAAA,OAXR,GAWkB,MAAI,CAACC,eAAL,CAAqBJ,IAArB,EAA2BC,UAA3B,EAAuCC,UAAvC,EAAmDlB,KAAnD,EAA0DqB,IAA1D,CAA+D,UAAAvB,OAAO,EAAI;AACxF,sBAAMwB,IAAI,GAAG,EAAb;;AACA,uBAAK,IAAIvC,EAAC,GAAG,CAAb,EAAgBA,EAAC,GAAGe,OAAO,CAACT,MAA5B,EAAoCN,EAAC,IAAI,CAAzC,EAA4C;AAC1C,wBAAMwC,OAAO,GAAGzB,OAAO,CAACf,EAAD,CAAvB;;AACA,wBAAIwC,OAAO,CAACC,MAAR,OAAqBvB,KAAzB,EAAgC;AAC9B,0BAAIsB,OAAO,CAACR,GAAR,CAAY,OAAZ,KAAwBrB,GAA5B,EAAiC;AAC/B;AACAmB,wBAAAA,IAAI,GAAG,IAAP;AACA;AACD,uBAJD,MAIO,IAAIU,OAAO,CAACR,GAAR,CAAY,KAAZ,KAAsBtB,GAA1B,EAA+B;AACpC;AACA6B,wBAAAA,IAAI,CAAClC,IAAL,CAAUmC,OAAV;AACD;AACF;AACF;;AACD,yBAAOD,IAAP;AACD,iBAhBe,CAXlB;AA4BEV,gBAAAA,YAAY,CAACxB,IAAb,CAAkB+B,OAAlB;AA5BF;AAAA,0DA6BQA,OA7BR;;AAAA;AAAA,qBA8BMN,IA9BN;AAAA;AAAA;AAAA;;AAAA;;AAAA;AAImC9B,gBAAAA,CAAC,EAJpC;AAAA;AAAA;;AAAA;AAmCA,4CAAiB1B,IAAI,CAAC2B,MAAtB;AAESD,gBAAAA,GArCT,GAqCa,CArCb;;AAAA;AAAA,sBAqCgBA,GAAC,GAAG6B,YAAY,CAACvB,MArCjC;AAAA;AAAA;AAAA;;AAAA;AAsCE,uBAAMuB,YAAY,CAAC7B,GAAD,CAAlB;;AAtCF;AAqCyCA,gBAAAA,GAAC,EArC1C;AAAA;AAAA;;AAAA;AAwCA,4CAAiB1B,IAAI,CAAC2B,MAAtB;;AAxCA,qBAyCI3B,IAAI,CAACsC,WAzCT;AAAA;AAAA;AAAA;;AAAA;AA0CE,uBAAM,MAAI,CAAC8B,UAAL,CAAgBxB,KAAhB,EAAuBW,YAAvB,EAAqCvD,IAArC,CAAN;;AA1CF;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AA4CD;;;;mHAEgB4C,K,EAAeW,Y,EAAuCvD,I;;;;;;;;;;;AAC/DqE,gBAAAA,Y,GAA2C,E;AAC3CC,gBAAAA,O,GAAqC,E;;uBACrC,iBAAQC,GAAR,CACJ,kBAAAhB,YAAY,MAAZ,CAAAA,YAAY;AAAA,sGAAK,kBAAMiB,CAAN;AAAA;;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,mCACGA,CADH;;AAAA;AACTrE,4BAAAA,GADS;AAETsE,4BAAAA,SAFS,GAE8B,EAF9B;;AAGf,iCAAS/C,CAAT,GAAa,CAAb,EAAgBA,CAAC,GAAGvB,GAAG,CAAC6B,MAAxB,EAAgCN,CAAC,EAAjC,EAAqC;AAC7BgD,8BAAAA,IAD6B,GACtBvE,GAAG,CAACuB,CAAD,CAAH,CAAOgD,IAAP,EADsB;AAE7BC,8BAAAA,EAF6B,GAExBxE,GAAG,CAACuB,CAAD,CAAH,CAAOiD,EAAP,EAFwB;;AAGnC,kCAAI,CAACF,SAAS,CAACC,IAAD,CAAd,EAAsB;AACpBD,gCAAAA,SAAS,CAACC,IAAD,CAAT,GAAkB,CAAlB;AACD;;AACDD,8BAAAA,SAAS,CAACC,IAAD,CAAT;AACAJ,8BAAAA,OAAO,CAACK,EAAD,CAAP,GAAc,CAAd;AACD;;AACD,oFAAQF,SAAR,oBAA2B,iBAA8B;AAAA;AAAA,kCAA5BG,CAA4B;AAAA,kCAAzBC,CAAyB;;AACvD,kCAAIA,CAAC,KAAK,CAAV,EAAa;AACXR,gCAAAA,YAAY,CAACO,CAAD,CAAZ,GAAkB,IAAlB;AACD;AACF,6BAJD;;AAZe;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,mBAAL;;AAAA;AAAA;AAAA;AAAA,oBADR,C;;;AAqBAE,gBAAAA,Y,GAAmC,E;;uBACnC,iBAAQP,GAAR,CACJ,kBAAAhB,YAAY,MAAZ,CAAAA,YAAY;AAAA,sGAAK,kBAAMiB,CAAN;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,mCACGA,CADH;;AAAA;AACTrE,4BAAAA,GADS;;AAEf,iCAASuB,CAAT,GAAa,CAAb,EAAgBA,CAAC,GAAGvB,GAAG,CAAC6B,MAAxB,EAAgCN,CAAC,EAAjC,EAAqC;AAC7BgD,8BAAAA,IAD6B,GACtBvE,GAAG,CAACuB,CAAD,CAAH,CAAOgD,IAAP,EADsB;;AAEnC,kCACEL,YAAY,CAACK,IAAD,CAAZ,KACC1E,IAAI,CAACuC,aAAL,IACEpC,GAAG,CAACuB,CAAD,CAAH,CAAOqD,WAAP,OAAyBnC,KAAzB,IACCoC,IAAI,CAACC,GAAL,CAAS9E,GAAG,CAACuB,CAAD,CAAH,CAAOgC,GAAP,CAAW,OAAX,IAAsBvD,GAAG,CAACuB,CAAD,CAAH,CAAOwD,SAAP,EAA/B,KACGlF,IAAI,CAACwC,aAAL,IAAsB,MADzB,CAHJ,CADF,EAME;AACAsC,gCAAAA,YAAY,CAAC/C,IAAb,CACE,MAAI,CAAC5C,KAAL,CAAW2D,cAAX,CACE3C,GAAG,CAACuB,CAAD,CAAH,CAAOqD,WAAP,EADF,EAEE5E,GAAG,CAACuB,CAAD,CAAH,CAAOwD,SAAP,EAFF,EAGE/E,GAAG,CAACuB,CAAD,CAAH,CAAOwD,SAAP,KAAqB,CAHvB,EAIElF,IAJF,CADF;AAQD;AACF;;AApBc;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,mBAAL;;AAAA;AAAA;AAAA;AAAA,oBADR,C;;;;uBAyBmB,iBAAQuE,GAAR,CAAYO,YAAZ,C;;;AAAnBK,gBAAAA,U;AACFC,gBAAAA,U,GAAsB,E;;AAC1B,qBAAS1D,CAAT,GAAa,CAAb,EAAgBA,CAAC,GAAGyD,UAAU,CAACnD,MAA/B,EAAuCN,CAAC,EAAxC,EAA4C;AAC1C0D,kBAAAA,UAAU,GAAG,qBAAAA,UAAU,MAAV,CAAAA,UAAU,EAAQD,UAAU,CAACzD,CAAD,CAAlB,CAAvB;AACD,iB,CACD;;;AACA0D,gBAAAA,UAAU,GAAG,qDAAAA,UAAU,MAAV,CAAAA,UAAU,OAAV,aAEH,UAACC,IAAD,EAAOC,GAAP,EAAYC,GAAZ;AAAA,yBAAoB,CAACD,GAAD,IAAQD,IAAI,CAACpE,QAAL,OAAoBsE,GAAG,CAACD,GAAG,GAAG,CAAP,CAAH,CAAarE,QAAb,EAAhD;AAAA,iBAFG,CAAb;AAIMuE,gBAAAA,a,GAAgB,oDAAAJ,UAAU,MAAV,CAAAA,UAAU,EAAK,UAAAlC,CAAC;AAAA,yBAAIA,CAAC,CAACF,WAAF,EAAJ;AAAA,iBAAN,CAAV,mBAA4C,UAACG,CAAD,EAAIC,CAAJ;AAAA,yBAAUD,CAAC,GAAGC,CAAd;AAAA,iBAA5C,EAA6D,CAA7D,C;;sBAClBoC,aAAa,GAAG,KAAK/G,c;;;;;sBACjB,IAAIS,KAAJ,0DACYsG,aAAa,CAACnC,cAAd,EADZ,4DACiF,KAAK5E,cAAL,CAAoB4E,cAApB,EADjF,Y;;;AAIFoC,gBAAAA,gB,GAAmB,kBAAAL,UAAU,MAAV,CAAAA,UAAU;AAAA,sGAAK,kBAAM3B,CAAN;AAAA;;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,mCACgB,MAAI,CAAClE,YAAL,CAAkBmE,GAAlB,CACpDD,CAAC,CAACxC,QAAF,EADoD,EAEpD;AAAE0B,8BAAAA,KAAK,EAAEc,CAAT;AAAYzD,8BAAAA,IAAI,EAAJA;AAAZ,6BAFoD,EAGpDA,IAAI,CAAC2B,MAH+C,CADhB;;AAAA;AAAA;AAC9BgC,4BAAAA,IAD8B,yBAC9BA,IAD8B;AACxBC,4BAAAA,UADwB,yBACxBA,UADwB;AACZC,4BAAAA,UADY,yBACZA,UADY;AACAlB,4BAAAA,KADA,yBACAA,KADA;AAAA;AAAA,mCAMlB,MAAI,CAACoB,eAAL,CAAqBJ,IAArB,EAA2BC,UAA3B,EAAuCC,UAAvC,EAAmDlB,KAAnD,CANkB;;AAAA;AAMhC+C,4BAAAA,KANgC;AAOhCC,4BAAAA,QAPgC,GAOrB,EAPqB;;AAQtC,iCAASjE,GAAT,GAAa,CAAb,EAAgBA,GAAC,GAAGgE,KAAK,CAAC1D,MAA1B,EAAkCN,GAAC,IAAI,CAAvC,EAA0C;AAClCwC,8BAAAA,OADkC,GACxBwB,KAAK,CAAChE,GAAD,CADmB;;AAExC,kCAAI2C,YAAY,CAACH,OAAO,CAACR,GAAR,CAAY,MAAZ,CAAD,CAAZ,IAAqC,CAACY,OAAO,CAACJ,OAAO,CAACS,EAAR,EAAD,CAAjD,EAAiE;AAC/DgB,gCAAAA,QAAQ,CAAC5D,IAAT,CAAcmC,OAAd;AACD;AACF;;AAbqC,+DAc/ByB,QAd+B;;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,mBAAL;;AAAA;AAAA;AAAA;AAAA,oB;;uBAgBR,iBAAQpB,GAAR,CAAYkB,gBAAZ,C;;;AAArBG,gBAAAA,Y;AACFC,gBAAAA,W,GAA4B,E;;AAChC,oBAAID,YAAY,CAAC5D,MAAjB,EAAyB;AACjB8D,kBAAAA,QADiB,GACN,qBAAAF,YAAY,MAAZ,CAAAA,YAAY,EAAQ,UAACG,MAAD,EAASC,OAAT;AAAA,2BAAqB,qBAAAD,MAAM,MAAN,CAAAA,MAAM,EAAQC,OAAR,CAA3B;AAAA,mBAAR,CADN;AAEvBH,kBAAAA,WAAW,GAAG,qBAAAA,WAAW,MAAX,CAAAA,WAAW,EAAQC,QAAR,CAAzB;AACD;;mDACMD,W;;;;;;;;;;;;;;;;;;;0HAG6DI,W;;;;;;;AAAnDtD,gBAAAA,K,SAAAA,K,EAAO3C,I,SAAAA,I;AAClByD,gBAAAA,C,GAAId,K;AACJuD,gBAAAA,O,GAAUzC,CAAC,CAACT,WAAF,E;;uBACE,KAAKjE,GAAL,CAASuB,IAAT,CAAcC,MAAM,CAACC,KAAP,CAAa0F,OAAb,CAAd,EAAqC,CAArC,EAAwCA,OAAxC,EAAiDzC,CAAC,CAAC0C,IAAF,CAAO9F,aAAxD,EAAuEL,IAAvE,C;;;AAAZS,gBAAAA,G;AACEC,gBAAAA,S,GAAcD,G,CAAdC,S;AACFC,gBAAAA,M,GAAWF,G,CAAXE,M;AACN,4CAAiBsF,WAAjB;;oBACKvF,S;;;;;mDACI,E;;;AAET,oBAAIA,SAAS,GAAGwF,OAAhB,EAAyB;AACvBvF,kBAAAA,MAAM,GAAG,oBAAAA,MAAM,MAAN,CAAAA,MAAM,EAAO,CAAP,EAAUD,SAAV,CAAf;AACD,iBAFD,MAEO;AACLC,kBAAAA,MAAM,GAAG,oBAAAA,MAAM,MAAN,CAAAA,MAAM,EAAO,CAAP,EAAUuF,OAAV,CAAf;AACD;;;uBAEsD,qCAAgBvF,MAAhB,EAAwBgC,KAAxB,C;;;;AAAvCgB,gBAAAA,I,yBAARhD,M;AAAciD,gBAAAA,U,yBAAAA,U;AAAYC,gBAAAA,U,yBAAAA,U;AAClC,4CAAiBoC,WAAjB;mDACO;AAAEtC,kBAAAA,IAAI,EAAJA,IAAF;AAAQC,kBAAAA,UAAU,EAAVA,UAAR;AAAoBC,kBAAAA,UAAU,EAAVA,UAApB;AAAgClB,kBAAAA,KAAK,EAALA;AAAhC,iB;;;;;;;;;;;;;;;;;;;wHAGayD,E,EAAYxC,U,EAAsBC,U,EAAsBlB,K;;;;;;AACxE0D,gBAAAA,U,GAAa,C;AACXC,gBAAAA,I,GAAO,E;AACThB,gBAAAA,G,GAAM,C;AACNiB,gBAAAA,I,GAAO,CAAC,mB;;;sBAELF,UAAU,GAAG,CAAb,GAAiBD,EAAE,CAACpE,M;;;;;AACnBwE,gBAAAA,S,GAAYJ,EAAE,CAACtF,WAAH,CAAeuF,UAAf,C;AACZI,gBAAAA,Q,GAAWJ,UAAU,GAAG,CAAb,GAAiBG,SAAjB,GAA6B,C,EAE9C;;AACA,oBAAI3C,UAAJ,EAAgB;AACd,yBAAOwC,UAAU,GAAG1D,KAAK,CAACwD,IAAN,CAAWO,YAAxB,IAAwC7C,UAAU,CAACyB,GAAG,EAAJ,CAAzD,EAAkE,CAAE;;AACpEA,kBAAAA,GAAG;AACJ,iB,CAED;;;sBACImB,QAAQ,GAAGL,EAAE,CAACpE,M;;;;;AACVkC,gBAAAA,O,GAAU,IAAIyC,eAAJ,CAAe;AAC7BC,kBAAAA,KAAK,EAAE;AACLC,oBAAAA,SAAS,EAAET,EADN;AAEL9E,oBAAAA,KAAK,EAAE+E,UAFF;AAGLS,oBAAAA,GAAG,EAAEL;AAHA,mBADsB;AAM7B;AACA;AACA;AACA;AACA;AACA;AACA;AACA;AACA;AACA;AACA;AACA;AACA;AACA;AACA;AACA;AACAM,kBAAAA,UAAU,EAAEnD,UAAU,GAClBA,UAAU,CAAC0B,GAAD,CAAV,IAAmB,KAAK,CAAxB,KACCe,UAAU,GAAGxC,UAAU,CAACyB,GAAD,CADxB,IAEA3C,KAAK,CAACwD,IAAN,CAAWO,YAFX,GAGA,CAJkB,GAKlBM,mBAAMC,MAAN,CAAa,oBAAAb,EAAE,MAAF,CAAAA,EAAE,EAAOC,UAAP,EAAmBI,QAAnB,CAAf;AA3ByB,iBAAf,C;AA8BhBH,gBAAAA,IAAI,CAACvE,IAAL,CAAUmC,OAAV;;sBACI,KAAKvF,eAAL,IAAwB,CAAC,mBAAD,GAAc4H,IAAd,GAAqB,KAAK5H,e;;;;;;uBAC9C,mBAAQ,CAAR,C;;;AACN4H,gBAAAA,IAAI,GAAG,CAAC,mBAAR;;;AAIJF,gBAAAA,UAAU,GAAGI,QAAQ,GAAG,CAAxB;;;;;mDAEKH,I;;;;;;;;;;;;;;;;;;;kHAGOY,O;;;;;;AACRC,gBAAAA,K,GAAQ,KAAKhG,UAAL,IAAmB,KAAKA,UAAL,CAAgB+F,OAAhB,C;mDAC1B,KAAK/H,KAAL,CAAWiI,SAAX,CAAqBD,KAArB,C;;;;;;;;;;;;;;;;;;;kHAGOD,O;;;;;;AACRC,gBAAAA,K,GAAQ,KAAKhG,UAAL,IAAmB,KAAKA,UAAL,CAAgB+F,OAAhB,C;mDAC1B,KAAK/H,KAAL,CAAWkI,SAAX,CAAqBF,KAArB,C;;;;;;;;;;;;;;;;;;;iHAGMD,O,EAAiB5F,K,EAAgBwF,G;;;;;;;uBACxC,KAAK3H,KAAL,CAAWc,KAAX,E;;;AACAqH,gBAAAA,K,GAAQ,KAAKnG,UAAL,IAAmB,KAAKA,UAAL,CAAgB+F,OAAhB,C;mDAC1B,KAAK/H,KAAL,CAAWoI,QAAX,CAAoBD,KAApB,EAA2BhG,KAA3B,EAAkCwF,GAAlC,C","sourcesContent":["import AbortablePromiseCache from 'abortable-promise-cache'\nimport BAI from './bai'\nimport CSI from './csi'\nimport Chunk from './chunk'\nimport crc32 from 'buffer-crc32'\n\nimport { unzip, unzipChunkSlice } from '@gmod/bgzf-filehandle'\n\nimport entries from 'object.entries-ponyfill'\nimport LRU from 'quick-lru'\nimport { LocalFile, RemoteFile, GenericFilehandle } from 'generic-filehandle'\nimport BAMFeature from './record'\nimport IndexFile from './indexFile'\nimport { parseHeaderText } from './sam'\nimport { abortBreakPoint, checkAbortSignal, timeout, makeOpts, BamOpts, BaseOpts } from './util'\n\nexport const BAM_MAGIC = 21840194\n\nconst blockLen = 1 << 16\n\nexport default class BamFile {\n  private renameRefSeq: (a: string) => string\n  private bam: GenericFilehandle\n  private index: IndexFile\n  private chunkSizeLimit: number\n  private fetchSizeLimit: number\n  private header: any\n  protected featureCache: any\n  protected chrToIndex: any\n  protected indexToChr: any\n  private yieldThreadTime: number\n\n  /**\n   * @param {object} args\n   * @param {string} [args.bamPath]\n   * @param {FileHandle} [args.bamFilehandle]\n   * @param {string} [args.baiPath]\n   * @param {FileHandle} [args.baiFilehandle]\n   */\n  constructor({\n    bamFilehandle,\n    bamPath,\n    bamUrl,\n    baiPath,\n    baiFilehandle,\n    baiUrl,\n    csiPath,\n    csiFilehandle,\n    csiUrl,\n    cacheSize,\n    fetchSizeLimit,\n    chunkSizeLimit,\n    yieldThreadTime = 100,\n    renameRefSeqs = n => n,\n  }: {\n    bamFilehandle?: GenericFilehandle\n    bamPath?: string\n    bamUrl?: string\n    baiPath?: string\n    baiFilehandle?: GenericFilehandle\n    baiUrl?: string\n    csiPath?: string\n    csiFilehandle?: GenericFilehandle\n    csiUrl?: string\n    cacheSize?: number\n    fetchSizeLimit?: number\n    chunkSizeLimit?: number\n    renameRefSeqs?: (a: string) => string\n    yieldThreadTime?: number\n  }) {\n    this.renameRefSeq = renameRefSeqs\n\n    if (bamFilehandle) {\n      this.bam = bamFilehandle\n    } else if (bamPath) {\n      this.bam = new LocalFile(bamPath)\n    } else if (bamUrl) {\n      this.bam = new RemoteFile(bamUrl)\n    } else {\n      throw new Error('unable to initialize bam')\n    }\n    if (csiFilehandle) {\n      this.index = new CSI({ filehandle: csiFilehandle })\n    } else if (csiPath) {\n      this.index = new CSI({ filehandle: new LocalFile(csiPath) })\n    } else if (csiUrl) {\n      this.index = new CSI({ filehandle: new RemoteFile(csiUrl) })\n    } else if (baiFilehandle) {\n      this.index = new BAI({ filehandle: baiFilehandle })\n    } else if (baiPath) {\n      this.index = new BAI({ filehandle: new LocalFile(baiPath) })\n    } else if (baiUrl) {\n      this.index = new BAI({ filehandle: new RemoteFile(baiUrl) })\n    } else if (bamPath) {\n      this.index = new BAI({ filehandle: new LocalFile(`${bamPath}.bai`) })\n    } else if (bamUrl) {\n      this.index = new BAI({ filehandle: new RemoteFile(`${bamUrl}.bai`) })\n    } else {\n      throw new Error('unable to infer index format')\n    }\n    this.featureCache = new AbortablePromiseCache({\n      cache: new LRU({\n        maxSize: cacheSize !== undefined ? cacheSize : 50,\n      }),\n      fill: this._readChunk.bind(this),\n    })\n    this.fetchSizeLimit = fetchSizeLimit || 500000000 // 500MB\n    this.chunkSizeLimit = chunkSizeLimit || 300000000 // 300MB\n    this.yieldThreadTime = yieldThreadTime\n  }\n\n  async getHeader(origOpts: AbortSignal | BaseOpts = {}) {\n    const opts = makeOpts(origOpts)\n    const indexData = await this.index.parse(opts)\n    const ret = indexData.firstDataLine ? indexData.firstDataLine.blockPosition + 65535 : undefined\n    let buffer\n    if (ret) {\n      const res = await this.bam.read(Buffer.alloc(ret + blockLen), 0, ret + blockLen, 0, opts)\n\n      const { bytesRead } = res\n      ;({ buffer } = res)\n      if (!bytesRead) {\n        throw new Error('Error reading header')\n      }\n      if (bytesRead < ret) {\n        buffer = buffer.slice(0, bytesRead)\n      } else {\n        buffer = buffer.slice(0, ret)\n      }\n    } else {\n      buffer = (await this.bam.readFile(opts)) as Buffer\n    }\n\n    const uncba = await unzip(buffer)\n\n    if (uncba.readInt32LE(0) !== BAM_MAGIC) {\n      throw new Error('Not a BAM file')\n    }\n    const headLen = uncba.readInt32LE(4)\n\n    this.header = uncba.toString('utf8', 8, 8 + headLen)\n    const { chrToIndex, indexToChr } = await this._readRefSeqs(headLen + 8, 65535, opts)\n    this.chrToIndex = chrToIndex\n    this.indexToChr = indexToChr\n\n    return parseHeaderText(this.header)\n  }\n\n  async getHeaderText(opts: BaseOpts = {}) {\n    await this.getHeader(opts)\n    return this.header\n  }\n\n  // the full length of the refseq block is not given in advance so this grabs a chunk and\n  // doubles it if all refseqs haven't been processed\n  async _readRefSeqs(\n    start: number,\n    refSeqBytes: number,\n    opts: BaseOpts = {},\n  ): Promise<{\n    chrToIndex: { [key: string]: number }\n    indexToChr: { refName: string; length: number }[]\n  }> {\n    if (start > refSeqBytes) {\n      return this._readRefSeqs(start, refSeqBytes * 2, opts)\n    }\n    const res = await this.bam.read(Buffer.alloc(refSeqBytes + blockLen), 0, refSeqBytes, 0, opts)\n    const { bytesRead } = res\n    let { buffer } = res\n    if (!bytesRead) {\n      throw new Error('Error reading refseqs from header')\n    }\n    if (bytesRead < refSeqBytes) {\n      buffer = buffer.slice(0, bytesRead)\n    } else {\n      buffer = buffer.slice(0, refSeqBytes)\n    }\n    const uncba = await unzip(buffer)\n    const nRef = uncba.readInt32LE(start)\n    let p = start + 4\n    const chrToIndex: { [key: string]: number } = {}\n    const indexToChr: { refName: string; length: number }[] = []\n    for (let i = 0; i < nRef; i += 1) {\n      await abortBreakPoint(opts.signal)\n      const lName = uncba.readInt32LE(p)\n      let refName = uncba.toString('utf8', p + 4, p + 4 + lName - 1)\n      refName = this.renameRefSeq(refName)\n      const lRef = uncba.readInt32LE(p + lName + 4)\n\n      chrToIndex[refName] = i\n      indexToChr.push({ refName, length: lRef })\n\n      p = p + 8 + lName\n      if (p > uncba.length) {\n        console.warn(`BAM header is very big.  Re-fetching ${refSeqBytes} bytes.`)\n        return this._readRefSeqs(start, refSeqBytes * 2, opts)\n      }\n    }\n    return { chrToIndex, indexToChr }\n  }\n\n  async getRecordsForRange(\n    chr: string,\n    min: number,\n    max: number,\n    opts: BamOpts = { viewAsPairs: false, pairAcrossChr: false, maxInsertSize: 200000 },\n  ) {\n    let records: BAMFeature[] = []\n    for await (const chunk of this.streamRecordsForRange(chr, min, max, opts)) {\n      records = records.concat(chunk)\n    }\n    return records\n  }\n\n  async *streamRecordsForRange(\n    chr: string,\n    min: number,\n    max: number,\n    opts: BamOpts = { viewAsPairs: false, pairAcrossChr: false, maxInsertSize: 200000 },\n  ) {\n    // todo regularize refseq names\n    opts.viewAsPairs = opts.viewAsPairs || false\n    opts.pairAcrossChr = opts.pairAcrossChr || false\n    opts.maxInsertSize = opts.maxInsertSize !== undefined ? opts.maxInsertSize : 200000\n    const chrId = this.chrToIndex && this.chrToIndex[chr]\n    let chunks: Chunk[]\n    if (!(chrId >= 0)) {\n      chunks = []\n    } else {\n      chunks = await this.index.blocksForRange(chrId, min - 1, max, opts)\n\n      if (!chunks) {\n        throw new Error('Error in index fetch')\n      }\n    }\n\n    for (let i = 0; i < chunks.length; i += 1) {\n      await abortBreakPoint(opts.signal)\n      const size = chunks[i].fetchedSize()\n      if (size > this.chunkSizeLimit) {\n        throw new Error(\n          `Too many BAM features. BAM chunk size ${size} bytes exceeds chunkSizeLimit of ${this.chunkSizeLimit}`,\n        )\n      }\n    }\n\n    const totalSize = chunks\n      .map((s: Chunk) => s.fetchedSize())\n      .reduce((a: number, b: number) => a + b, 0)\n    if (totalSize > this.fetchSizeLimit) {\n      throw new Error(\n        `data size of ${totalSize.toLocaleString()} bytes exceeded fetch size limit of ${this.fetchSizeLimit.toLocaleString()} bytes`,\n      )\n    }\n    yield* this._fetchChunkFeatures(chunks, chrId, min, max, opts)\n  }\n\n  async *_fetchChunkFeatures(\n    chunks: Chunk[],\n    chrId: number,\n    min: number,\n    max: number,\n    opts: BamOpts,\n  ) {\n    const featPromises = []\n    let done = false\n\n    for (let i = 0; i < chunks.length; i++) {\n      const c = chunks[i]\n      const { data, cpositions, dpositions, chunk } = await this.featureCache.get(\n        c.toString(),\n        { chunk: c, opts },\n        opts.signal,\n      )\n      const promise = this.readBamFeatures(data, cpositions, dpositions, chunk).then(records => {\n        const recs = []\n        for (let i = 0; i < records.length; i += 1) {\n          const feature = records[i]\n          if (feature.seq_id() === chrId) {\n            if (feature.get('start') >= max) {\n              // past end of range, can stop iterating\n              done = true\n              break\n            } else if (feature.get('end') >= min) {\n              // must be in range\n              recs.push(feature)\n            }\n          }\n        }\n        return recs\n      })\n      featPromises.push(promise)\n      await promise\n      if (done) {\n        break\n      }\n    }\n\n    checkAbortSignal(opts.signal)\n\n    for (let i = 0; i < featPromises.length; i++) {\n      yield featPromises[i]\n    }\n    checkAbortSignal(opts.signal)\n    if (opts.viewAsPairs) {\n      yield this.fetchPairs(chrId, featPromises, opts)\n    }\n  }\n\n  async fetchPairs(chrId: number, featPromises: Promise<BAMFeature[]>[], opts: BamOpts) {\n    const unmatedPairs: { [key: string]: boolean } = {}\n    const readIds: { [key: string]: number } = {}\n    await Promise.all(\n      featPromises.map(async f => {\n        const ret = await f\n        const readNames: { [key: string]: number } = {}\n        for (let i = 0; i < ret.length; i++) {\n          const name = ret[i].name()\n          const id = ret[i].id()\n          if (!readNames[name]) {\n            readNames[name] = 0\n          }\n          readNames[name]++\n          readIds[id] = 1\n        }\n        entries(readNames).forEach(([k, v]: [string, number]) => {\n          if (v === 1) {\n            unmatedPairs[k] = true\n          }\n        })\n      }),\n    )\n\n    const matePromises: Promise<Chunk[]>[] = []\n    await Promise.all(\n      featPromises.map(async f => {\n        const ret = await f\n        for (let i = 0; i < ret.length; i++) {\n          const name = ret[i].name()\n          if (\n            unmatedPairs[name] &&\n            (opts.pairAcrossChr ||\n              (ret[i]._next_refid() === chrId &&\n                Math.abs(ret[i].get('start') - ret[i]._next_pos()) <\n                  (opts.maxInsertSize || 200000)))\n          ) {\n            matePromises.push(\n              this.index.blocksForRange(\n                ret[i]._next_refid(),\n                ret[i]._next_pos(),\n                ret[i]._next_pos() + 1,\n                opts,\n              ),\n            )\n          }\n        }\n      }),\n    )\n\n    const mateBlocks = await Promise.all(matePromises)\n    let mateChunks: Chunk[] = []\n    for (let i = 0; i < mateBlocks.length; i++) {\n      mateChunks = mateChunks.concat(mateBlocks[i])\n    }\n    // filter out duplicate chunks (the blocks are lists of chunks, blocks are concatenated, then filter dup chunks)\n    mateChunks = mateChunks\n      .sort()\n      .filter((item, pos, ary) => !pos || item.toString() !== ary[pos - 1].toString())\n\n    const mateTotalSize = mateChunks.map(s => s.fetchedSize()).reduce((a, b) => a + b, 0)\n    if (mateTotalSize > this.fetchSizeLimit) {\n      throw new Error(\n        `data size of ${mateTotalSize.toLocaleString()} bytes exceeded fetch size limit of ${this.fetchSizeLimit.toLocaleString()} bytes`,\n      )\n    }\n    const mateFeatPromises = mateChunks.map(async c => {\n      const { data, cpositions, dpositions, chunk } = await this.featureCache.get(\n        c.toString(),\n        { chunk: c, opts },\n        opts.signal,\n      )\n      const feats = await this.readBamFeatures(data, cpositions, dpositions, chunk)\n      const mateRecs = []\n      for (let i = 0; i < feats.length; i += 1) {\n        const feature = feats[i]\n        if (unmatedPairs[feature.get('name')] && !readIds[feature.id()]) {\n          mateRecs.push(feature)\n        }\n      }\n      return mateRecs\n    })\n    const newMateFeats = await Promise.all(mateFeatPromises)\n    let featuresRet: BAMFeature[] = []\n    if (newMateFeats.length) {\n      const newMates = newMateFeats.reduce((result, current) => result.concat(current))\n      featuresRet = featuresRet.concat(newMates)\n    }\n    return featuresRet\n  }\n\n  async _readChunk({ chunk, opts }: { chunk: unknown; opts: BaseOpts }, abortSignal?: AbortSignal) {\n    const c = chunk as Chunk\n    const bufsize = c.fetchedSize()\n    const res = await this.bam.read(Buffer.alloc(bufsize), 0, bufsize, c.minv.blockPosition, opts)\n    const { bytesRead } = res\n    let { buffer } = res\n    checkAbortSignal(abortSignal)\n    if (!bytesRead) {\n      return []\n    }\n    if (bytesRead < bufsize) {\n      buffer = buffer.slice(0, bytesRead)\n    } else {\n      buffer = buffer.slice(0, bufsize)\n    }\n\n    const { buffer: data, cpositions, dpositions } = await unzipChunkSlice(buffer, chunk)\n    checkAbortSignal(abortSignal)\n    return { data, cpositions, dpositions, chunk }\n  }\n\n  async readBamFeatures(ba: Buffer, cpositions: number[], dpositions: number[], chunk: Chunk) {\n    let blockStart = 0\n    const sink = []\n    let pos = 0\n    let last = +Date.now()\n\n    while (blockStart + 4 < ba.length) {\n      const blockSize = ba.readInt32LE(blockStart)\n      const blockEnd = blockStart + 4 + blockSize - 1\n\n      // increment position to the current decompressed status\n      if (dpositions) {\n        while (blockStart + chunk.minv.dataPosition >= dpositions[pos++]) {}\n        pos--\n      }\n\n      // only try to read the feature if we have all the bytes for it\n      if (blockEnd < ba.length) {\n        const feature = new BAMFeature({\n          bytes: {\n            byteArray: ba,\n            start: blockStart,\n            end: blockEnd,\n          },\n          // the below results in an automatically calculated file-offset based ID\n          // if the info for that is available, otherwise crc32 of the features\n          //\n          // cpositions[pos] refers to actual file offset of a bgzip block boundaries\n          //\n          // we multiply by (1 <<8) in order to make sure each block has a \"unique\"\n          // address space so that data in that block could never overlap\n          //\n          // then the blockStart-dpositions is an uncompressed file offset from\n          // that bgzip block boundary, and since the cpositions are multiplied by\n          // (1 << 8) these uncompressed offsets get a unique space\n          //\n          // this has an extra chunk.minv.dataPosition added on because it blockStart\n          // starts at 0 instead of chunk.minv.dataPosition\n          //\n          // the +1 is just to avoid any possible uniqueId 0 but this does not realistically happen\n          fileOffset: cpositions\n            ? cpositions[pos] * (1 << 8) +\n              (blockStart - dpositions[pos]) +\n              chunk.minv.dataPosition +\n              1\n            : crc32.signed(ba.slice(blockStart, blockEnd)),\n        })\n\n        sink.push(feature)\n        if (this.yieldThreadTime && +Date.now() - last > this.yieldThreadTime) {\n          await timeout(1)\n          last = +Date.now()\n        }\n      }\n\n      blockStart = blockEnd + 1\n    }\n    return sink\n  }\n\n  async hasRefSeq(seqName: string) {\n    const refId = this.chrToIndex && this.chrToIndex[seqName]\n    return this.index.hasRefSeq(refId)\n  }\n\n  async lineCount(seqName: string) {\n    const refId = this.chrToIndex && this.chrToIndex[seqName]\n    return this.index.lineCount(refId)\n  }\n\n  async indexCov(seqName: string, start?: number, end?: number) {\n    await this.index.parse()\n    const seqId = this.chrToIndex && this.chrToIndex[seqName]\n    return this.index.indexCov(seqId, start, end)\n  }\n}\n"]}
|
|
695
|
+
//# sourceMappingURL=bamFile.js.map
|