@gmod/bam 1.1.17 → 2.0.0

package/dist/nullIndex.js

@@ -0,0 +1,33 @@
+"use strict";
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const indexFile_1 = __importDefault(require("./indexFile"));
+class NullIndex extends indexFile_1.default {
+    lineCount() {
+        throw new Error('never called');
+    }
+    _parse() {
+        throw new Error('never called');
+    }
+    indexCov() {
+        return __awaiter(this, void 0, void 0, function* () {
+            throw new Error('never called');
+        });
+    }
+    blocksForRange() {
+        throw new Error('never called');
+    }
+}
+exports.default = NullIndex;
+//# sourceMappingURL=nullIndex.js.map

package/dist/nullIndex.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"nullIndex.js","sourceRoot":"","sources":["../src/nullIndex.ts"],"names":[],"mappings":";;;;;;;;;;;;;;AAAA,4DAAmC;AAEnC,MAAqB,SAAU,SAAQ,mBAAS;IACvC,SAAS;QACd,MAAM,IAAI,KAAK,CAAC,cAAc,CAAC,CAAA;IACjC,CAAC;IACS,MAAM;QACd,MAAM,IAAI,KAAK,CAAC,cAAc,CAAC,CAAA;IACjC,CAAC;IAEY,QAAQ;;YACnB,MAAM,IAAI,KAAK,CAAC,cAAc,CAAC,CAAA;QACjC,CAAC;KAAA;IAEM,cAAc;QACnB,MAAM,IAAI,KAAK,CAAC,cAAc,CAAC,CAAA;IACjC,CAAC;CACF;AAfD,4BAeC"}

package/dist/record.d.ts

@@ -17,7 +17,7 @@ export default class BamRecord {
     seq_id(): number;
     _get(field: string): any;
     _tags(): string[];
-    parent(): undefined;
+    parent(): void;
     children(): any;
     id(): number;
     /**
@@ -75,7 +75,7 @@ export default class BamRecord {
     _seq_bytes(): number;
     getReadBases(): string;
     seq(): string;
-    getPairOrientation(): string | null;
+    getPairOrientation(): string;
     _bin_mq_nl(): number;
     _flag_nc(): number;
     seq_length(): number;