@glion/util-query 0.25.0 → 0.27.0
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- package/LICENSE +1 -1
- package/README.md +90 -65
- package/dist/errors.d.ts +25 -0
- package/dist/errors.d.ts.map +1 -0
- package/dist/format.d.ts +9 -8
- package/dist/format.d.ts.map +1 -1
- package/dist/index.d.ts +1 -1
- package/dist/index.d.ts.map +1 -1
- package/dist/index.js +306 -584
- package/dist/index.js.map +1 -1
- package/dist/matches.d.ts +8 -8
- package/dist/matches.d.ts.map +1 -1
- package/dist/parse.d.ts +3 -5
- package/dist/parse.d.ts.map +1 -1
- package/dist/resolve.d.ts +27 -0
- package/dist/resolve.d.ts.map +1 -0
- package/dist/select.d.ts +28 -31
- package/dist/select.d.ts.map +1 -1
- package/dist/types.d.ts +23 -29
- package/dist/types.d.ts.map +1 -1
- package/dist/value.d.ts +9 -7
- package/dist/value.d.ts.map +1 -1
- package/package.json +5 -5
- package/dist/set.d.ts +0 -35
- package/dist/set.d.ts.map +0 -1
- package/dist/utils.d.ts +0 -33
- package/dist/utils.d.ts.map +0 -1
package/LICENSE
CHANGED
package/README.md
CHANGED
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@@ -1,10 +1,10 @@
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# @glion/util-query
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Reads HL7v2 ASTs using canonical paths like `PID
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Reads HL7v2 ASTs using canonical paths like `PID.5[1].2.1` or `ORDER.ORC.1`.
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## What it does
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Provides six path-based helpers — `parse`, `select`, `selectAll`, `value`, `matches`, `format` — that operate on HL7v2 AST trees using the
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Provides six path-based helpers — `parse`, `select`, `selectAll`, `value`, `matches`, `format` — that operate on HL7v2 AST trees using dotted paths: segment groups, the segment, and the field are each separated with `.`, so HL7 element `PID-5.1` is the path `PID.5.1`. Paths can address segments (`PID`), groups (`ORDER`), nested groups and segments (`ORDER.TIMING.TQ1`), field repetitions (`PID.5[2]`), components (`PID.5[1].2`), and subcomponents (`PID.5[1].2.1`).
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## Install
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@@ -32,8 +32,8 @@ OBX|1||8675-3^Glucose^LN||120|mg/dL|70-105|H|||F`;
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const ast = parseHL7v2(message);
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// Values: drills to subcomponents automatically when the path is unique
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const lastName = value(ast, "PID
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const sendingApp = value(ast, "MSH
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const lastName = value(ast, "PID.5[1].1.1"); // "Smith"
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const sendingApp = value(ast, "MSH.3[1].1.1"); // "MyApp"
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// Single node: grab the first matching AST node
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const pidSegment = select(ast, "PID");
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@@ -48,22 +48,22 @@ for (const { node } of allObservations) {
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}
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// Existence check
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if (matches(ast, "PID
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if (matches(ast, "PID.5")) {
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console.log("Patient has a name field");
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}
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// Path parsing
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const parsed = parse("ORDERS[2]
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const parsed = parse("ORDERS[2].OBX.5[1].2.1");
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```
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## API
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### `parse(path: string): PathParts`
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Breaks a canonical HL7 path into structured pieces.
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Breaks a canonical HL7 path into structured pieces.
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```typescript
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parse("PID
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parse("PID.5[1].2.1");
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// {
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// segment: { name: 'PID' },
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// field: 5,
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// }
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```
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`parse`
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`parse` returns a new `PathParts` on every call.
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### `select<Path>(
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### `select<Path>(node: Root | Group | Segment, path: Path): { node: InferNodeType<Path>; ancestors: Nodes[] } | null`
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Returns the
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Returns the node the path addresses under `node`, along with its ancestor chain, or `null` when it cannot be found. `node` is a message, a group, or a segment; a path read from a segment starts with the field. A step without `[n]` names the first child with that name, so `select` returns `null` when that child does not lead to a match, even if a later one does. The return type is inferred from the path string.
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```typescript
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const result = select(ast, "PID
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const result = select(ast, "PID.5[1].2");
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if (result) {
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result.node; // Type: Component
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result.ancestors; // [Root, Segment, Field, FieldRepetition]
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}
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select(pid, "5[1].2"); // the same component, read from the PID segment
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```
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The `ancestors` array follows the [`unist-util-visit-parents`](https://github.com/syntax-tree/unist-util-visit-parents) convention: it starts at the
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The `ancestors` array follows the [`unist-util-visit-parents`](https://github.com/syntax-tree/unist-util-visit-parents) convention: it starts at the node passed to `select`, ends with the immediate parent, and never includes the node itself. You can rely on `ancestors[ancestors.length - 1]` being the direct parent.
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### `selectAll<Path>(
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### `selectAll<Path>(node: Root | Group | Segment, path: Path): Array<{ node: InferNodeType<Path>; ancestors: Nodes[] }>`
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Returns
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Returns every node the path addresses under `node`, in document order. `node` is a message, a group, or a segment, as in `select`.
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```typescript
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// Get all OBX segments
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}
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// Get all observation values
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const values = selectAll(ast, "OBX
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const values = selectAll(ast, "OBX.5");
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for (const { node } of values) {
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console.log(node.type); // 'field'
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}
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```
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### `value(
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### `value(node: Root | Group | Segment, path: string): { value: string | null; node: Nodes; ancestors: Nodes[] } | null`
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Returns the string value stored at the path. If the node is not a subcomponent, it walks through single-child layers (field → field repetition → component → subcomponent) automatically.
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Returns the string value stored at the path under `node`, a message, a group, or a segment. If the node is not a subcomponent, it walks through single-child layers (field → field repetition → component → subcomponent) automatically.
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```typescript
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const result = value(ast, "PID
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const result = value(ast, "PID.3[1].1.1");
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if (result) {
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console.log(result.value); // "123456789"
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console.log(result.node.type); // "subcomponent"
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console.log(result.ancestors); // [Root, Segment, Field, ...]
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}
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value(pid, "3[1].1.1")?.value; // "123456789", read from the PID segment
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```
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### `matches(
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### `matches(node: Root | Group | Segment, path: string): boolean`
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Returns `true` when
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Returns `true` when `select` finds a node at the path under `node`, otherwise `false`.
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```typescript
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if (!matches(ast, "OBX
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if (!matches(ast, "OBX.5")) {
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throw new Error("Missing observation value");
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}
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if (matches(ast, "PID
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const name = value(ast, "PID
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if (matches(ast, "PID.5")) {
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const name = value(ast, "PID.5.1.1");
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}
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```
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```typescript
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// With select
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const result = select(ast, "PID
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const result = select(ast, "PID.5.2");
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if (result) {
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format(result.node, result.ancestors); // "PID
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format(result.node, result.ancestors); // "PID.5.2"
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}
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// With visit
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visit(ast, "field", (node, ancestors) => {
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const path = format(node, ancestors); // "PID
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const path = format(node, ancestors); // "PID.5", "OBX.1", etc.
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console.log(`Visiting ${path}`);
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});
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//
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// select(root, format(node, ancestors)) returns node
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```
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### `
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### `delimiters(root: Root): Delimiters`
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Returns the message's delimiters, read from MSH-1 and MSH-2, with the HL7v2 defaults for any character the message does not give.
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```typescript
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delimiters(ast); // { field: "|", component: "^", repetition: "~", escape: "\\", subcomponent: "&", … }
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```
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### `QueryError`
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Every function that takes a path throws a `QueryError` when it cannot read the path; `path` carries the path.
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| `code` | Cause |
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| -------------- | ------------------------------------------ |
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| `EMPTY_PATH` | The path is empty. |
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| `INVALID_PATH` | The path does not follow the path grammar. |
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```typescript
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import { QueryError } from "@glion/util-query";
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try {
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select(ast, userPath);
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} catch (error) {
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if (error instanceof QueryError && error.code === "INVALID_PATH") {
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// userPath is not a path; error.path holds it
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}
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}
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```
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### Types
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```typescript
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type PathParts = {
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groups?: Array<{ name: string; repetition?: number }>;
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segment
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segment?: { name: string; repetition?: number };
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field?: number;
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repetition?: number;
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Canonical path grammar:
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- `SEGMENT` — segment (e.g., `PID`)
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- `SEGMENT
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- `SEGMENT
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- `SEGMENT
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- `SEGMENT
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- `SEGMENT.FIELD` — field (e.g., `PID.5`)
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- `SEGMENT.FIELD[REP]` — field repetition (e.g., `PID.5[2]`)
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- `SEGMENT.FIELD[REP].COMP` — component (e.g., `PID.5[1].2`)
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- `SEGMENT.FIELD[REP].COMP.SUB` — subcomponent (e.g., `PID.5[1].2.1`)
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- `GROUP[N].` — qualify with group ID and optional repetition (e.g., `PATIENT_RESULT.ORDER_OBSERVATION[2].OBR.4`)
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- `FIELD[REP].COMP.SUB` — the same steps without the segment, read from a segment (e.g., `5[1].2.1`)
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Every step of a path is separated with `.`. A name starts with a letter and a field is a number, so the first numeric step is the field: in `ORDER.OBR.5.1`, `ORDER` is a group, `OBR` the segment, `5` the field, and `1` the component. Positions count from 1. A string that does not follow this grammar, such as `PID-5.1`, `PID.0`, or `" PID"`, throws `INVALID_PATH`.
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A segment name or group ID is an uppercase letter followed by uppercase letters, digits, and underscores, such as `PID` or `PATIENT_RESULT`. A path names a group by its `id`, not its `name`: a group with ID `PATIENT_VISIT` and name `Patient Visit` is `PATIENT_VISIT`.
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Repetition indexes are **1-based**. If you omit `[n]`, `select`/`value`/`matches`
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Repetition indexes are **1-based**. If you omit `[n]`, `select`/`value`/`matches` take the first child with that name at that step, and `selectAll` takes every one. In a message whose first `ORDER` has no `OBX` and whose second has one, `select(ast, "ORDER.OBX")` returns `null` and `selectAll(ast, "ORDER.OBX")` returns the second `ORDER`'s `OBX`; `ORDER[2].OBX` selects it.
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Every step names a direct child of the node before it, and the first step names a direct child of the node the path is read from: a message or a group holds segments and groups, and a segment holds fields, so a path read from a segment starts with the field. A path that starts with the field finds nothing in a message or a group, and a path that starts with a name finds nothing in a segment. `ORDER.ORC` is an `ORC` directly inside an `ORDER` group directly under the message; an `ORC` nested deeper is not matched. A path to a node inside a group therefore names every group from the message down: in an `ORU_R01` grouped by `@glion/transform-profile-groups`, the patient is `PATIENT_RESULT.PATIENT.PID` and an observation is `PATIENT_RESULT.ORDER_OBSERVATION.OBSERVATION.OBX`.
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A path's meaning depends on the tree's grouping. On a flat tree, as the parser produces it, every segment is a direct child of the message, so `PID.3` and `OBX[2].5` match. After grouping, only segments left at the top level, such as `MSH`, match by name alone; `PID.3` returns `null` until the path names `PID`'s groups.
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`[n]` counts the direct children with that name, segments and groups together: in `[MSH, PID, OBX, PID]`, the second `PID` is `PID[2]`, and a group `ZZZ` after a segment `ZZZ` is `ZZZ[2]`. A step without a field number matches a segment or a group; a field number matches only a segment.
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`format(node, ancestors)` returns the path that `select` resolves back to `node`.
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```typescript
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// Selecting
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// Selecting a top-level group
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const orderGroup = select(ast, "ORDER");
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if (orderGroup?.node.type === "group") {
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console.log("Found ORDER group");
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}
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// Navigation through groups to segments
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value(ast, "ORDER
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value(ast, "ORDER
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value(ast, "ORDER.ORC.1"); // Order control
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value(ast, "ORDER.TIMING.TQ1.1"); // Timing quantity
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```
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## Common recipes
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### Patient demographics
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```typescript
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const lastName = value(ast, "PID
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const firstName = value(ast, "PID
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const middleName = value(ast, "PID
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const dob = value(ast, "PID
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const lastName = value(ast, "PID.5[1].1.1")?.value;
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const firstName = value(ast, "PID.5[1].2.1")?.value;
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const middleName = value(ast, "PID.5[1].3.1")?.value;
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const dob = value(ast, "PID.7[1].1.1")?.value;
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```
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### Observations
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```typescript
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import { selectAll, value } from "@glion/util-query";
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268
|
+
|
|
237
269
|
// Single observation
|
|
238
|
-
const obsValue = value(ast, "OBX
|
|
239
|
-
const units = value(ast, "OBX
|
|
240
|
-
const refRange = value(ast, "OBX
|
|
241
|
-
|
|
242
|
-
// Multiple observations
|
|
243
|
-
const
|
|
244
|
-
|
|
245
|
-
const
|
|
246
|
-
const u = value(node, "OBX-6")?.value;
|
|
270
|
+
const obsValue = value(ast, "OBX.5[1].1.1")?.value;
|
|
271
|
+
const units = value(ast, "OBX.6[1].1.1")?.value;
|
|
272
|
+
const refRange = value(ast, "OBX.7[1].1.1")?.value;
|
|
273
|
+
|
|
274
|
+
// Multiple observations: read each OBX from the segment
|
|
275
|
+
for (const { node: obx } of selectAll(ast, "OBX")) {
|
|
276
|
+
const val = value(obx, "5")?.value;
|
|
277
|
+
const u = value(obx, "6")?.value;
|
|
247
278
|
console.log(`${val} ${u}`);
|
|
248
279
|
}
|
|
249
280
|
```
|
|
@@ -252,7 +283,7 @@ for (const { node } of allOBX) {
|
|
|
252
283
|
|
|
253
284
|
```typescript
|
|
254
285
|
if (!matches(ast, "MSH")) throw new Error("Missing message header");
|
|
255
|
-
if (!matches(ast, "PID
|
|
286
|
+
if (!matches(ast, "PID.3[1].1.1")) throw new Error("Missing patient ID");
|
|
256
287
|
|
|
257
288
|
if (matches(ast, "OBX")) {
|
|
258
289
|
const observations = selectAll(ast, "OBX");
|
|
@@ -260,12 +291,6 @@ if (matches(ast, "OBX")) {
|
|
|
260
291
|
}
|
|
261
292
|
```
|
|
262
293
|
|
|
263
|
-
## Error messages
|
|
264
|
-
|
|
265
|
-
- Invalid formats throw with guidance, e.g. `"Invalid HL7 path format: \"PID-\""`.
|
|
266
|
-
- Out-of-range indexes throw, e.g. `"Field number must be ≥1, got: 0"`.
|
|
267
|
-
- Whitespace is rejected to catch accidental typos.
|
|
268
|
-
|
|
269
294
|
## Part of Glion
|
|
270
295
|
|
|
271
296
|
`@glion/util-query` is part of **[Glion]**, the application framework for HL7v2. See the [Glion README] for the full package catalog and architecture.
|
package/dist/errors.d.ts
ADDED
|
@@ -0,0 +1,25 @@
|
|
|
1
|
+
/**
|
|
2
|
+
* The typed failure for `@glion/util-query`. Branch on `code`; each code is
|
|
3
|
+
* one cause.
|
|
4
|
+
*
|
|
5
|
+
* @module
|
|
6
|
+
*/
|
|
7
|
+
/**
|
|
8
|
+
* Machine-readable codes for what a path got wrong:
|
|
9
|
+
*
|
|
10
|
+
* - `EMPTY_PATH` — the path is empty.
|
|
11
|
+
* - `INVALID_PATH` — the path does not follow the path grammar.
|
|
12
|
+
*/
|
|
13
|
+
export declare const QueryErrorCode: {
|
|
14
|
+
readonly EMPTY_PATH: "EMPTY_PATH";
|
|
15
|
+
readonly INVALID_PATH: "INVALID_PATH";
|
|
16
|
+
};
|
|
17
|
+
export type QueryErrorCode = (typeof QueryErrorCode)[keyof typeof QueryErrorCode];
|
|
18
|
+
/** A path that `@glion/util-query` cannot read. */
|
|
19
|
+
export declare class QueryError extends Error {
|
|
20
|
+
readonly name = "QueryError";
|
|
21
|
+
readonly code: QueryErrorCode;
|
|
22
|
+
readonly path: string;
|
|
23
|
+
constructor(code: QueryErrorCode, path: string);
|
|
24
|
+
}
|
|
25
|
+
//# sourceMappingURL=errors.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"errors.d.ts","sourceRoot":"","sources":["../src/errors.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH;;;;;GAKG;AACH,eAAO,MAAM,cAAc;;;CAGjB,CAAC;AAEX,MAAM,MAAM,cAAc,GACxB,CAAC,OAAO,cAAc,CAAC,CAAC,MAAM,OAAO,cAAc,CAAC,CAAC;AAavD,mDAAmD;AACnD,qBAAa,UAAW,SAAQ,KAAK;IACnC,SAAkB,IAAI,gBAAgB;IACtC,QAAQ,CAAC,IAAI,EAAE,cAAc,CAAC;IAC9B,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;gBAEV,IAAI,EAAE,cAAc,EAAE,IAAI,EAAE,MAAM;CAK/C"}
|
package/dist/format.d.ts
CHANGED
|
@@ -2,25 +2,26 @@ import type { Nodes } from "@glion/ast";
|
|
|
2
2
|
/**
|
|
3
3
|
* Format a node and its ancestor chain into a canonical HL7v2 path string.
|
|
4
4
|
*
|
|
5
|
-
*
|
|
6
|
-
*
|
|
7
|
-
*
|
|
5
|
+
* When `ancestors` starts at the root, `select(root, path)` returns `node`:
|
|
6
|
+
* the path names every group, and `[n]` counts the siblings with the same
|
|
7
|
+
* name, segments and groups together.
|
|
8
8
|
*
|
|
9
9
|
* @example
|
|
10
10
|
* ```typescript
|
|
11
11
|
* visit(tree, "field", (node, ancestors) => {
|
|
12
|
-
* format(node, ancestors); // "PID
|
|
12
|
+
* format(node, ancestors); // "PID.5"
|
|
13
13
|
* });
|
|
14
14
|
*
|
|
15
|
-
* const result = select(root, "PID
|
|
16
|
-
* format(result.node, result.ancestors); // "PID
|
|
15
|
+
* const result = select(root, "PID.5.2");
|
|
16
|
+
* format(result.node, result.ancestors); // "PID.5.2"
|
|
17
17
|
* ```;
|
|
18
18
|
*
|
|
19
19
|
* @param node - The target AST node
|
|
20
20
|
* @param ancestors - Ancestor chain from root to parent (as provided by
|
|
21
21
|
* visit/select)
|
|
22
|
-
* @returns Canonical path string (e.g., "PID
|
|
23
|
-
* ancestor chain contains no segment or group
|
|
22
|
+
* @returns Canonical path string (e.g., "PID.5.2", "ORDER.ORC.1"), or `null` if the
|
|
23
|
+
* ancestor chain contains no segment or group, or an ancestor does not
|
|
24
|
+
* hold the next node in the chain
|
|
24
25
|
*/
|
|
25
26
|
export declare function format(node: Nodes, ancestors: Nodes[]): string | null;
|
|
26
27
|
//# sourceMappingURL=format.d.ts.map
|
package/dist/format.d.ts.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"format.d.ts","sourceRoot":"","sources":["../src/format.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAS,KAAK,
|
|
1
|
+
{"version":3,"file":"format.d.ts","sourceRoot":"","sources":["../src/format.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAS,KAAK,EAAiB,MAAM,YAAY,CAAC;AAI9D;;;;;;;;;;;;;;;;;;;;;;;GAuBG;AACH,wBAAgB,MAAM,CAAC,IAAI,EAAE,KAAK,EAAE,SAAS,EAAE,KAAK,EAAE,GAAG,MAAM,GAAG,IAAI,CAqCrE"}
|
package/dist/index.d.ts
CHANGED
|
@@ -1,9 +1,9 @@
|
|
|
1
1
|
export { delimiters } from "./delimiters";
|
|
2
|
+
export { QueryError, QueryErrorCode } from "./errors";
|
|
2
3
|
export { format } from "./format";
|
|
3
4
|
export { matches } from "./matches";
|
|
4
5
|
export { parse } from "./parse";
|
|
5
6
|
export { select, selectAll } from "./select";
|
|
6
|
-
export { set } from "./set";
|
|
7
7
|
export type { GroupLocator, InferNodeType, PathParts, SegmentLocator, } from "./types";
|
|
8
8
|
export { value } from "./value";
|
|
9
9
|
//# sourceMappingURL=index.d.ts.map
|
package/dist/index.d.ts.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"
|
|
1
|
+
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,cAAc,CAAC;AAC1C,OAAO,EAAE,UAAU,EAAE,cAAc,EAAE,MAAM,UAAU,CAAC;AACtD,OAAO,EAAE,MAAM,EAAE,MAAM,UAAU,CAAC;AAClC,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AACpC,OAAO,EAAE,KAAK,EAAE,MAAM,SAAS,CAAC;AAChC,OAAO,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,UAAU,CAAC;AAC7C,YAAY,EACV,YAAY,EACZ,aAAa,EACb,SAAS,EACT,cAAc,GACf,MAAM,SAAS,CAAC;AACjB,OAAO,EAAE,KAAK,EAAE,MAAM,SAAS,CAAC"}
|