@gitwhy-cli/whyspec 0.1.13 → 0.1.15

package/README.md

@@ -29,21 +29,21 @@ In an era where AI writes most of the code, the human contribution isn't the syn
 ## See it in action
 
 ```
-You: /whyspec-plan add-jwt-auth
+You: /whyspec:plan add-jwt-auth
 AI:  Created .gitwhy/changes/add-jwt-auth/
      ✓ intent.md  — why this change exists
      ✓ design.md  — approach + 3 decisions to make
      ✓ tasks.md   — verification-first checklist
      Decision Bridge: 3 open questions to resolve.
 
-You: /whyspec-execute add-jwt-auth
+You: /whyspec:execute add-jwt-auth
 AI:  Implementing with full context...
      ✓ 1. Add token verification middleware
      ✓ 2. Create login endpoint with bcrypt
      ✓ 3. Wire up protected routes
      All tasks complete! 3 decisions resolved.
 
-You: /whyspec-capture add-jwt-auth
+You: /whyspec:capture add-jwt-auth
 AI:  Decision Bridge resolved:
      ✓ Token storage: httpOnly cookie (XSS > CSRF)
      ✓ Hashing: bcrypt (Node.js ecosystem)
@@ -62,7 +62,7 @@ npm install -g @gitwhy-cli/whyspec
 ```bash
 cd your-project
 whyspec init                        # Set up WhySpec
-# Then use /whyspec-plan in Claude Code or Cursor, or $whyspec-plan in Codex
+# Then use /whyspec:plan in Claude Code, /whyspec-plan in Cursor, or $whyspec-plan in Codex
 ```
 
 That's it. WhySpec teaches your AI agent to plan before coding and capture reasoning after.
@@ -81,7 +81,7 @@ That's it. WhySpec teaches your AI agent to plan before coding and capture reaso
 
 | AI Agent | Integration | How |
 |---------|------------|-----|
-| **Claude Code** | Native skills | `.claude/skills/whyspec-*/SKILL.md` |
+| **Claude Code** | Project commands + skills | `.claude/commands/whyspec:*.md` + `.claude/skills/whyspec-*/SKILL.md` |
 | **Cursor** | Slash commands | `.cursor/commands/whyspec-*.md` |
 | **Codex CLI** | Native skills + project instructions | `~/.codex/skills/whyspec-*` + `AGENTS.md` |
 | **GitHub Copilot** | Project instructions | `AGENTS.md` |

package/dist/adapters/claude-code.d.ts

@@ -10,4 +10,5 @@ import { GeneratedFile } from "./types.js";
  * @returns Array of GeneratedFile objects
  */
 export declare function generateClaudeCodeSkills(projectRoot?: string): GeneratedFile[];
+export declare function generateClaudeCodeCommands(projectRoot?: string): GeneratedFile[];
 //# sourceMappingURL=claude-code.d.ts.map

package/dist/adapters/claude-code.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"claude-code.d.ts","sourceRoot":"","sources":["../../src/adapters/claude-code.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,aAAa,EAKd,MAAM,YAAY,CAAC;AAyLpB;;;;;;;;;GASG;AACH,wBAAgB,wBAAwB,CACtC,WAAW,GAAE,MAAW,GACvB,aAAa,EAAE,CAmBjB;AAED,wBAAgB,0BAA0B,CACxC,WAAW,GAAE,MAAW,GACvB,aAAa,EAAE,CAqBjB"}

package/dist/adapters/claude-code.js

@@ -1,4 +1,4 @@
-import { WHYSPEC_COMMANDS, COMMAND_DESCRIPTIONS, } from "./types.js";
+import { WHYSPEC_COMMANDS, COMMAND_DESCRIPTIONS, COMMAND_ARGUMENT_HINTS, } from "./types.js";
 /**
  * Generate the placeholder instructions for each WhySpec command skill.
  * These are filled with real content by Agent 5 (skill authoring).
@@ -203,4 +203,23 @@ export function generateClaudeCodeSkills(projectRoot = "") {
         };
     });
 }
+export function generateClaudeCodeCommands(projectRoot = "") {
+    const prefix = projectRoot ? `${projectRoot}/` : "";
+    return WHYSPEC_COMMANDS.map((command) => {
+        const frontmatter = [
+            "---",
+            `description: ${COMMAND_DESCRIPTIONS[command]}`,
+            `argument-hint: ${COMMAND_ARGUMENT_HINTS[command]}`,
+            "---",
+        ].join("\n");
+        const instructions = getSkillInstructions(command)
+            .replaceAll("/whyspec-", "/whyspec:")
+            .replaceAll("Run /whyspec:", "Run /whyspec:");
+        const invocationLine = `Invoke this command as \`/whyspec:${command}\`.`;
+        return {
+            path: `${prefix}.claude/commands/whyspec:${command}.md`,
+            content: `${frontmatter}\n\n${invocationLine}\n\n${instructions}\n`,
+        };
+    });
+}
 //# sourceMappingURL=claude-code.js.map

package/dist/adapters/claude-code.js.map

@@ -1 +1 @@
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+{"version":3,"file":"claude-code.js","sourceRoot":"","sources":["../../src/adapters/claude-code.ts"],"names":[],"mappings":"AAAA,OAAO,EAEL,gBAAgB,EAChB,oBAAoB,EACpB,sBAAsB,GAEvB,MAAM,YAAY,CAAC;AAEpB;;;;;GAKG;AACH,SAAS,oBAAoB,CAAC,OAAuB;IACnD,QAAQ,OAAO,EAAE,CAAC;QAChB,KAAK,MAAM;YACT,OAAO;;;;;;;;;;;;;;;;;;;;;;;;;;;;;gGA6BmF,CAAC;QAE7F,KAAK,SAAS;YACZ,OAAO;;;;;;;;;;;;;;;;;;;;;;;;;;4DA0B+C,CAAC;QAEzD,KAAK,SAAS;YACZ,OAAO;;;;;;;;;;;;;;;;;;;;;;;;;;6EA0BgE,CAAC;QAE1E,KAAK,MAAM;YACT,OAAO;;;;;;;;;;;;;;;;;;;;;;0GAsB6F,CAAC;QAEvG,KAAK,QAAQ;YACX,OAAO;;;;;;;;;;;;;;;;;;;;;;;mFAuBsE,CAAC;QAEhF,KAAK,OAAO;YACV,OAAO;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kFA6BqE,CAAC;IACjF,CAAC;AACH,CAAC;AAED;;;;;;;;;GASG;AACH,MAAM,UAAU,wBAAwB,CACtC,cAAsB,EAAE;IAExB,MAAM,MAAM,GAAG,WAAW,CAAC,CAAC,CAAC,GAAG,WAAW,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC;IAEpD,OAAO,gBAAgB,CAAC,GAAG,CAAC,CAAC,OAAO,EAAE,EAAE;QACtC,MAAM,WAAW,GAAG;YAClB,KAAK;YACL,iBAAiB,OAAO,EAAE;YAC1B,gBAAgB,oBAAoB,CAAC,OAAO,CAAC,EAAE;YAC/C,KAAK;SACN,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAEb,MAAM,YAAY,GAAG,oBAAoB,CAAC,OAAO,CAAC,CAAC;QACnD,MAAM,OAAO,GAAG,GAAG,WAAW,OAAO,YAAY,IAAI,CAAC;QAEtD,OAAO;YACL,IAAI,EAAE,GAAG,MAAM,0BAA0B,OAAO,WAAW;YAC3D,OAAO;SACR,CAAC;IACJ,CAAC,CAAC,CAAC;AACL,CAAC;AAED,MAAM,UAAU,0BAA0B,CACxC,cAAsB,EAAE;IAExB,MAAM,MAAM,GAAG,WAAW,CAAC,CAAC,CAAC,GAAG,WAAW,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC;IAEpD,OAAO,gBAAgB,CAAC,GAAG,CAAC,CAAC,OAAO,EAAE,EAAE;QACtC,MAAM,WAAW,GAAG;YAClB,KAAK;YACL,gBAAgB,oBAAoB,CAAC,OAAO,CAAC,EAAE;YAC/C,kBAAkB,sBAAsB,CAAC,OAAO,CAAC,EAAE;YACnD,KAAK;SACN,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAEb,MAAM,YAAY,GAAG,oBAAoB,CAAC,OAAO,CAAC;aAC/C,UAAU,CAAC,WAAW,EAAE,WAAW,CAAC;aACpC,UAAU,CAAC,eAAe,EAAE,eAAe,CAAC,CAAC;QAChD,MAAM,cAAc,GAAG,qCAAqC,OAAO,KAAK,CAAC;QAEzE,OAAO;YACL,IAAI,EAAE,GAAG,MAAM,4BAA4B,OAAO,KAAK;YACvD,OAAO,EAAE,GAAG,WAAW,OAAO,cAAc,OAAO,YAAY,IAAI;SACpE,CAAC;IACJ,CAAC,CAAC,CAAC;AACL,CAAC"}

package/dist/adapters/types.d.ts

@@ -13,4 +13,6 @@ export declare const WHYSPEC_COMMANDS: readonly ["plan", "execute", "capture", "
 export type WhySpecCommand = (typeof WHYSPEC_COMMANDS)[number];
 /** One-line descriptions for each command, used across all adapters. */
 export declare const COMMAND_DESCRIPTIONS: Record<WhySpecCommand, string>;
+/** Gray placeholder text shown beside slash commands in UIs that support it. */
+export declare const COMMAND_ARGUMENT_HINTS: Record<WhySpecCommand, string>;
 //# sourceMappingURL=types.d.ts.map

package/dist/adapters/types.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../src/adapters/types.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,MAAM,WAAW,aAAa;IAC5B,qFAAqF;IACrF,IAAI,EAAE,MAAM,CAAC;IACb,mBAAmB;IACnB,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,gEAAgE;AAChE,eAAO,MAAM,gBAAgB,oEAOnB,CAAC;AAEX,MAAM,MAAM,cAAc,GAAG,CAAC,OAAO,gBAAgB,CAAC,CAAC,MAAM,CAAC,CAAC;AAE/D,wEAAwE;AACxE,eAAO,MAAM,oBAAoB,EAAE,MAAM,CAAC,cAAc,EAAE,MAAM,CAO/D,CAAC"}
+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../src/adapters/types.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,MAAM,WAAW,aAAa;IAC5B,qFAAqF;IACrF,IAAI,EAAE,MAAM,CAAC;IACb,mBAAmB;IACnB,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,gEAAgE;AAChE,eAAO,MAAM,gBAAgB,oEAOnB,CAAC;AAEX,MAAM,MAAM,cAAc,GAAG,CAAC,OAAO,gBAAgB,CAAC,CAAC,MAAM,CAAC,CAAC;AAE/D,wEAAwE;AACxE,eAAO,MAAM,oBAAoB,EAAE,MAAM,CAAC,cAAc,EAAE,MAAM,CAO/D,CAAC;AAEF,gFAAgF;AAChF,eAAO,MAAM,sBAAsB,EAAE,MAAM,CAAC,cAAc,EAAE,MAAM,CAOjE,CAAC"}

package/dist/adapters/types.js

@@ -16,4 +16,13 @@ export const COMMAND_DESCRIPTIONS = {
     search: "Search past decisions and reasoning across all changes",
     debug: "Debug with the scientific method and capture root cause",
 };
+/** Gray placeholder text shown beside slash commands in UIs that support it. */
+export const COMMAND_ARGUMENT_HINTS = {
+    plan: "change description",
+    execute: "change name",
+    capture: "change name",
+    show: "change name",
+    search: "query",
+    debug: "issue description",
+};
 //# sourceMappingURL=types.js.map

package/dist/adapters/types.js.map

@@ -1 +1 @@
-{"version":3,"file":"types.js","sourceRoot":"","sources":["../../src/adapters/types.ts"],"names":[],"mappings":"AAWA,gEAAgE;AAChE,MAAM,CAAC,MAAM,gBAAgB,GAAG;IAC9B,MAAM;IACN,SAAS;IACT,SAAS;IACT,MAAM;IACN,QAAQ;IACR,OAAO;CACC,CAAC;AAIX,wEAAwE;AACxE,MAAM,CAAC,MAAM,oBAAoB,GAAmC;IAClE,IAAI,EAAE,iDAAiD;IACvD,OAAO,EAAE,iDAAiD;IAC1D,OAAO,EAAE,0CAA0C;IACnD,IAAI,EAAE,4DAA4D;IAClE,MAAM,EAAE,wDAAwD;IAChE,KAAK,EAAE,yDAAyD;CACjE,CAAC"}
+{"version":3,"file":"types.js","sourceRoot":"","sources":["../../src/adapters/types.ts"],"names":[],"mappings":"AAWA,gEAAgE;AAChE,MAAM,CAAC,MAAM,gBAAgB,GAAG;IAC9B,MAAM;IACN,SAAS;IACT,SAAS;IACT,MAAM;IACN,QAAQ;IACR,OAAO;CACC,CAAC;AAIX,wEAAwE;AACxE,MAAM,CAAC,MAAM,oBAAoB,GAAmC;IAClE,IAAI,EAAE,iDAAiD;IACvD,OAAO,EAAE,iDAAiD;IAC1D,OAAO,EAAE,0CAA0C;IACnD,IAAI,EAAE,4DAA4D;IAClE,MAAM,EAAE,wDAAwD;IAChE,KAAK,EAAE,yDAAyD;CACjE,CAAC;AAEF,gFAAgF;AAChF,MAAM,CAAC,MAAM,sBAAsB,GAAmC;IACpE,IAAI,EAAE,oBAAoB;IAC1B,OAAO,EAAE,aAAa;IACtB,OAAO,EAAE,aAAa;IACtB,IAAI,EAAE,aAAa;IACnB,MAAM,EAAE,OAAO;IACf,KAAK,EAAE,mBAAmB;CAC3B,CAAC"}

package/dist/commands/init.d.ts

@@ -5,6 +5,7 @@ export interface ConfigOptions {
     telemetry: boolean;
 }
 export declare function createGitwhyDir(root: string): void;
+export declare function ensureVisibleGitwhyAlias(root: string, tools: string[]): void;
 export declare function writeConfigYaml(root: string, opts: ConfigOptions): void;
 export declare function addToGitignore(root: string): void;
 export declare function ensureVsCodeShowsGitwhy(root: string): void;

package/dist/commands/init.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../src/commands/init.ts"],"names":[],"mappings":"AAiBA,MAAM,WAAW,aAAa;IAC5B,WAAW,EAAE,MAAM,CAAC;IACpB,kBAAkB,EAAE,MAAM,CAAC;IAC3B,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,SAAS,EAAE,OAAO,CAAC;CACpB;AAID,wBAAgB,eAAe,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAQlD;AAED,wBAAgB,wBAAwB,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,GAAG,IAAI,CAkB5E;AAED,wBAAgB,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,aAAa,GAAG,IAAI,CAwBvE;AAED,wBAAgB,cAAc,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CA0CjD;AAsED,wBAAgB,uBAAuB,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAoB1D;AAuED,wBAAgB,iBAAiB,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,GAAG,IAAI,CAyBrE;AAED,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,GAAG,IAAI,CAIpE;AAID,wBAAgB,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CActD;AAID,wBAAsB,OAAO,IAAI,OAAO,CAAC,IAAI,CAAC,CA+I7C"}

package/dist/commands/init.js

@@ -7,10 +7,11 @@ import YAML from "yaml";
 import { renderWelcomeScreen, renderTelemetryNotice, renderSuccessMessage } from "../ui/welcome.js";
 import { promptToolPicker, needsAgentsMd } from "../ui/tool-picker.js";
 import { readConfig } from "../core/config.js";
-import { generateClaudeCodeSkills } from "../adapters/claude-code.js";
+import { generateClaudeCodeCommands, generateClaudeCodeSkills } from "../adapters/claude-code.js";
 import { generateCursorCommands } from "../adapters/cursor.js";
 import { generateCodexSkills } from "../adapters/codex.js";
 import { generateAgentsMd as generateAgentsMdAdapter } from "../adapters/agents-md.js";
+import { COMMAND_ARGUMENT_HINTS, COMMAND_DESCRIPTIONS } from "../adapters/types.js";
 // ── Filesystem helpers (testable, accept root) ───────────────────────
 export function createGitwhyDir(root) {
     const gitwhyDir = path.join(root, ".gitwhy");
@@ -21,6 +22,18 @@ export function createGitwhyDir(root) {
     fs.mkdirSync(archiveDir, { recursive: true });
     fs.mkdirSync(debugDir, { recursive: true });
 }
+export function ensureVisibleGitwhyAlias(root, tools) {
+    if (!tools.includes("codex")) {
+        return;
+    }
+    const aliasPath = path.join(root, "gitwhy");
+    const targetPath = path.join(root, ".gitwhy");
+    if (fs.existsSync(aliasPath)) {
+        return;
+    }
+    const relativeTarget = path.relative(path.dirname(aliasPath), targetPath) || ".gitwhy";
+    fs.symlinkSync(relativeTarget, aliasPath, process.platform === "win32" ? "junction" : "dir");
+}
 export function writeConfigYaml(root, opts) {
     const config = {
         version: "1.0",
@@ -43,22 +56,41 @@ export function writeConfigYaml(root, opts) {
     fs.writeFileSync(path.join(root, ".gitwhy", "config.yaml"), header + yamlStr, "utf-8");
 }
 export function addToGitignore(root) {
-    const gitignorePath = path.join(root, ".gitignore");
     const entry = ".gitwhy/";
-    if (fs.existsSync(gitignorePath)) {
-        const content = fs.readFileSync(gitignorePath, "utf-8");
-        // Check if already present (exact line match)
-        const lines = content.split("\n");
-        if (lines.some((line) => line.trim() === entry)) {
-            return; // Already present
+    const gitDir = path.join(root, ".git");
+    const gitignorePath = path.join(root, ".gitignore");
+    const gitExcludePath = path.join(gitDir, "info", "exclude");
+    const ensureIgnoreEntry = (filePath) => {
+        if (fs.existsSync(filePath)) {
+            const content = fs.readFileSync(filePath, "utf-8");
+            const lines = content.split("\n");
+            if (lines.some((line) => line.trim() === entry)) {
+                return;
+            }
+            const separator = content.endsWith("\n") ? "" : "\n";
+            fs.writeFileSync(filePath, content + separator + entry + "\n", "utf-8");
+            return;
         }
-        // Append with newline safety
-        const separator = content.endsWith("\n") ? "" : "\n";
-        fs.writeFileSync(gitignorePath, content + separator + entry + "\n", "utf-8");
-    }
-    else {
-        fs.writeFileSync(gitignorePath, entry + "\n", "utf-8");
+        fs.mkdirSync(path.dirname(filePath), { recursive: true });
+        fs.writeFileSync(filePath, entry + "\n", "utf-8");
+    };
+    const removeIgnoreEntry = (filePath) => {
+        if (!fs.existsSync(filePath)) {
+            return;
+        }
+        const content = fs.readFileSync(filePath, "utf-8");
+        const filtered = content
+            .split("\n")
+            .filter((line) => line.trim() !== entry && line.length > 0);
+        const nextContent = filtered.length > 0 ? `${filtered.join("\n")}\n` : "";
+        fs.writeFileSync(filePath, nextContent, "utf-8");
+    };
+    if (fs.existsSync(gitDir)) {
+        ensureIgnoreEntry(gitExcludePath);
+        removeIgnoreEntry(gitignorePath);
+        return;
     }
+    ensureIgnoreEntry(gitignorePath);
 }
 const WHYSPEC_COMMANDS = ["plan", "execute", "capture", "show", "search", "debug"];
 /** Write GeneratedFile[] to disk, creating directories as needed. */
@@ -152,6 +184,32 @@ function installAuthoredSkills(root, skillsSourceDir) {
     }
     return installed;
 }
+function installClaudeCommandsFromSkills(root, skillsSourceDir) {
+    if (!fs.existsSync(skillsSourceDir))
+        return false;
+    let installed = false;
+    for (const cmd of WHYSPEC_COMMANDS) {
+        const src = path.join(skillsSourceDir, `whyspec-${cmd}`, "SKILL.md");
+        if (!fs.existsSync(src)) {
+            continue;
+        }
+        const raw = fs.readFileSync(src, "utf-8");
+        const parts = raw.split("---");
+        const body = parts.length >= 3 ? parts.slice(2).join("---").trim() : raw.trim();
+        const frontmatter = [
+            "---",
+            `description: ${COMMAND_DESCRIPTIONS[cmd]}`,
+            `argument-hint: ${COMMAND_ARGUMENT_HINTS[cmd]}`,
+            "---",
+        ].join("\n");
+        const content = `${frontmatter}\n\n${body.replaceAll("/whyspec-", "/whyspec:")}\n`;
+        const dest = path.join(root, `whyspec:${cmd}.md`);
+        fs.mkdirSync(path.dirname(dest), { recursive: true });
+        fs.writeFileSync(dest, content, "utf-8");
+        installed = true;
+    }
+    return installed;
+}
 function getSkillsSourceDir() {
     const currentDir = path.dirname(fileURLToPath(import.meta.url));
     return path.join(path.dirname(path.dirname(currentDir)), "skills");
@@ -176,10 +234,14 @@ export function installSkillFiles(root, tools) {
     if (tools.includes("claude-code")) {
         // Try authored skill files first (production-quality from skills/ directory)
         const authoredInstalled = installAuthoredSkills(path.join(root, ".claude", "skills"), skillsDir);
+        const commandsInstalled = installClaudeCommandsFromSkills(path.join(root, ".claude", "commands"), skillsDir);
         if (!authoredInstalled) {
             // Fall back to adapter-generated placeholders
             writeGeneratedFiles(root, generateClaudeCodeSkills());
         }
+        if (!commandsInstalled) {
+            writeGeneratedFiles(root, generateClaudeCodeCommands());
+        }
     }
     // Cursor commands
     if (tools.includes("cursor")) {
@@ -243,7 +305,8 @@ export async function runInit() {
         // Check if skills need to be installed (e.g. prior crash before skill step)
         if (tools.includes("claude-code")) {
             const skillCheck = path.join(root, ".claude", "skills", "whyspec-plan", "SKILL.md");
-            if (!fs.existsSync(skillCheck)) {
+            const commandCheck = path.join(root, ".claude", "commands", "whyspec:plan.md");
+            if (!fs.existsSync(skillCheck) || !fs.existsSync(commandCheck)) {
                 console.log(chalk.yellow("\n  Repairing missing skill files...\n"));
                 installSkillFiles(root, tools);
                 generateAgentsMd(root, tools);
@@ -259,10 +322,13 @@ export async function runInit() {
             }
         }
         const gitignorePath = path.join(root, ".gitignore");
-        const hasGitwhyIgnore = fs.existsSync(gitignorePath) &&
-            fs.readFileSync(gitignorePath, "utf-8").split("\n").some((line) => line.trim() === ".gitwhy/");
-        if (!hasGitwhyIgnore) {
-            addToGitignore(root);
+        const gitExcludePath = path.join(root, ".git", "info", "exclude");
+        const beforeGitignore = fs.existsSync(gitignorePath) ? fs.readFileSync(gitignorePath, "utf-8") : "";
+        const beforeGitExclude = fs.existsSync(gitExcludePath) ? fs.readFileSync(gitExcludePath, "utf-8") : "";
+        addToGitignore(root);
+        const afterGitignore = fs.existsSync(gitignorePath) ? fs.readFileSync(gitignorePath, "utf-8") : "";
+        const afterGitExclude = fs.existsSync(gitExcludePath) ? fs.readFileSync(gitExcludePath, "utf-8") : "";
+        if (beforeGitignore !== afterGitignore || beforeGitExclude !== afterGitExclude) {
             repaired = true;
         }
         try {
@@ -278,9 +344,18 @@ export async function runInit() {
         catch {
             // Leave malformed user settings untouched and continue with existing repair work.
         }
+        if (tools.includes("codex")) {
+            const hadAlias = fs.existsSync(path.join(root, "gitwhy"));
+            ensureVisibleGitwhyAlias(root, tools);
+            if (!hadAlias && fs.existsSync(path.join(root, "gitwhy"))) {
+                repaired = true;
+            }
+        }
         if (repaired) {
             const exampleCommand = tools.includes("claude-code") || tools.includes("cursor")
-                ? "/whyspec-plan"
+                ? tools.includes("claude-code")
+                    ? "/whyspec:plan"
+                    : "/whyspec-plan"
                 : tools.includes("codex")
                     ? "$whyspec-plan"
                     : "whyspec plan";
@@ -314,9 +389,10 @@ export async function runInit() {
         tools: selectedTools,
         telemetry: process.env.WHYSPEC_TELEMETRY !== "0",
     });
-    // 6. Add to .gitignore
+    // 6. Ignore .gitwhy for Git without hiding it from agent file trees
     addToGitignore(root);
     ensureVsCodeShowsGitwhy(root);
+    ensureVisibleGitwhyAlias(root, selectedTools);
     // 7. Install skill files
     installSkillFiles(root, selectedTools);
     // 8. Generate AGENTS.md

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package/dist/ui/welcome.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"welcome.d.ts","sourceRoot":"","sources":["../../src/ui/welcome.ts"],"names":[],"mappings":"AAGA,wBAAgB,mBAAmB,IAAI,MAAM,CAqB5C;AAED,wBAAgB,qBAAqB,IAAI,MAAM,CAI9C;AAED,wBAAgB,oBAAoB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAyB5D"}
+{"version":3,"file":"welcome.d.ts","sourceRoot":"","sources":["../../src/ui/welcome.ts"],"names":[],"mappings":"AAGA,wBAAgB,mBAAmB,IAAI,MAAM,CAoB5C;AAED,wBAAgB,qBAAqB,IAAI,MAAM,CAI9C;AAED,wBAAgB,oBAAoB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CA+B5D"}

package/dist/ui/welcome.js

@@ -13,10 +13,9 @@ export function renderWelcomeScreen() {
     lines.push(chalk.white("    \u2514\u2500\u2500 changes/"));
     lines.push("");
     lines.push(chalk.dim("  Quick start after setup:"));
-    lines.push(`    ${chalk.green("whyspec-plan")}      Plan before coding`);
-    lines.push(`    ${chalk.green("whyspec-execute")}   Implement with context`);
-    lines.push(`    ${chalk.green("whyspec-capture")}   Save your reasoning`);
-    lines.push(`    ${chalk.green("whyspec-debug")}     Debug with science`);
+    lines.push(`    ${chalk.green("/whyspec:plan")}      Claude Code command`);
+    lines.push(`    ${chalk.green("/whyspec-plan")}      Cursor command`);
+    lines.push(`    ${chalk.green("$whyspec-plan")}      Codex skill`);
     lines.push("");
     return lines.join("\n");
 }
@@ -25,19 +24,25 @@ export function renderTelemetryNotice() {
 }
 export function renderSuccessMessage(tools) {
     const lines = [];
-    const usesSlashCommands = tools.includes("claude-code") || tools.includes("cursor");
+    const usesClaudeCommands = tools.includes("claude-code");
+    const usesCursorCommands = tools.includes("cursor");
     const usesCodex = tools.includes("codex");
-    const exampleCommand = usesSlashCommands
-        ? "/whyspec-plan"
-        : usesCodex
-            ? "$whyspec-plan"
-            : "whyspec plan";
+    const exampleCommand = usesClaudeCommands
+        ? "/whyspec:plan"
+        : usesCursorCommands
+            ? "/whyspec-plan"
+            : usesCodex
+                ? "$whyspec-plan"
+                : "whyspec plan";
     lines.push("");
     lines.push(chalk.green.bold("  \u2713 WhySpec initialized!"));
     lines.push("");
     lines.push(chalk.dim("  Created:"));
     lines.push(chalk.white("    .gitwhy/config.yaml"));
     lines.push(chalk.white("    .gitwhy/changes/"));
+    if (usesCodex) {
+        lines.push(chalk.white("    gitwhy/  -> .gitwhy/"));
+    }
     if (tools.length > 0) {
         lines.push("");
         lines.push(chalk.dim(`  Tools configured: ${tools.join(", ")}`));

package/dist/ui/welcome.js.map

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+{"version":3,"file":"welcome.js","sourceRoot":"","sources":["../../src/ui/welcome.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAC;AAC1B,OAAO,EAAE,UAAU,EAAE,MAAM,iBAAiB,CAAC;AAE7C,MAAM,UAAU,mBAAmB;IACjC,MAAM,KAAK,GAAa,EAAE,CAAC;IAE3B,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACf,KAAK,CAAC,IAAI,CAAC,UAAU,EAAE,CAAC,CAAC;IACzB,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACf,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,qCAAqC,CAAC,CAAC,CAAC;IAC9D,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACf,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,qBAAqB,CAAC,CAAC,CAAC;IAC7C,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,cAAc,CAAC,CAAC,CAAC;IACxC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,oCAAoC,CAAC,CAAC,CAAC;IAC9D,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,iCAAiC,CAAC,CAAC,CAAC;IAC3D,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACf,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,4BAA4B,CAAC,CAAC,CAAC;IACpD,KAAK,CAAC,IAAI,CAAC,OAAO,KAAK,CAAC,KAAK,CAAC,eAAe,CAAC,2BAA2B,CAAC,CAAC;IAC3E,KAAK,CAAC,IAAI,CAAC,OAAO,KAAK,CAAC,KAAK,CAAC,eAAe,CAAC,sBAAsB,CAAC,CAAC;IACtE,KAAK,CAAC,IAAI,CAAC,OAAO,KAAK,CAAC,KAAK,CAAC,eAAe,CAAC,mBAAmB,CAAC,CAAC;IACnE,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAEf,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC1B,CAAC;AAED,MAAM,UAAU,qBAAqB;IACnC,OAAO,KAAK,CAAC,GAAG,CACd,mEAAmE,CACpE,CAAC;AACJ,CAAC;AAED,MAAM,UAAU,oBAAoB,CAAC,KAAe;IAClD,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,MAAM,kBAAkB,GAAG,KAAK,CAAC,QAAQ,CAAC,aAAa,CAAC,CAAC;IACzD,MAAM,kBAAkB,GAAG,KAAK,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC;IACpD,MAAM,SAAS,GAAG,KAAK,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC;IAC1C,MAAM,cAAc,GAAG,kBAAkB;QACvC,CAAC,CAAC,eAAe;QACjB,CAAC,CAAC,kBAAkB;YAClB,CAAC,CAAC,eAAe;YACjB,CAAC,CAAC,SAAS;gBACT,CAAC,CAAC,eAAe;gBACjB,CAAC,CAAC,cAAc,CAAC;IAEvB,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACf,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,IAAI,CAAC,+BAA+B,CAAC,CAAC,CAAC;IAC9D,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACf,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,CAAC;IACpC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,yBAAyB,CAAC,CAAC,CAAC;IACnD,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,sBAAsB,CAAC,CAAC,CAAC;IAChD,IAAI,SAAS,EAAE,CAAC;QACd,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,0BAA0B,CAAC,CAAC,CAAC;IACtD,CAAC;IACD,IAAI,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACrB,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACf,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,uBAAuB,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC;IACnE,CAAC;IACD,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACf,KAAK,CAAC,IAAI,CAAC,iBAAiB,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,cAAc,CAAC,EAAE,CAAC,CAAC;IAC/D,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAEf,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC1B,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@gitwhy-cli/whyspec",
-  "version": "0.1.13",
+  "version": "0.1.15",
   "description": "The reasoning layer for AI-assisted development — capture WHY code was built the way it was",
   "type": "module",
   "main": "dist/cli/index.js",