@getmegabrain/cli 0.1.4 → 0.1.6

package/dist/science/store.js

@@ -0,0 +1,160 @@
+import fs from 'node:fs';
+import path from 'node:path';
+import { randomBytes } from 'node:crypto';
+import { MEGABRAIN_CONFIG_DIR } from '../paths.js';
+/** Scientific-web egress categories offered in onboarding step "Connect to the scientific web". */
+export const NETWORK_CATEGORIES = [
+    'NCBI / NIH',
+    'Genomics & biology',
+    'Proteomics',
+    'Literature & citations',
+    'Clinical & pharma',
+];
+/** Featured research connectors offered in onboarding step "Connectors & skills". */
+export const FEATURED_CONNECTORS = [
+    'BioMart',
+    'bioRxiv',
+    'Cancer Models',
+    'CellGuide',
+    'PubMed',
+    'OpenAlex',
+];
+function defaultSettings() {
+    return {
+        onboarded: false,
+        network: [...NETWORK_CATEGORIES],
+        connectors: [...FEATURED_CONNECTORS],
+        skills: [],
+        profile: '',
+    };
+}
+const STORE_FILE = path.join(MEGABRAIN_CONFIG_DIR, 'science-workspace.json');
+function id(prefix) {
+    return `${prefix}_${randomBytes(8).toString('hex')}`;
+}
+export class WorkspaceStore {
+    file;
+    now;
+    data;
+    constructor(file = STORE_FILE, now = () => new Date().toISOString()) {
+        this.file = file;
+        this.now = now;
+        this.data = this.load();
+    }
+    load() {
+        try {
+            const parsed = JSON.parse(fs.readFileSync(this.file, 'utf8'));
+            return {
+                projects: parsed.projects ?? [],
+                sessions: parsed.sessions ?? [],
+                settings: parsed.settings,
+            };
+        }
+        catch {
+            return { projects: [], sessions: [] };
+        }
+    }
+    save() {
+        fs.mkdirSync(path.dirname(this.file), { recursive: true });
+        // Atomic write so a crash mid-save can't corrupt the workspace.
+        const tmp = `${this.file}.${randomBytes(4).toString('hex')}.tmp`;
+        fs.writeFileSync(tmp, JSON.stringify(this.data, null, 2), { mode: 0o600 });
+        fs.renameSync(tmp, this.file);
+    }
+    // ── Projects ─────────────────────────────────────────────────────────
+    listProjects() {
+        return this.data.projects
+            .map(p => {
+            const sessions = this.data.sessions.filter(s => s.projectId === p.id);
+            const lastActivity = sessions.reduce((max, s) => (s.updatedAt > max ? s.updatedAt : max), p.updatedAt);
+            return { ...p, sessionCount: sessions.length, lastActivity };
+        })
+            .sort((a, b) => b.lastActivity.localeCompare(a.lastActivity));
+    }
+    getProject(projectId) {
+        return this.data.projects.find(p => p.id === projectId) ?? null;
+    }
+    createProject(input) {
+        const ts = this.now();
+        const project = {
+            id: id('proj'),
+            name: input.name.trim() || 'Untitled project',
+            description: input.description?.trim() ?? '',
+            agentContext: input.agentContext?.trim() ?? '',
+            createdAt: ts,
+            updatedAt: ts,
+        };
+        this.data.projects.push(project);
+        this.save();
+        return project;
+    }
+    updateProject(projectId, patch) {
+        const project = this.data.projects.find(p => p.id === projectId);
+        if (!project)
+            return null;
+        if (patch.name !== undefined)
+            project.name = patch.name.trim() || project.name;
+        if (patch.description !== undefined)
+            project.description = patch.description.trim();
+        if (patch.agentContext !== undefined)
+            project.agentContext = patch.agentContext.trim();
+        project.updatedAt = this.now();
+        this.save();
+        return project;
+    }
+    // ── Sessions ─────────────────────────────────────────────────────────
+    listSessions(projectId) {
+        return this.data.sessions
+            .filter(s => s.projectId === projectId)
+            .sort((a, b) => b.updatedAt.localeCompare(a.updatedAt));
+    }
+    recentSessions(limit = 10) {
+        return [...this.data.sessions]
+            .sort((a, b) => b.updatedAt.localeCompare(a.updatedAt))
+            .slice(0, limit);
+    }
+    getSession(sessionId) {
+        return this.data.sessions.find(s => s.id === sessionId) ?? null;
+    }
+    createSession(input) {
+        if (!this.getProject(input.projectId))
+            return null;
+        const ts = this.now();
+        const session = {
+            id: id('sess'),
+            projectId: input.projectId,
+            title: input.title?.trim() || 'New session',
+            summary: input.summary?.trim() ?? '',
+            createdAt: ts,
+            updatedAt: ts,
+        };
+        this.data.sessions.push(session);
+        this.save();
+        return session;
+    }
+    /** Bump a session's activity timestamp (and optionally its summary/title). */
+    touchSession(sessionId, patch) {
+        const session = this.data.sessions.find(s => s.id === sessionId);
+        if (!session)
+            return null;
+        if (patch?.title !== undefined)
+            session.title = patch.title.trim() || session.title;
+        if (patch?.summary !== undefined)
+            session.summary = patch.summary.trim();
+        session.updatedAt = this.now();
+        this.save();
+        return session;
+    }
+    // ── Onboarding settings ──────────────────────────────────────────────
+    getSettings() {
+        return { ...defaultSettings(), ...this.data.settings };
+    }
+    updateSettings(patch) {
+        const next = { ...this.getSettings(), ...patch };
+        if (patch.profile !== undefined)
+            next.profile = patch.profile.trim();
+        this.data.settings = next;
+        this.save();
+        return next;
+    }
+}

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@getmegabrain/cli",
-  "version": "0.1.4",
-  "description": "MegaBrain CLI — sign in once, then code from your terminal via OpenCode wired to the MegaBrain Gateway.",
+  "version": "0.1.6",
+  "description": "MegaBrain CLI — sign in once, then code from your terminal via OpenCode wired to the MegaBrain Gateway, or run `megabrain science` for the local research workbench.",
   "license": "MIT",
   "type": "module",
   "bin": {
@@ -28,7 +28,7 @@
   },
   "scripts": {
     "build": "tsc -p tsconfig.build.json",
-    "postbuild": "chmod +x dist/index.js",
+    "postbuild": "node scripts/copy-assets.mjs && chmod +x dist/index.js",
     "dev": "tsx src/index.ts",
     "typecheck": "tsgo --noEmit",
     "test": "vitest run --passWithNoTests",