@genspectrum/dashboard-components 1.7.0 → 1.8.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +22 -2
- package/custom-elements.json +81 -0
- package/dist/assets/{mutationOverTimeWorker-DPS3tmOd.js.map → mutationOverTimeWorker-BRPqAM5Z.js.map} +1 -1
- package/dist/components.d.ts +49 -22
- package/dist/components.js +130 -37
- package/dist/components.js.map +1 -1
- package/dist/util.d.ts +22 -22
- package/package.json +1 -1
- package/src/preact/MutationLinkTemplateContext.tsx +56 -0
- package/src/preact/components/annotated-mutation.stories.tsx +69 -17
- package/src/preact/components/annotated-mutation.tsx +45 -19
- package/src/preact/mutationComparison/mutation-comparison-table.tsx +3 -0
- package/src/preact/mutations/mutations-table.tsx +3 -0
- package/src/preact/shared/stories/expectMutationAnnotation.ts +3 -1
- package/src/preact/wastewater/mutationsOverTime/__mockData__/detailsAminAcidNonSegmented.json +88 -0
- package/src/preact/wastewater/mutationsOverTime/wastewater-mutations-over-time.stories.tsx +34 -0
- package/src/query/queryWastewaterMutationsOverTime.ts +1 -1
- package/src/utils/mutations.ts +18 -10
- package/src/web-components/gs-app.spec-d.ts +7 -0
- package/src/web-components/gs-app.stories.ts +32 -2
- package/src/web-components/gs-app.ts +17 -0
- package/src/web-components/mutation-link-template-context.ts +13 -0
- package/src/web-components/mutationLinks.mdx +27 -0
- package/src/web-components/visualization/gs-mutation-comparison.tsx +18 -8
- package/src/web-components/visualization/gs-mutations-over-time.stories.ts +12 -1
- package/src/web-components/visualization/gs-mutations-over-time.tsx +24 -14
- package/src/web-components/visualization/gs-mutations.tsx +19 -9
- package/src/web-components/wastewaterVisualization/gs-wastewater-mutations-over-time.tsx +17 -7
- package/standalone-bundle/assets/{mutationOverTimeWorker-Dp-A14AP.js.map → mutationOverTimeWorker-DtFX4Ihx.js.map} +1 -1
- package/standalone-bundle/dashboard-components.js +6360 -6298
- package/standalone-bundle/dashboard-components.js.map +1 -1
package/dist/components.d.ts
CHANGED
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@@ -130,6 +130,16 @@ export declare class AppComponent extends LitElement {
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aminoAcidMutations?: string[];
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aminoAcidPositions?: string[];
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}[];
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/**
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* Supply a link template for nucleotide and amino acid mutations.
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* The template should include '{{mutation}}' where the mutation code will be inserted, for example:
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*
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* https://my-site.org/query?nucleotideMutation={{mutation}}
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*/
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mutationLinkTemplate: {
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nucleotideMutation?: string;
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aminoAcidMutation?: string;
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};
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/* Excluded from this release type: referenceGenome */
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/* Excluded from this release type: updateReferenceGenome */
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render(): TemplateResult<1> | undefined;
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@@ -499,6 +509,7 @@ export declare class MutationComparisonComponent extends PreactLitAdapterWithGri
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*/
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pageSize: boolean | number;
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/* Excluded from this release type: mutationAnnotations */
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/* Excluded from this release type: mutationLinkTemplate */
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render(): JSX_2.Element;
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}
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@@ -585,6 +596,19 @@ export declare class MutationFilterComponent extends PreactLitAdapter {
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render(): JSX_2.Element;
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}
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declare type MutationLinkTemplate = default_2.infer<typeof mutationLinkTemplateSchema>;
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declare const mutationLinkTemplateSchema: default_2.ZodObject<{
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nucleotideMutation: default_2.ZodOptional<default_2.ZodString>;
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aminoAcidMutation: default_2.ZodOptional<default_2.ZodString>;
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}, "strip", default_2.ZodTypeAny, {
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nucleotideMutation?: string | undefined;
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aminoAcidMutation?: string | undefined;
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}, {
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nucleotideMutation?: string | undefined;
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aminoAcidMutation?: string | undefined;
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}>;
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/**
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* ## Context
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*
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@@ -687,6 +711,7 @@ export declare class MutationsComponent extends PreactLitAdapterWithGridJsStyles
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*/
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pageSize: boolean | number;
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/* Excluded from this release type: mutationAnnotations */
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/* Excluded from this release type: mutationLinkTemplate */
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render(): JSX_2.Element;
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}
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@@ -796,6 +821,7 @@ export declare class MutationsOverTimeComponent extends PreactLitAdapterWithGrid
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*/
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pageSizes: number[] | number;
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/* Excluded from this release type: mutationLinkTemplate */
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render(): JSX_2.Element;
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}
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*/
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pageSizes: number[] | number;
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/* Excluded from this release type: mutationAnnotations */
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/* Excluded from this release type: mutationLinkTemplate */
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render(): JSX_2.Element;
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}
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declare global {
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interface HTMLElementTagNameMap {
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'gs-
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'gs-prevalence-over-time': PrevalenceOverTimeComponent;
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}
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}
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declare global {
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namespace JSX {
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interface IntrinsicElements {
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'gs-
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'gs-prevalence-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
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}
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}
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}
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interface HTMLElementTagNameMap {
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'gs-relative-growth-advantage': RelativeGrowthAdvantageComponent;
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}
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}
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declare global {
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namespace JSX {
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interface IntrinsicElements {
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'gs-relative-growth-advantage': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
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}
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}
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}
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}
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declare global {
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interface HTMLElementTagNameMap {
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'gs-statistics': StatisticsComponent;
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}
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}
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declare global {
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namespace JSX {
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interface IntrinsicElements {
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'gs-statistics': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
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}
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}
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}
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declare global {
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'gs-sequences-by-location': SequencesByLocationComponent;
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'gs-wastewater-mutations-over-time': WastewaterMutationsOverTimeComponent;
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}
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declare module 'chart.js' {
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interface CartesianScaleTypeRegistry {
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logit: {
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