@genspectrum/dashboard-components 1.5.0 → 1.7.0

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Files changed (30) hide show
  1. package/README.md +4 -0
  2. package/custom-elements.json +37 -2
  3. package/dist/{NumberRangeFilterChangedEvent-CQ32Qy8D.js → NumberRangeFilterChangedEvent-BnPI-Asz.js} +17 -3
  4. package/dist/NumberRangeFilterChangedEvent-BnPI-Asz.js.map +1 -0
  5. package/dist/assets/{mutationOverTimeWorker-BJ_P2T8Y.js.map → mutationOverTimeWorker-DPS3tmOd.js.map} +1 -1
  6. package/dist/components.d.ts +50 -29
  7. package/dist/components.js +155 -61
  8. package/dist/components.js.map +1 -1
  9. package/dist/util.d.ts +53 -29
  10. package/dist/util.js +2 -1
  11. package/package.json +1 -1
  12. package/src/preact/genomeViewer/CDSPlot.tsx +13 -2
  13. package/src/preact/genomeViewer/loadGff3.ts +6 -0
  14. package/src/preact/mutationFilter/mutation-filter-info.tsx +2 -2
  15. package/src/preact/mutationFilter/mutation-filter.stories.tsx +72 -1
  16. package/src/preact/mutationFilter/mutation-filter.tsx +75 -37
  17. package/src/preact/mutationFilter/parseAndValidateMutation.ts +11 -11
  18. package/src/preact/mutationFilter/parseMutation.spec.ts +32 -22
  19. package/src/preact/mutationsOverTime/mutations-over-time.tsx +7 -4
  20. package/src/query/queryMutationsOverTime.ts +1 -1
  21. package/src/types.ts +17 -1
  22. package/src/utilEntrypoint.ts +4 -0
  23. package/src/utils/mutations.spec.ts +32 -0
  24. package/src/utils/mutations.ts +57 -10
  25. package/src/web-components/input/gs-mutation-filter.stories.ts +30 -1
  26. package/src/web-components/input/gs-mutation-filter.tsx +25 -2
  27. package/standalone-bundle/assets/{mutationOverTimeWorker-CkeGpKWp.js.map → mutationOverTimeWorker-Dp-A14AP.js.map} +1 -1
  28. package/standalone-bundle/dashboard-components.js +8187 -8116
  29. package/standalone-bundle/dashboard-components.js.map +1 -1
  30. package/dist/NumberRangeFilterChangedEvent-CQ32Qy8D.js.map +0 -1
@@ -537,6 +537,11 @@ export declare class MutationComparisonComponent extends PreactLitAdapterWithGri
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  *
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  * Examples: `ins_S:614:G`, `ins_614:G`
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  *
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+ * ### Enabled mutation types
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+ *
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+ * After parsing, the entered mutation/insertion also has to match the enabled mutation types,
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+ * which are configured with the `enabledMutationTypes` attribute.
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+ *
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  * @fires {CustomEvent<{
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  * nucleotideMutations: string[],
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  * aminoAcidMutations: string[],
@@ -565,6 +570,18 @@ export declare class MutationFilterComponent extends PreactLitAdapter {
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  * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  */
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  width: string;
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+ /**
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+ * Which mutation types this input will accept.
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+ * Any (or all) of the following can be given in a list:
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+ *
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+ * - `nucleotideMutations`
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+ * - `nucleotideInsertions`
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+ * - `aminoAcidMutations`
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+ * - `aminoAcidInsertions`
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+ *
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+ * By default or if none are given, all types are accepted.
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+ */
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+ enabledMutationTypes: MutationType[] | undefined;
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  render(): JSX_2.Element;
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  }
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@@ -782,6 +799,10 @@ export declare class MutationsOverTimeComponent extends PreactLitAdapterWithGrid
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  render(): JSX_2.Element;
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  }
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+ declare type MutationType = default_2.infer<typeof mutationTypeSchema>;
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+
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+ declare const mutationTypeSchema: default_2.ZodEnum<["nucleotideMutations", "nucleotideInsertions", "aminoAcidMutations", "aminoAcidInsertions"]>;
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+
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  /**
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  *
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  * ## Context
@@ -1701,7 +1722,7 @@ declare global {
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  declare global {
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  interface HTMLElementTagNameMap {
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- 'gs-mutations-over-time': MutationsOverTimeComponent;
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+ 'gs-number-sequences-over-time': NumberSequencesOverTimeComponent;
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  }
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  }
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@@ -1709,7 +1730,7 @@ declare global {
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  declare global {
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  namespace JSX {
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  interface IntrinsicElements {
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- 'gs-mutations-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
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+ 'gs-number-sequences-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
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  }
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  }
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  }
@@ -1717,7 +1738,7 @@ declare global {
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  declare global {
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  interface HTMLElementTagNameMap {
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- 'gs-sequences-by-location': SequencesByLocationComponent;
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+ 'gs-mutations-over-time': MutationsOverTimeComponent;
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  }
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  }
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@@ -1725,7 +1746,7 @@ declare global {
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  declare global {
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  namespace JSX {
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  interface IntrinsicElements {
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- 'gs-sequences-by-location': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
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+ 'gs-mutations-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
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  }
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  }
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  }
@@ -1733,7 +1754,7 @@ declare global {
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  declare global {
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  interface HTMLElementTagNameMap {
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- 'gs-number-sequences-over-time': NumberSequencesOverTimeComponent;
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+ 'gs-sequences-by-location': SequencesByLocationComponent;
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  }
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  }
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@@ -1741,7 +1762,7 @@ declare global {
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  declare global {
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  namespace JSX {
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  interface IntrinsicElements {
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- 'gs-number-sequences-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
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+ 'gs-sequences-by-location': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
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  }
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  }
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  }
@@ -1765,26 +1786,11 @@ declare global {
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  declare global {
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  interface HTMLElementTagNameMap {
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- 'gs-location-filter': LocationFilterComponent;
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+ 'gs-date-range-filter': DateRangeFilterComponent;
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  }
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  interface HTMLElementEventMap {
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- [gsEventNames.locationChanged]: LocationChangedEvent;
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- }
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- }
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-
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-
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- declare global {
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- namespace JSX {
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- interface IntrinsicElements {
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- 'gs-location-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
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- }
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- }
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- }
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-
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-
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- declare global {
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- interface HTMLElementTagNameMap {
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- 'gs-wastewater-mutations-over-time': WastewaterMutationsOverTimeComponent;
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+ [gsEventNames.dateRangeFilterChanged]: CustomEvent<Record<string, string>>;
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+ [gsEventNames.dateRangeOptionChanged]: DateRangeOptionChangedEvent;
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  }
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  }
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@@ -1792,7 +1798,7 @@ declare global {
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  declare global {
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  namespace JSX {
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  interface IntrinsicElements {
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- 'gs-wastewater-mutations-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
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+ 'gs-date-range-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
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  }
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  }
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  }
@@ -1800,11 +1806,10 @@ declare global {
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  declare global {
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  interface HTMLElementTagNameMap {
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- 'gs-date-range-filter': DateRangeFilterComponent;
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+ 'gs-location-filter': LocationFilterComponent;
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  }
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  interface HTMLElementEventMap {
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- [gsEventNames.dateRangeFilterChanged]: CustomEvent<Record<string, string>>;
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- [gsEventNames.dateRangeOptionChanged]: DateRangeOptionChangedEvent;
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+ [gsEventNames.locationChanged]: LocationChangedEvent;
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  }
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  }
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@@ -1812,7 +1817,7 @@ declare global {
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  declare global {
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  namespace JSX {
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  interface IntrinsicElements {
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- 'gs-date-range-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
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+ 'gs-location-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
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  }
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  }
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  }
@@ -1895,6 +1900,22 @@ declare global {
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  }
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+ declare global {
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+ interface HTMLElementTagNameMap {
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+ 'gs-wastewater-mutations-over-time': WastewaterMutationsOverTimeComponent;
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+ }
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+ }
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+
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+
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+ declare global {
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+ namespace JSX {
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+ interface IntrinsicElements {
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+ 'gs-wastewater-mutations-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
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+ }
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+ }
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+ }
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+
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+
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  declare module 'chart.js' {
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  interface CartesianScaleTypeRegistry {
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  logit: {