@genspectrum/dashboard-components 1.3.1 → 1.5.0

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Files changed (34) hide show
  1. package/custom-elements.json +97 -5
  2. package/dist/assets/{mutationOverTimeWorker-CQxrFo53.js.map → mutationOverTimeWorker-BJ_P2T8Y.js.map} +1 -1
  3. package/dist/components.d.ts +45 -25
  4. package/dist/components.js +118 -21
  5. package/dist/components.js.map +1 -1
  6. package/dist/util.d.ts +25 -25
  7. package/package.json +1 -1
  8. package/src/preact/lineageFilter/lineage-filter.stories.tsx +24 -0
  9. package/src/preact/lineageFilter/lineage-filter.tsx +13 -2
  10. package/src/preact/locationFilter/location-filter.stories.tsx +24 -0
  11. package/src/preact/locationFilter/location-filter.tsx +19 -3
  12. package/src/preact/mutationsOverTime/__mockData__/withGaps.ts +352 -0
  13. package/src/preact/mutationsOverTime/getFilteredMutationsOverTime.spec.ts +38 -0
  14. package/src/preact/mutationsOverTime/getFilteredMutationsOverTimeData.ts +11 -1
  15. package/src/preact/mutationsOverTime/mutationOverTimeWorker.mock.ts +2 -0
  16. package/src/preact/mutationsOverTime/mutations-over-time.stories.tsx +35 -0
  17. package/src/preact/mutationsOverTime/mutations-over-time.tsx +28 -4
  18. package/src/preact/textFilter/text-filter.stories.tsx +29 -4
  19. package/src/preact/textFilter/text-filter.tsx +13 -2
  20. package/src/query/queryMutationsOverTime.ts +37 -4
  21. package/src/query/queryMutationsOverTimeNewEndpoint.spec.ts +122 -0
  22. package/src/utils/map2d.spec.ts +30 -0
  23. package/src/utils/map2d.ts +14 -1
  24. package/src/web-components/input/gs-lineage-filter.stories.ts +7 -0
  25. package/src/web-components/input/gs-lineage-filter.tsx +8 -0
  26. package/src/web-components/input/gs-location-filter.stories.ts +7 -0
  27. package/src/web-components/input/gs-location-filter.tsx +9 -1
  28. package/src/web-components/input/gs-text-filter.stories.ts +7 -0
  29. package/src/web-components/input/gs-text-filter.tsx +8 -0
  30. package/src/web-components/visualization/gs-mutations-over-time.stories.ts +14 -1
  31. package/src/web-components/visualization/gs-mutations-over-time.tsx +8 -0
  32. package/standalone-bundle/assets/{mutationOverTimeWorker-CDACUs6w.js.map → mutationOverTimeWorker-CkeGpKWp.js.map} +1 -1
  33. package/standalone-bundle/dashboard-components.js +1413 -1330
  34. package/standalone-bundle/dashboard-components.js.map +1 -1
package/dist/util.d.ts CHANGED
@@ -965,7 +965,7 @@ declare global {
965
965
 
966
966
  declare global {
967
967
  interface HTMLElementTagNameMap {
968
- 'gs-prevalence-over-time': PrevalenceOverTimeComponent;
968
+ 'gs-relative-growth-advantage': RelativeGrowthAdvantageComponent;
969
969
  }
970
970
  }
971
971
 
@@ -973,7 +973,7 @@ declare global {
973
973
  declare global {
974
974
  namespace JSX {
975
975
  interface IntrinsicElements {
976
- 'gs-prevalence-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
976
+ 'gs-relative-growth-advantage': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
977
977
  }
978
978
  }
979
979
  }
@@ -981,7 +981,7 @@ declare global {
981
981
 
982
982
  declare global {
983
983
  interface HTMLElementTagNameMap {
984
- 'gs-relative-growth-advantage': RelativeGrowthAdvantageComponent;
984
+ 'gs-prevalence-over-time': PrevalenceOverTimeComponent;
985
985
  }
986
986
  }
987
987
 
@@ -989,7 +989,7 @@ declare global {
989
989
  declare global {
990
990
  namespace JSX {
991
991
  interface IntrinsicElements {
992
- 'gs-relative-growth-advantage': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
992
+ 'gs-prevalence-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
993
993
  }
994
994
  }
995
995
  }
@@ -1013,7 +1013,7 @@ declare global {
1013
1013
 
1014
1014
  declare global {
1015
1015
  interface HTMLElementTagNameMap {
1016
- 'gs-number-sequences-over-time': NumberSequencesOverTimeComponent;
1016
+ 'gs-mutations-over-time': MutationsOverTimeComponent;
1017
1017
  }
1018
1018
  }
1019
1019
 
@@ -1021,7 +1021,7 @@ declare global {
1021
1021
  declare global {
1022
1022
  namespace JSX {
1023
1023
  interface IntrinsicElements {
1024
- 'gs-number-sequences-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1024
+ 'gs-mutations-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1025
1025
  }
1026
1026
  }
1027
1027
  }
@@ -1029,7 +1029,7 @@ declare global {
1029
1029
 
1030
1030
  declare global {
1031
1031
  interface HTMLElementTagNameMap {
1032
- 'gs-mutations-over-time': MutationsOverTimeComponent;
1032
+ 'gs-sequences-by-location': SequencesByLocationComponent;
1033
1033
  }
1034
1034
  }
1035
1035
 
@@ -1037,7 +1037,7 @@ declare global {
1037
1037
  declare global {
1038
1038
  namespace JSX {
1039
1039
  interface IntrinsicElements {
1040
- 'gs-mutations-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1040
+ 'gs-sequences-by-location': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1041
1041
  }
1042
1042
  }
1043
1043
  }
@@ -1045,7 +1045,7 @@ declare global {
1045
1045
 
1046
1046
  declare global {
1047
1047
  interface HTMLElementTagNameMap {
1048
- 'gs-statistics': StatisticsComponent;
1048
+ 'gs-number-sequences-over-time': NumberSequencesOverTimeComponent;
1049
1049
  }
1050
1050
  }
1051
1051
 
@@ -1053,7 +1053,7 @@ declare global {
1053
1053
  declare global {
1054
1054
  namespace JSX {
1055
1055
  interface IntrinsicElements {
1056
- 'gs-statistics': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1056
+ 'gs-number-sequences-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1057
1057
  }
1058
1058
  }
1059
1059
  }
@@ -1061,7 +1061,7 @@ declare global {
1061
1061
 
1062
1062
  declare global {
1063
1063
  interface HTMLElementTagNameMap {
1064
- 'gs-sequences-by-location': SequencesByLocationComponent;
1064
+ 'gs-statistics': StatisticsComponent;
1065
1065
  }
1066
1066
  }
1067
1067
 
@@ -1069,7 +1069,7 @@ declare global {
1069
1069
  declare global {
1070
1070
  namespace JSX {
1071
1071
  interface IntrinsicElements {
1072
- 'gs-sequences-by-location': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1072
+ 'gs-statistics': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1073
1073
  }
1074
1074
  }
1075
1075
  }
@@ -1077,11 +1077,10 @@ declare global {
1077
1077
 
1078
1078
  declare global {
1079
1079
  interface HTMLElementTagNameMap {
1080
- 'gs-date-range-filter': DateRangeFilterComponent;
1080
+ 'gs-location-filter': LocationFilterComponent;
1081
1081
  }
1082
1082
  interface HTMLElementEventMap {
1083
- [gsEventNames.dateRangeFilterChanged]: CustomEvent<Record<string, string>>;
1084
- [gsEventNames.dateRangeOptionChanged]: DateRangeOptionChangedEvent;
1083
+ [gsEventNames.locationChanged]: LocationChangedEvent;
1085
1084
  }
1086
1085
  }
1087
1086
 
@@ -1089,7 +1088,7 @@ declare global {
1089
1088
  declare global {
1090
1089
  namespace JSX {
1091
1090
  interface IntrinsicElements {
1092
- 'gs-date-range-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1091
+ 'gs-location-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1093
1092
  }
1094
1093
  }
1095
1094
  }
@@ -1113,10 +1112,11 @@ declare global {
1113
1112
 
1114
1113
  declare global {
1115
1114
  interface HTMLElementTagNameMap {
1116
- 'gs-location-filter': LocationFilterComponent;
1115
+ 'gs-date-range-filter': DateRangeFilterComponent;
1117
1116
  }
1118
1117
  interface HTMLElementEventMap {
1119
- [gsEventNames.locationChanged]: LocationChangedEvent;
1118
+ [gsEventNames.dateRangeFilterChanged]: CustomEvent<Record<string, string>>;
1119
+ [gsEventNames.dateRangeOptionChanged]: DateRangeOptionChangedEvent;
1120
1120
  }
1121
1121
  }
1122
1122
 
@@ -1124,7 +1124,7 @@ declare global {
1124
1124
  declare global {
1125
1125
  namespace JSX {
1126
1126
  interface IntrinsicElements {
1127
- 'gs-location-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1127
+ 'gs-date-range-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1128
1128
  }
1129
1129
  }
1130
1130
  }
@@ -1132,10 +1132,10 @@ declare global {
1132
1132
 
1133
1133
  declare global {
1134
1134
  interface HTMLElementTagNameMap {
1135
- 'gs-mutation-filter': MutationFilterComponent;
1135
+ 'gs-text-filter': TextFilterComponent;
1136
1136
  }
1137
1137
  interface HTMLElementEventMap {
1138
- [gsEventNames.mutationFilterChanged]: CustomEvent<MutationsFilter>;
1138
+ [gsEventNames.textFilterChanged]: TextFilterChangedEvent;
1139
1139
  }
1140
1140
  }
1141
1141
 
@@ -1143,7 +1143,7 @@ declare global {
1143
1143
  declare global {
1144
1144
  namespace JSX {
1145
1145
  interface IntrinsicElements {
1146
- 'gs-mutation-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1146
+ 'gs-text-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1147
1147
  }
1148
1148
  }
1149
1149
  }
@@ -1151,10 +1151,10 @@ declare global {
1151
1151
 
1152
1152
  declare global {
1153
1153
  interface HTMLElementTagNameMap {
1154
- 'gs-text-filter': TextFilterComponent;
1154
+ 'gs-mutation-filter': MutationFilterComponent;
1155
1155
  }
1156
1156
  interface HTMLElementEventMap {
1157
- [gsEventNames.textFilterChanged]: TextFilterChangedEvent;
1157
+ [gsEventNames.mutationFilterChanged]: CustomEvent<MutationsFilter>;
1158
1158
  }
1159
1159
  }
1160
1160
 
@@ -1162,7 +1162,7 @@ declare global {
1162
1162
  declare global {
1163
1163
  namespace JSX {
1164
1164
  interface IntrinsicElements {
1165
- 'gs-text-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1165
+ 'gs-mutation-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1166
1166
  }
1167
1167
  }
1168
1168
  }
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@genspectrum/dashboard-components",
3
- "version": "1.3.1",
3
+ "version": "1.5.0",
4
4
  "description": "GenSpectrum web components for building dashboards",
5
5
  "type": "module",
6
6
  "license": "AGPL-3.0-only",
@@ -74,6 +74,11 @@ const meta: Meta = {
74
74
  type: 'object',
75
75
  },
76
76
  },
77
+ hideCounts: {
78
+ control: {
79
+ type: 'boolean',
80
+ },
81
+ },
77
82
  },
78
83
 
79
84
  args: {
@@ -84,6 +89,7 @@ const meta: Meta = {
84
89
  placeholderText: 'Enter a lineage',
85
90
  value: 'A.1',
86
91
  width: '100%',
92
+ hideCounts: false,
87
93
  },
88
94
  };
89
95
 
@@ -163,6 +169,24 @@ export const WithNoLapisField: StoryObj<LineageFilterProps> = {
163
169
  },
164
170
  };
165
171
 
172
+ export const WithHideCountsTrue: StoryObj<LineageFilterProps> = {
173
+ ...Default,
174
+ args: {
175
+ ...Default.args,
176
+ hideCounts: true,
177
+ },
178
+ play: async ({ canvasElement, step }) => {
179
+ const { canvas } = await prepare(canvasElement, step);
180
+
181
+ await step('visible without counts', async () => {
182
+ const input = await inputField(canvas);
183
+ await userEvent.clear(input);
184
+ await userEvent.type(input, 'B.1');
185
+ await expect(canvas.getByRole('option', { name: 'B.1' })).toBeVisible();
186
+ });
187
+ },
188
+ };
189
+
166
190
  async function prepare(canvasElement: HTMLElement, step: StepFunction<PreactRenderer, unknown>) {
167
191
  const canvas = within(canvasElement);
168
192
 
@@ -16,6 +16,7 @@ const lineageSelectorPropsSchema = z.object({
16
16
  lapisField: z.string().min(1),
17
17
  placeholderText: z.string().optional(),
18
18
  value: z.string(),
19
+ hideCounts: z.boolean().optional(),
19
20
  });
20
21
  const lineageFilterInnerPropsSchema = lineageSelectorPropsSchema.extend({
21
22
  lapisFilter: lapisFilterSchema,
@@ -46,6 +47,7 @@ const LineageFilterInner: FunctionComponent<LineageFilterInnerProps> = ({
46
47
  placeholderText,
47
48
  value,
48
49
  lapisFilter,
50
+ hideCounts,
49
51
  }) => {
50
52
  const lapisUrl = useLapisUrl();
51
53
 
@@ -62,7 +64,15 @@ const LineageFilterInner: FunctionComponent<LineageFilterInnerProps> = ({
62
64
  throw error;
63
65
  }
64
66
 
65
- return <LineageSelector lapisField={lapisField} value={value} placeholderText={placeholderText} data={data} />;
67
+ return (
68
+ <LineageSelector
69
+ lapisField={lapisField}
70
+ value={value}
71
+ placeholderText={placeholderText}
72
+ data={data}
73
+ hideCounts={hideCounts}
74
+ />
75
+ );
66
76
  };
67
77
 
68
78
  const LineageSelector = ({
@@ -70,6 +80,7 @@ const LineageSelector = ({
70
80
  value,
71
81
  placeholderText,
72
82
  data,
83
+ hideCounts = false,
73
84
  }: LineageSelectorProps & {
74
85
  data: LineageItem[];
75
86
  }) => {
@@ -88,7 +99,7 @@ const LineageSelector = ({
88
99
  formatItemInList={(item: LineageItem) => (
89
100
  <p>
90
101
  <span>{item.lineage}</span>
91
- <span className='ml-2 text-gray-500'>({item.count})</span>
102
+ {!hideCounts && <span className='ml-2 text-gray-500'>({item.count})</span>}
92
103
  </p>
93
104
  )}
94
105
  />
@@ -44,6 +44,7 @@ const meta: Meta<LocationFilterProps> = {
44
44
  lapisFilter: {
45
45
  age: 18,
46
46
  },
47
+ hideCounts: false,
47
48
  },
48
49
  argTypes: {
49
50
  fields: {
@@ -66,6 +67,11 @@ const meta: Meta<LocationFilterProps> = {
66
67
  type: 'text',
67
68
  },
68
69
  },
70
+ hideCounts: {
71
+ control: {
72
+ type: 'boolean',
73
+ },
74
+ },
69
75
  lapisFilter: {
70
76
  control: {
71
77
  type: 'object',
@@ -146,6 +152,24 @@ export const OnBlurInput: StoryObj<LocationFilterProps> = {
146
152
  },
147
153
  };
148
154
 
155
+ export const WithHideCountsTrue: StoryObj<LocationFilterProps> = {
156
+ ...Primary,
157
+ args: {
158
+ ...Primary.args,
159
+ hideCounts: true,
160
+ },
161
+ play: async ({ canvasElement, step }) => {
162
+ const { canvas } = await prepare(canvasElement, step);
163
+
164
+ await step('visible without counts', async () => {
165
+ const input = await inputField(canvas);
166
+ await userEvent.clear(input);
167
+ await userEvent.type(input, 'Adajan');
168
+ await expect(canvas.getByRole('option', { name: 'Adajan Asia / India / Gujarat / Adajan' })).toBeVisible();
169
+ });
170
+ },
171
+ };
172
+
149
173
  const inputField = (canvas: ReturnType<typeof within>) => canvas.findByPlaceholderText('Enter a location');
150
174
 
151
175
  async function prepare(canvasElement: HTMLElement, step: StepFunction<PreactRenderer, unknown>) {
@@ -16,6 +16,7 @@ const locationSelectorPropsSchema = z.object({
16
16
  value: lapisLocationFilterSchema.optional(),
17
17
  placeholderText: z.string().optional(),
18
18
  fields: z.array(z.string()).min(1),
19
+ hideCounts: z.boolean().optional(),
19
20
  });
20
21
  const locationFilterInnerPropsSchema = locationSelectorPropsSchema.extend({ lapisFilter: lapisFilterSchema });
21
22
  const locationFilterPropsSchema = locationFilterInnerPropsSchema.extend({
@@ -39,7 +40,13 @@ export const LocationFilter: FunctionComponent<LocationFilterProps> = (props) =>
39
40
  );
40
41
  };
41
42
 
42
- export const LocationFilterInner = ({ value, fields, placeholderText, lapisFilter }: LocationFilterInnerProps) => {
43
+ export const LocationFilterInner = ({
44
+ value,
45
+ fields,
46
+ placeholderText,
47
+ lapisFilter,
48
+ hideCounts,
49
+ }: LocationFilterInnerProps) => {
43
50
  const lapis = useLapisUrl();
44
51
 
45
52
  const { data, error, isLoading } = useQuery(
@@ -54,7 +61,15 @@ export const LocationFilterInner = ({ value, fields, placeholderText, lapisFilte
54
61
  throw error;
55
62
  }
56
63
 
57
- return <LocationSelector fields={fields} value={value} placeholderText={placeholderText} locationData={data} />;
64
+ return (
65
+ <LocationSelector
66
+ fields={fields}
67
+ value={value}
68
+ placeholderText={placeholderText}
69
+ locationData={data}
70
+ hideCounts={hideCounts}
71
+ />
72
+ );
58
73
  };
59
74
 
60
75
  type SelectItem = {
@@ -69,6 +84,7 @@ const LocationSelector = ({
69
84
  value,
70
85
  placeholderText,
71
86
  locationData,
87
+ hideCounts = false,
72
88
  }: LocationSelectorProps & {
73
89
  locationData: LocationEntry[];
74
90
  }) => {
@@ -96,7 +112,7 @@ const LocationSelector = ({
96
112
  <>
97
113
  <p>
98
114
  <span>{item.label}</span>
99
- <span className='ml-2 text-gray-500'>({item.count})</span>
115
+ {!hideCounts && <span className='ml-2 text-gray-500'>({item.count})</span>}
100
116
  </p>
101
117
  <span className='text-sm text-gray-500'>{item.description}</span>
102
118
  </>