@genspectrum/dashboard-components 1.17.0 → 1.18.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/custom-elements.json +4 -4
- package/dist/components.d.ts +173 -73
- package/dist/components.js +92 -49
- package/dist/components.js.map +1 -1
- package/dist/util.d.ts +241 -81
- package/package.json +1 -1
- package/src/preact/MutationAnnotationsContext.spec.tsx +82 -10
- package/src/preact/MutationAnnotationsContext.tsx +92 -44
- package/src/preact/components/annotated-mutation.stories.tsx +31 -0
- package/src/preact/components/annotated-mutation.tsx +5 -5
- package/src/preact/components/downshift-combobox.tsx +53 -41
- package/src/preact/lineageFilter/lineage-filter.stories.tsx +113 -0
- package/src/preact/mutationsOverTime/getFilteredMutationCodes.spec.ts +2 -2
- package/src/preact/mutationsOverTime/getFilteredMutationCodes.ts +5 -5
- package/src/web-components/gs-app.ts +8 -4
- package/src/web-components/mutation-annotations-context.ts +13 -5
- package/src/web-components/mutationAnnotations.mdx +29 -0
- package/standalone-bundle/dashboard-components.js +3938 -3896
- package/standalone-bundle/dashboard-components.js.map +1 -1
package/custom-elements.json
CHANGED
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@@ -246,10 +246,10 @@
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"kind": "field",
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"name": "mutationAnnotations",
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"type": {
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-
"text": "{\n name: string;\n description: string;\n symbol: string;\n nucleotideMutations?: string[];\n nucleotidePositions?: string[];\n aminoAcidMutations?: string[];\n aminoAcidPositions?: string[];\n }[]"
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"text": "{\n name: string;\n description: string;\n symbol: string;\n nucleotideMutations?: (string | { mutation: string; name?: string; description?: string })[];\n nucleotidePositions?: (string | { position: string; name?: string; description?: string })[];\n aminoAcidMutations?: (string | { mutation: string; name?: string; description?: string })[];\n aminoAcidPositions?: (string | { position: string; name?: string; description?: string })[];\n }[]"
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},
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"default": "[]",
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"description": "Supply lists of mutations that are especially relevant for the current organism.\n\nVisit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-mutation-annotations--docs for more information.",
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"description": "Supply lists of mutations that are especially relevant for the current organism.\n\nEach entry in `nucleotideMutations`, `aminoAcidMutations`, `nucleotidePositions`, and `aminoAcidPositions`\ncan be either a plain string or an object with an optional `name` and `description` that override the\ngroup-level values in the annotation popup for that specific mutation or position.\n\nVisit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-mutation-annotations--docs for more information.",
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"attribute": "mutationAnnotations"
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},
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{
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@@ -276,10 +276,10 @@
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{
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"name": "mutationAnnotations",
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"type": {
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-
"text": "{\n name: string;\n description: string;\n symbol: string;\n nucleotideMutations?: string[];\n nucleotidePositions?: string[];\n aminoAcidMutations?: string[];\n aminoAcidPositions?: string[];\n }[]"
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"text": "{\n name: string;\n description: string;\n symbol: string;\n nucleotideMutations?: (string | { mutation: string; name?: string; description?: string })[];\n nucleotidePositions?: (string | { position: string; name?: string; description?: string })[];\n aminoAcidMutations?: (string | { mutation: string; name?: string; description?: string })[];\n aminoAcidPositions?: (string | { position: string; name?: string; description?: string })[];\n }[]"
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},
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"default": "[]",
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"description": "Supply lists of mutations that are especially relevant for the current organism.\n\nVisit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-mutation-annotations--docs for more information.",
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"description": "Supply lists of mutations that are especially relevant for the current organism.\n\nEach entry in `nucleotideMutations`, `aminoAcidMutations`, `nucleotidePositions`, and `aminoAcidPositions`\ncan be either a plain string or an object with an optional `name` and `description` that override the\ngroup-level values in the annotation popup for that specific mutation or position.\n\nVisit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-mutation-annotations--docs for more information.",
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"fieldName": "mutationAnnotations"
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},
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{
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package/dist/components.d.ts
CHANGED
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@@ -118,16 +118,36 @@ export declare class AppComponent extends LitElement {
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/**
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* Supply lists of mutations that are especially relevant for the current organism.
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*
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* Each entry in `nucleotideMutations`, `aminoAcidMutations`, `nucleotidePositions`, and `aminoAcidPositions`
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* can be either a plain string or an object with an optional `name` and `description` that override the
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* group-level values in the annotation popup for that specific mutation or position.
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*
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* Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-mutation-annotations--docs for more information.
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*/
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mutationAnnotations: {
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name: string;
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description: string;
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symbol: string;
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nucleotideMutations?: string
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nucleotideMutations?: (string | {
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mutation: string;
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name?: string;
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description?: string;
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})[];
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nucleotidePositions?: (string | {
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position: string;
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name?: string;
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description?: string;
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})[];
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aminoAcidMutations?: (string | {
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mutation: string;
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name?: string;
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description?: string;
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})[];
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aminoAcidPositions?: (string | {
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position: string;
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name?: string;
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description?: string;
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})[];
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}[];
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/**
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* Supply a link template for nucleotide and amino acid mutations.
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name: default_2.ZodString;
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description: default_2.ZodString;
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symbol: default_2.ZodString;
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nucleotideMutations: default_2.ZodOptional<default_2.ZodArray<default_2.ZodString,
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nucleotideMutations: default_2.ZodOptional<default_2.ZodArray<default_2.ZodUnion<[default_2.ZodString, default_2.ZodObject<{
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mutation: default_2.ZodString;
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name: default_2.ZodOptional<default_2.ZodString>;
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description: default_2.ZodOptional<default_2.ZodString>;
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}, "strip", default_2.ZodTypeAny, {
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mutation: string;
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name?: string | undefined;
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description?: string | undefined;
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}, {
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mutation: string;
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name?: string | undefined;
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description?: string | undefined;
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}>]>, "many">>;
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nucleotidePositions: default_2.ZodOptional<default_2.ZodArray<default_2.ZodUnion<[default_2.ZodString, default_2.ZodObject<{
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position: default_2.ZodString;
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name: default_2.ZodOptional<default_2.ZodString>;
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description: default_2.ZodOptional<default_2.ZodString>;
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}, "strip", default_2.ZodTypeAny, {
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position: string;
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name?: string | undefined;
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description?: string | undefined;
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}, {
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position: string;
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name?: string | undefined;
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description?: string | undefined;
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}>]>, "many">>;
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aminoAcidMutations: default_2.ZodOptional<default_2.ZodArray<default_2.ZodUnion<[default_2.ZodString, default_2.ZodObject<{
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mutation: default_2.ZodString;
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name: default_2.ZodOptional<default_2.ZodString>;
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description: default_2.ZodOptional<default_2.ZodString>;
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}, "strip", default_2.ZodTypeAny, {
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mutation: string;
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name?: string | undefined;
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description?: string | undefined;
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}, {
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mutation: string;
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name?: string | undefined;
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description?: string | undefined;
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}>]>, "many">>;
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aminoAcidPositions: default_2.ZodOptional<default_2.ZodArray<default_2.ZodUnion<[default_2.ZodString, default_2.ZodObject<{
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position: default_2.ZodString;
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name: default_2.ZodOptional<default_2.ZodString>;
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description: default_2.ZodOptional<default_2.ZodString>;
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}, "strip", default_2.ZodTypeAny, {
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position: string;
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name?: string | undefined;
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description?: string | undefined;
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}, {
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position: string;
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name?: string | undefined;
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description?: string | undefined;
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}>]>, "many">>;
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}, "strip", default_2.ZodTypeAny, {
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symbol: string;
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name: string;
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description: string;
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nucleotideMutations?: string
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nucleotideMutations?: (string | {
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mutation: string;
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name?: string | undefined;
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description?: string | undefined;
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})[] | undefined;
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nucleotidePositions?: (string | {
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position: string;
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name?: string | undefined;
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description?: string | undefined;
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})[] | undefined;
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aminoAcidMutations?: (string | {
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mutation: string;
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name?: string | undefined;
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description?: string | undefined;
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})[] | undefined;
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aminoAcidPositions?: (string | {
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position: string;
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name?: string | undefined;
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description?: string | undefined;
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})[] | undefined;
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}, {
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symbol: string;
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name: string;
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description: string;
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nucleotideMutations?: string
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nucleotideMutations?: (string | {
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mutation: string;
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name?: string | undefined;
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description?: string | undefined;
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})[] | undefined;
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nucleotidePositions?: (string | {
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position: string;
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name?: string | undefined;
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description?: string | undefined;
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})[] | undefined;
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mutation: string;
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name?: string | undefined;
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description?: string | undefined;
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})[] | undefined;
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aminoAcidPositions?: (string | {
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position: string;
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name?: string | undefined;
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description?: string | undefined;
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})[] | undefined;
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}>, "many">;
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/**
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}
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}
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}
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interface HTMLElementEventMap {
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}
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}
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interface HTMLElementEventMap {
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[gsEventNames.mutationFilterChanged]: CustomEvent<MutationsFilter>;
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interface HTMLElementTagNameMap {
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1859
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'gs-
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1972
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+
'gs-lineage-filter': LineageFilterComponent;
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1973
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+
}
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1974
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+
interface HTMLElementEventMap {
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1975
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+
[gsEventNames.lineageFilterChanged]: LineageFilterChangedEvent;
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1976
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+
[gsEventNames.lineageFilterMultiChanged]: LineageMultiFilterChangedEvent;
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1977
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}
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}
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1979
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@@ -1864,7 +1981,7 @@ declare global {
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1981
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declare global {
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1982
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namespace React.JSX {
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1983
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interface IntrinsicElements {
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1867
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'gs-
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1984
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+
'gs-lineage-filter': LineageFilterComponent;
|
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1985
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}
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1986
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}
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1987
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}
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@@ -1872,7 +1989,11 @@ declare global {
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1989
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1990
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declare global {
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1991
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interface HTMLElementTagNameMap {
|
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-
'gs-number-
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1992
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+
'gs-number-range-filter': NumberRangeFilterComponent;
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1993
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+
}
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1994
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+
interface HTMLElementEventMap {
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1995
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+
[gsEventNames.numberRangeFilterChanged]: NumberRangeFilterChangedEvent;
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[gsEventNames.numberRangeValueChanged]: NumberRangeValueChangedEvent;
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}
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}
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1999
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@@ -1880,7 +2001,7 @@ declare global {
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2001
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declare global {
|
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2002
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namespace React.JSX {
|
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2003
|
interface IntrinsicElements {
|
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-
'gs-number-
|
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2004
|
+
'gs-number-range-filter': NumberRangeFilterComponent;
|
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2005
|
}
|
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2006
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}
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2007
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}
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@@ -1888,7 +2009,7 @@ declare global {
|
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1888
2009
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1889
2010
|
declare global {
|
|
1890
2011
|
interface HTMLElementTagNameMap {
|
|
1891
|
-
'gs-
|
|
2012
|
+
'gs-genome-data-viewer': GenomeDataViewerComponent;
|
|
1892
2013
|
}
|
|
1893
2014
|
}
|
|
1894
2015
|
|
|
@@ -1896,7 +2017,7 @@ declare global {
|
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1896
2017
|
declare global {
|
|
1897
2018
|
namespace React.JSX {
|
|
1898
2019
|
interface IntrinsicElements {
|
|
1899
|
-
'gs-
|
|
2020
|
+
'gs-genome-data-viewer': GenomeDataViewerComponent;
|
|
1900
2021
|
}
|
|
1901
2022
|
}
|
|
1902
2023
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}
|
|
@@ -1904,7 +2025,7 @@ declare global {
|
|
|
1904
2025
|
|
|
1905
2026
|
declare global {
|
|
1906
2027
|
interface HTMLElementTagNameMap {
|
|
1907
|
-
'gs-
|
|
2028
|
+
'gs-mutations': MutationsComponent;
|
|
1908
2029
|
}
|
|
1909
2030
|
}
|
|
1910
2031
|
|
|
@@ -1912,7 +2033,7 @@ declare global {
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1912
2033
|
declare global {
|
|
1913
2034
|
namespace React.JSX {
|
|
1914
2035
|
interface IntrinsicElements {
|
|
1915
|
-
'gs-
|
|
2036
|
+
'gs-mutations': MutationsComponent;
|
|
1916
2037
|
}
|
|
1917
2038
|
}
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|
1918
2039
|
}
|
|
@@ -1920,7 +2041,7 @@ declare global {
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|
|
1920
2041
|
|
|
1921
2042
|
declare global {
|
|
1922
2043
|
interface HTMLElementTagNameMap {
|
|
1923
|
-
'gs-
|
|
2044
|
+
'gs-mutation-comparison': MutationComparisonComponent;
|
|
1924
2045
|
}
|
|
1925
2046
|
}
|
|
1926
2047
|
|
|
@@ -1928,7 +2049,7 @@ declare global {
|
|
|
1928
2049
|
declare global {
|
|
1929
2050
|
namespace React.JSX {
|
|
1930
2051
|
interface IntrinsicElements {
|
|
1931
|
-
'gs-
|
|
2052
|
+
'gs-mutation-comparison': MutationComparisonComponent;
|
|
1932
2053
|
}
|
|
1933
2054
|
}
|
|
1934
2055
|
}
|
|
@@ -1936,7 +2057,7 @@ declare global {
|
|
|
1936
2057
|
|
|
1937
2058
|
declare global {
|
|
1938
2059
|
interface HTMLElementTagNameMap {
|
|
1939
|
-
'gs-
|
|
2060
|
+
'gs-prevalence-over-time': PrevalenceOverTimeComponent;
|
|
1940
2061
|
}
|
|
1941
2062
|
}
|
|
1942
2063
|
|
|
@@ -1944,7 +2065,7 @@ declare global {
|
|
|
1944
2065
|
declare global {
|
|
1945
2066
|
namespace React.JSX {
|
|
1946
2067
|
interface IntrinsicElements {
|
|
1947
|
-
'gs-
|
|
2068
|
+
'gs-prevalence-over-time': PrevalenceOverTimeComponent;
|
|
1948
2069
|
}
|
|
1949
2070
|
}
|
|
1950
2071
|
}
|
|
@@ -1952,7 +2073,7 @@ declare global {
|
|
|
1952
2073
|
|
|
1953
2074
|
declare global {
|
|
1954
2075
|
interface HTMLElementTagNameMap {
|
|
1955
|
-
'gs-
|
|
2076
|
+
'gs-aggregate': AggregateComponent;
|
|
1956
2077
|
}
|
|
1957
2078
|
}
|
|
1958
2079
|
|
|
@@ -1960,7 +2081,7 @@ declare global {
|
|
|
1960
2081
|
declare global {
|
|
1961
2082
|
namespace React.JSX {
|
|
1962
2083
|
interface IntrinsicElements {
|
|
1963
|
-
'gs-
|
|
2084
|
+
'gs-aggregate': AggregateComponent;
|
|
1964
2085
|
}
|
|
1965
2086
|
}
|
|
1966
2087
|
}
|
|
@@ -1968,11 +2089,7 @@ declare global {
|
|
|
1968
2089
|
|
|
1969
2090
|
declare global {
|
|
1970
2091
|
interface HTMLElementTagNameMap {
|
|
1971
|
-
'gs-
|
|
1972
|
-
}
|
|
1973
|
-
interface HTMLElementEventMap {
|
|
1974
|
-
[gsEventNames.dateRangeFilterChanged]: CustomEvent<Record<string, string>>;
|
|
1975
|
-
[gsEventNames.dateRangeOptionChanged]: DateRangeOptionChangedEvent;
|
|
2092
|
+
'gs-relative-growth-advantage': RelativeGrowthAdvantageComponent;
|
|
1976
2093
|
}
|
|
1977
2094
|
}
|
|
1978
2095
|
|
|
@@ -1980,7 +2097,7 @@ declare global {
|
|
|
1980
2097
|
declare global {
|
|
1981
2098
|
namespace React.JSX {
|
|
1982
2099
|
interface IntrinsicElements {
|
|
1983
|
-
'gs-
|
|
2100
|
+
'gs-relative-growth-advantage': RelativeGrowthAdvantageComponent;
|
|
1984
2101
|
}
|
|
1985
2102
|
}
|
|
1986
2103
|
}
|
|
@@ -1988,10 +2105,7 @@ declare global {
|
|
|
1988
2105
|
|
|
1989
2106
|
declare global {
|
|
1990
2107
|
interface HTMLElementTagNameMap {
|
|
1991
|
-
'gs-
|
|
1992
|
-
}
|
|
1993
|
-
interface HTMLElementEventMap {
|
|
1994
|
-
[gsEventNames.locationChanged]: LocationChangedEvent;
|
|
2108
|
+
'gs-number-sequences-over-time': NumberSequencesOverTimeComponent;
|
|
1995
2109
|
}
|
|
1996
2110
|
}
|
|
1997
2111
|
|
|
@@ -1999,7 +2113,7 @@ declare global {
|
|
|
1999
2113
|
declare global {
|
|
2000
2114
|
namespace React.JSX {
|
|
2001
2115
|
interface IntrinsicElements {
|
|
2002
|
-
'gs-
|
|
2116
|
+
'gs-number-sequences-over-time': NumberSequencesOverTimeComponent;
|
|
2003
2117
|
}
|
|
2004
2118
|
}
|
|
2005
2119
|
}
|
|
@@ -2007,10 +2121,7 @@ declare global {
|
|
|
2007
2121
|
|
|
2008
2122
|
declare global {
|
|
2009
2123
|
interface HTMLElementTagNameMap {
|
|
2010
|
-
'gs-
|
|
2011
|
-
}
|
|
2012
|
-
interface HTMLElementEventMap {
|
|
2013
|
-
[gsEventNames.textFilterChanged]: TextFilterChangedEvent;
|
|
2124
|
+
'gs-mutations-over-time': MutationsOverTimeComponent;
|
|
2014
2125
|
}
|
|
2015
2126
|
}
|
|
2016
2127
|
|
|
@@ -2018,7 +2129,7 @@ declare global {
|
|
|
2018
2129
|
declare global {
|
|
2019
2130
|
namespace React.JSX {
|
|
2020
2131
|
interface IntrinsicElements {
|
|
2021
|
-
'gs-
|
|
2132
|
+
'gs-mutations-over-time': MutationsOverTimeComponent;
|
|
2022
2133
|
}
|
|
2023
2134
|
}
|
|
2024
2135
|
}
|
|
@@ -2026,10 +2137,7 @@ declare global {
|
|
|
2026
2137
|
|
|
2027
2138
|
declare global {
|
|
2028
2139
|
interface HTMLElementTagNameMap {
|
|
2029
|
-
'gs-
|
|
2030
|
-
}
|
|
2031
|
-
interface HTMLElementEventMap {
|
|
2032
|
-
[gsEventNames.mutationFilterChanged]: CustomEvent<MutationsFilter>;
|
|
2140
|
+
'gs-queries-over-time': QueriesOverTimeComponent;
|
|
2033
2141
|
}
|
|
2034
2142
|
}
|
|
2035
2143
|
|
|
@@ -2037,7 +2145,7 @@ declare global {
|
|
|
2037
2145
|
declare global {
|
|
2038
2146
|
namespace React.JSX {
|
|
2039
2147
|
interface IntrinsicElements {
|
|
2040
|
-
'gs-
|
|
2148
|
+
'gs-queries-over-time': QueriesOverTimeComponent;
|
|
2041
2149
|
}
|
|
2042
2150
|
}
|
|
2043
2151
|
}
|
|
@@ -2045,11 +2153,7 @@ declare global {
|
|
|
2045
2153
|
|
|
2046
2154
|
declare global {
|
|
2047
2155
|
interface HTMLElementTagNameMap {
|
|
2048
|
-
'gs-
|
|
2049
|
-
}
|
|
2050
|
-
interface HTMLElementEventMap {
|
|
2051
|
-
[gsEventNames.lineageFilterChanged]: LineageFilterChangedEvent;
|
|
2052
|
-
[gsEventNames.lineageFilterMultiChanged]: LineageMultiFilterChangedEvent;
|
|
2156
|
+
'gs-statistics': StatisticsComponent;
|
|
2053
2157
|
}
|
|
2054
2158
|
}
|
|
2055
2159
|
|
|
@@ -2057,7 +2161,7 @@ declare global {
|
|
|
2057
2161
|
declare global {
|
|
2058
2162
|
namespace React.JSX {
|
|
2059
2163
|
interface IntrinsicElements {
|
|
2060
|
-
'gs-
|
|
2164
|
+
'gs-statistics': StatisticsComponent;
|
|
2061
2165
|
}
|
|
2062
2166
|
}
|
|
2063
2167
|
}
|
|
@@ -2065,11 +2169,7 @@ declare global {
|
|
|
2065
2169
|
|
|
2066
2170
|
declare global {
|
|
2067
2171
|
interface HTMLElementTagNameMap {
|
|
2068
|
-
'gs-
|
|
2069
|
-
}
|
|
2070
|
-
interface HTMLElementEventMap {
|
|
2071
|
-
[gsEventNames.numberRangeFilterChanged]: NumberRangeFilterChangedEvent;
|
|
2072
|
-
[gsEventNames.numberRangeValueChanged]: NumberRangeValueChangedEvent;
|
|
2172
|
+
'gs-sequences-by-location': SequencesByLocationComponent;
|
|
2073
2173
|
}
|
|
2074
2174
|
}
|
|
2075
2175
|
|
|
@@ -2077,7 +2177,7 @@ declare global {
|
|
|
2077
2177
|
declare global {
|
|
2078
2178
|
namespace React.JSX {
|
|
2079
2179
|
interface IntrinsicElements {
|
|
2080
|
-
'gs-
|
|
2180
|
+
'gs-sequences-by-location': SequencesByLocationComponent;
|
|
2081
2181
|
}
|
|
2082
2182
|
}
|
|
2083
2183
|
}
|