@genspectrum/dashboard-components 1.16.0 → 1.18.0

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Files changed (42) hide show
  1. package/custom-elements.json +7 -7
  2. package/dist/components.d.ts +145 -45
  3. package/dist/components.js +524 -291
  4. package/dist/components.js.map +1 -1
  5. package/dist/util.d.ts +215 -55
  6. package/package.json +1 -1
  7. package/src/preact/MutationAnnotationsContext.spec.tsx +82 -10
  8. package/src/preact/MutationAnnotationsContext.tsx +93 -45
  9. package/src/preact/components/annotated-mutation.stories.tsx +31 -0
  10. package/src/preact/components/annotated-mutation.tsx +5 -5
  11. package/src/preact/components/csv-download-button.tsx +22 -14
  12. package/src/preact/components/features-over-time-grid.tsx +189 -43
  13. package/src/preact/components/mutations-over-time-mutations-filter.stories.tsx +1 -1
  14. package/src/preact/components/mutations-over-time-mutations-filter.tsx +1 -1
  15. package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutationsByDay/aminoAcidMutationsOverTimePage1.json +52 -0
  16. package/src/preact/mutationsOverTime/__mockData__/byWeek/mutationsOverTimePage1.json +76 -0
  17. package/src/preact/mutationsOverTime/__mockData__/defaultMockData/mockDefaultMutationsOverTimeWithFilter.json +43 -0
  18. package/src/preact/mutationsOverTime/__mockData__/defaultMockData/mutationsOverTimePage1.json +126 -0
  19. package/src/preact/mutationsOverTime/__mockData__/defaultMockData/mutationsOverTimePage2.json +116 -0
  20. package/src/preact/mutationsOverTime/__mockData__/defaultMockData/mutationsOverTimePageSize20.json +216 -0
  21. package/src/preact/mutationsOverTime/getFilteredMutationCodes.spec.ts +236 -0
  22. package/src/preact/mutationsOverTime/{getFilteredMutationsOverTimeData.ts → getFilteredMutationCodes.ts} +34 -49
  23. package/src/preact/mutationsOverTime/mutations-over-time.stories.tsx +128 -23
  24. package/src/preact/mutationsOverTime/mutations-over-time.tsx +139 -74
  25. package/src/preact/mutationsOverTime/useMutationsOverTimePageData.ts +111 -0
  26. package/src/preact/shared/tanstackTable/pagination-context.tsx +5 -2
  27. package/src/preact/shared/tanstackTable/pagination.tsx +11 -9
  28. package/src/preact/shared/tanstackTable/tanstackTable.tsx +7 -4
  29. package/src/preact/wastewater/mutationsOverTime/wastewater-mutations-over-time.tsx +1 -1
  30. package/src/query/queryMutationsOverTime.spec.ts +187 -662
  31. package/src/query/queryMutationsOverTime.ts +46 -33
  32. package/src/utils/useControlledState.ts +15 -0
  33. package/src/web-components/gs-app.ts +8 -4
  34. package/src/web-components/mutation-annotations-context.ts +13 -5
  35. package/src/web-components/mutationAnnotations.mdx +29 -0
  36. package/src/web-components/visualization/gs-mutations-over-time.stories.ts +78 -22
  37. package/standalone-bundle/dashboard-components.js +6914 -6701
  38. package/standalone-bundle/dashboard-components.js.map +1 -1
  39. package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutationsByDay/aminoAcidMutationsOverTime.json +0 -5496
  40. package/src/preact/mutationsOverTime/__mockData__/byWeek/mutationsOverTime.json +0 -7100
  41. package/src/preact/mutationsOverTime/__mockData__/defaultMockData/mutationsOverTime.json +0 -12646
  42. package/src/preact/mutationsOverTime/getFilteredMutationsOverTime.spec.ts +0 -417
@@ -246,10 +246,10 @@
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  "kind": "field",
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  "name": "mutationAnnotations",
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  "type": {
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- "text": "{\n name: string;\n description: string;\n symbol: string;\n nucleotideMutations?: string[];\n nucleotidePositions?: string[];\n aminoAcidMutations?: string[];\n aminoAcidPositions?: string[];\n }[]"
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+ "text": "{\n name: string;\n description: string;\n symbol: string;\n nucleotideMutations?: (string | { mutation: string; name?: string; description?: string })[];\n nucleotidePositions?: (string | { position: string; name?: string; description?: string })[];\n aminoAcidMutations?: (string | { mutation: string; name?: string; description?: string })[];\n aminoAcidPositions?: (string | { position: string; name?: string; description?: string })[];\n }[]"
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  },
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  "default": "[]",
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- "description": "Supply lists of mutations that are especially relevant for the current organism.\n\nVisit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-mutation-annotations--docs for more information.",
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+ "description": "Supply lists of mutations that are especially relevant for the current organism.\n\nEach entry in `nucleotideMutations`, `aminoAcidMutations`, `nucleotidePositions`, and `aminoAcidPositions`\ncan be either a plain string or an object with an optional `name` and `description` that override the\ngroup-level values in the annotation popup for that specific mutation or position.\n\nVisit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-mutation-annotations--docs for more information.",
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  "attribute": "mutationAnnotations"
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  },
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  {
@@ -276,10 +276,10 @@
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  {
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  "name": "mutationAnnotations",
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  "type": {
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- "text": "{\n name: string;\n description: string;\n symbol: string;\n nucleotideMutations?: string[];\n nucleotidePositions?: string[];\n aminoAcidMutations?: string[];\n aminoAcidPositions?: string[];\n }[]"
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+ "text": "{\n name: string;\n description: string;\n symbol: string;\n nucleotideMutations?: (string | { mutation: string; name?: string; description?: string })[];\n nucleotidePositions?: (string | { position: string; name?: string; description?: string })[];\n aminoAcidMutations?: (string | { mutation: string; name?: string; description?: string })[];\n aminoAcidPositions?: (string | { position: string; name?: string; description?: string })[];\n }[]"
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  },
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  "default": "[]",
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- "description": "Supply lists of mutations that are especially relevant for the current organism.\n\nVisit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-mutation-annotations--docs for more information.",
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+ "description": "Supply lists of mutations that are especially relevant for the current organism.\n\nEach entry in `nucleotideMutations`, `aminoAcidMutations`, `nucleotidePositions`, and `aminoAcidPositions`\ncan be either a plain string or an object with an optional `name` and `description` that override the\ngroup-level values in the annotation popup for that specific mutation or position.\n\nVisit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-mutation-annotations--docs for more information.",
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  "fieldName": "mutationAnnotations"
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  },
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  {
@@ -2717,7 +2717,7 @@
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  "type": {
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  "text": "Meta<Required<MutationsOverTimeProps>>"
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  },
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- "default": "{ title: 'Visualization/Mutations over time', component: 'gs-mutations-over-time', argTypes: { lapisFilter: { control: 'object' }, sequenceType: { options: ['nucleotide', 'amino acid'], control: { type: 'radio' }, }, views: { options: ['grid'], control: { type: 'check' }, }, width: { control: 'text' }, height: { control: 'text' }, granularity: { options: ['day', 'week', 'month', 'year'], control: { type: 'radio' }, }, lapisDateField: { control: 'text' }, displayMutations: { control: 'object' }, initialMeanProportionInterval: { control: 'object' }, hideGaps: { control: 'boolean' }, pageSizes: { control: 'object' }, customColumns: { control: 'object' }, }, args: { lapisFilter: { pangoLineage: 'JN.1*', dateFrom: '2024-01-15', dateTo: '2024-07-10' }, sequenceType: 'nucleotide', views: ['grid'], width: '100%', granularity: 'month', lapisDateField: 'date', initialMeanProportionInterval: { min: 0.05, max: 0.9 }, hideGaps: false, pageSizes: [10, 20, 30, 40, 50], }, parameters: withComponentDocs({ componentDocs: { opensShadowDom: true, expectsChildren: false, codeExample, }, fetchMock: { mocks: [ { matcher: { url: `${LAPIS_URL}/sample/nucleotideMutations`, body: { pangoLineage: 'JN.1*', dateFrom: '2024-01-01', dateTo: '2024-07-31', minProportion: 0.001, }, response: { status: 200, body: mockDefaultNucleotideMutations, }, }, }, { matcher: { url: `${LAPIS_URL}/component/nucleotideMutationsOverTime`, body: { filters: { pangoLineage: 'JN.1*', dateFrom: '2024-01-15', dateTo: '2024-07-10', }, dateRanges: [ { dateFrom: '2024-01-01', dateTo: '2024-01-31' }, { dateFrom: '2024-02-01', dateTo: '2024-02-29' }, { dateFrom: '2024-03-01', dateTo: '2024-03-31' }, { dateFrom: '2024-04-01', dateTo: '2024-04-30' }, { dateFrom: '2024-05-01', dateTo: '2024-05-31' }, { dateFrom: '2024-06-01', dateTo: '2024-06-30' }, { dateFrom: '2024-07-01', dateTo: '2024-07-31' }, ], dateField: 'date', }, matchPartialBody: true, response: { status: 200, body: mockDefaultMutationsOverTime, }, }, }, ], }, }), tags: ['autodocs'], }"
2720
+ "default": "{ title: 'Visualization/Mutations over time', component: 'gs-mutations-over-time', argTypes: { lapisFilter: { control: 'object' }, sequenceType: { options: ['nucleotide', 'amino acid'], control: { type: 'radio' }, }, views: { options: ['grid'], control: { type: 'check' }, }, width: { control: 'text' }, height: { control: 'text' }, granularity: { options: ['day', 'week', 'month', 'year'], control: { type: 'radio' }, }, lapisDateField: { control: 'text' }, displayMutations: { control: 'object' }, initialMeanProportionInterval: { control: 'object' }, hideGaps: { control: 'boolean' }, pageSizes: { control: 'object' }, customColumns: { control: 'object' }, }, args: { lapisFilter: { pangoLineage: 'JN.1*', dateFrom: '2024-01-15', dateTo: '2024-07-10' }, sequenceType: 'nucleotide', views: ['grid'], width: '100%', granularity: 'month', lapisDateField: 'date', initialMeanProportionInterval: { min: 0.05, max: 0.9 }, hideGaps: false, pageSizes: [10, 20, 30, 40, 50], }, parameters: withComponentDocs({ componentDocs: { opensShadowDom: true, expectsChildren: false, codeExample, }, fetchMock: { mocks: [ { matcher: { url: `${LAPIS_URL}/sample/nucleotideMutations`, body: { pangoLineage: 'JN.1*', dateFrom: '2024-01-01', dateTo: '2024-07-31', minProportion: 0.001, }, response: { status: 200, body: mockDefaultNucleotideMutations, }, }, }, { matcher: { url: `${LAPIS_URL}/component/nucleotideMutationsOverTime`, body: { filters: { pangoLineage: 'JN.1*', dateFrom: '2024-01-15', dateTo: '2024-07-10' }, dateRanges: [ { dateFrom: '2024-01-01', dateTo: '2024-01-31' }, { dateFrom: '2024-02-01', dateTo: '2024-02-29' }, { dateFrom: '2024-03-01', dateTo: '2024-03-31' }, { dateFrom: '2024-04-01', dateTo: '2024-04-30' }, { dateFrom: '2024-05-01', dateTo: '2024-05-31' }, { dateFrom: '2024-06-01', dateTo: '2024-06-30' }, { dateFrom: '2024-07-01', dateTo: '2024-07-31' }, ], includeMutations: [ 'C44T', 'C774T', 'C7113T', 'C12616T', 'A13121T', 'G15372T', 'G17334T', 'T18453C', 'A19722G', 'T21653-', ], dateField: 'date', }, response: { status: 200, body: mockDefaultMutationsOverTimePage1, }, }, }, { matcher: { name: 'downloadData', url: `${LAPIS_URL}/component/nucleotideMutationsOverTime`, body: { filters: { pangoLineage: 'JN.1*', dateFrom: '2024-01-15', dateTo: '2024-07-10' }, dateRanges: [ { dateFrom: '2024-01-01', dateTo: '2024-01-31' }, { dateFrom: '2024-02-01', dateTo: '2024-02-29' }, { dateFrom: '2024-03-01', dateTo: '2024-03-31' }, { dateFrom: '2024-04-01', dateTo: '2024-04-30' }, { dateFrom: '2024-05-01', dateTo: '2024-05-31' }, { dateFrom: '2024-06-01', dateTo: '2024-06-30' }, { dateFrom: '2024-07-01', dateTo: '2024-07-31' }, ], includeMutations: [ 'C44T', 'C774T', 'C7113T', 'C12616T', 'A13121T', 'G15372T', 'G17334T', 'T18453C', 'A19722G', 'T21653-', 'C21654-', 'T21655-', 'G22111T', 'G22599C', 'T22928C', 'T23011-', 'C23039G', 'C23277T', 'G24872T', ], dateField: 'date', }, response: { status: 200, body: mockDefaultMutationsOverTimePageSize20, }, }, }, ], }, }), tags: ['autodocs'], }"
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  },
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  {
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  "kind": "variable",
@@ -2749,7 +2749,7 @@
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  "type": {
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  "text": "StoryObj<Required<MutationsOverTimeProps>>"
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  },
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- "default": "{ ...Template, args: { ...Template.args, lapisFilter: { pangoLineage: 'JN.1*', dateFrom: '2024-01-15', dateTo: '2024-02-11' }, granularity: 'week', }, parameters: { fetchMock: { mocks: [ { matcher: { url: `${LAPIS_URL}/sample/nucleotideMutations`, body: { pangoLineage: 'JN.1*', dateFrom: '2024-01-15', dateTo: '2024-02-11', minProportion: 0.001, }, response: { status: 200, body: mockByWeekNucleotideMutations, }, }, }, { matcher: { url: `${LAPIS_URL}/component/nucleotideMutationsOverTime`, body: { filters: { pangoLineage: 'JN.1*', dateFrom: '2024-01-15', dateTo: '2024-02-11', }, dateRanges: [ { dateFrom: '2024-01-15', dateTo: '2024-01-21' }, { dateFrom: '2024-01-22', dateTo: '2024-01-28' }, { dateFrom: '2024-01-29', dateTo: '2024-02-04' }, { dateFrom: '2024-02-05', dateTo: '2024-02-11' }, ], dateField: 'date', }, matchPartialBody: true, response: { status: 200, body: mockByWeekMutationsOverTime, }, }, }, ], }, }, }"
2752
+ "default": "{ ...Template, args: { ...Template.args, lapisFilter: { pangoLineage: 'JN.1*', dateFrom: '2024-01-15', dateTo: '2024-02-11' }, granularity: 'week', }, parameters: { fetchMock: { mocks: [ { matcher: { url: `${LAPIS_URL}/sample/nucleotideMutations`, body: { pangoLineage: 'JN.1*', dateFrom: '2024-01-15', dateTo: '2024-02-11', minProportion: 0.001, }, response: { status: 200, body: mockByWeekNucleotideMutations, }, }, }, { matcher: { url: `${LAPIS_URL}/component/nucleotideMutationsOverTime`, body: { filters: { pangoLineage: 'JN.1*', dateFrom: '2024-01-15', dateTo: '2024-02-11' }, dateRanges: [ { dateFrom: '2024-01-15', dateTo: '2024-01-21' }, { dateFrom: '2024-01-22', dateTo: '2024-01-28' }, { dateFrom: '2024-01-29', dateTo: '2024-02-04' }, { dateFrom: '2024-02-05', dateTo: '2024-02-11' }, ], includeMutations: [ 'C44T', 'C774T', 'C1762A', 'C11747T', 'G17562T', 'T18453C', 'G21641T', 'C23277T', 'C29870A', ], dateField: 'date', }, matchPartialBody: true, response: { status: 200, body: mockByWeekMutationsOverTimePage1, }, }, }, ], }, }, }"
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  },
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  {
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  "kind": "variable",
@@ -2757,7 +2757,7 @@
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  "type": {
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  "text": "StoryObj<Required<MutationsOverTimeProps>>"
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  },
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- "default": "{ ...Template, args: { ...Template.args, lapisFilter: { pangoLineage: 'JN.1*', dateFrom: '2024-01-20', dateTo: '2024-01-26' }, granularity: 'day', sequenceType: 'amino acid', }, parameters: { fetchMock: { mocks: [ { matcher: { url: `${LAPIS_URL}/sample/aminoAcidMutations`, body: { pangoLineage: 'JN.1*', dateFrom: '2024-01-20', dateTo: '2024-01-26', minProportion: 0.001, }, response: { status: 200, body: mockAminoAcidMutationsByDayAminoAcidMutations, }, }, }, { matcher: { url: `${LAPIS_URL}/component/aminoAcidMutationsOverTime`, body: { filters: { pangoLineage: 'JN.1*', dateFrom: '2024-01-20', dateTo: '2024-01-26', }, dateRanges: [ { dateFrom: '2024-01-20', dateTo: '2024-01-20' }, { dateFrom: '2024-01-21', dateTo: '2024-01-21' }, { dateFrom: '2024-01-22', dateTo: '2024-01-22' }, { dateFrom: '2024-01-23', dateTo: '2024-01-23' }, { dateFrom: '2024-01-24', dateTo: '2024-01-24' }, { dateFrom: '2024-01-25', dateTo: '2024-01-25' }, { dateFrom: '2024-01-26', dateTo: '2024-01-26' }, ], dateField: 'date', }, matchPartialBody: true, response: { status: 200, body: mockAminoAcidMutationsByDayAminoAcidMutationsOverTime, }, }, }, ], }, }, }"
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+ "default": "{ ...Template, args: { ...Template.args, lapisFilter: { pangoLineage: 'JN.1*', dateFrom: '2024-01-20', dateTo: '2024-01-26' }, granularity: 'day', sequenceType: 'amino acid', }, parameters: { fetchMock: { mocks: [ { matcher: { url: `${LAPIS_URL}/sample/aminoAcidMutations`, body: { pangoLineage: 'JN.1*', dateFrom: '2024-01-20', dateTo: '2024-01-26', minProportion: 0.001, }, response: { status: 200, body: mockAminoAcidMutationsByDayAminoAcidMutations, }, }, }, { matcher: { url: `${LAPIS_URL}/component/aminoAcidMutationsOverTime`, body: { filters: { pangoLineage: 'JN.1*', dateFrom: '2024-01-20', dateTo: '2024-01-26' }, dateRanges: [ { dateFrom: '2024-01-20', dateTo: '2024-01-20' }, { dateFrom: '2024-01-21', dateTo: '2024-01-21' }, { dateFrom: '2024-01-22', dateTo: '2024-01-22' }, { dateFrom: '2024-01-23', dateTo: '2024-01-23' }, { dateFrom: '2024-01-24', dateTo: '2024-01-24' }, { dateFrom: '2024-01-25', dateTo: '2024-01-25' }, { dateFrom: '2024-01-26', dateTo: '2024-01-26' }, ], includeMutations: ['ORF1a:T170I', 'ORF1a:F499L', 'S:T572I'], dateField: 'date', }, matchPartialBody: true, response: { status: 200, body: mockAminoAcidMutationsByDayAminoAcidMutationsOverTimePage1, }, }, }, ], }, }, }"
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  },
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  {
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  "kind": "variable",
@@ -118,16 +118,36 @@ export declare class AppComponent extends LitElement {
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  /**
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  * Supply lists of mutations that are especially relevant for the current organism.
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  *
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+ * Each entry in `nucleotideMutations`, `aminoAcidMutations`, `nucleotidePositions`, and `aminoAcidPositions`
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+ * can be either a plain string or an object with an optional `name` and `description` that override the
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+ * group-level values in the annotation popup for that specific mutation or position.
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+ *
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  * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-mutation-annotations--docs for more information.
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  */
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  mutationAnnotations: {
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  name: string;
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  description: string;
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  symbol: string;
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- nucleotideMutations?: string[];
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- nucleotidePositions?: string[];
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- aminoAcidMutations?: string[];
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- aminoAcidPositions?: string[];
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+ nucleotideMutations?: (string | {
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+ mutation: string;
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+ name?: string;
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+ description?: string;
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+ })[];
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+ nucleotidePositions?: (string | {
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+ position: string;
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+ name?: string;
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+ description?: string;
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+ })[];
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+ aminoAcidMutations?: (string | {
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+ mutation: string;
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+ name?: string;
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+ description?: string;
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+ })[];
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+ aminoAcidPositions?: (string | {
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+ position: string;
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+ name?: string;
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+ description?: string;
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+ })[];
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  }[];
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  /**
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  * Supply a link template for nucleotide and amino acid mutations.
@@ -428,26 +448,106 @@ declare const mutationAnnotationsSchema: default_2.ZodArray<default_2.ZodObject<
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  name: default_2.ZodString;
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  description: default_2.ZodString;
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  symbol: default_2.ZodString;
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- nucleotideMutations: default_2.ZodOptional<default_2.ZodArray<default_2.ZodString, "many">>;
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- nucleotidePositions: default_2.ZodOptional<default_2.ZodArray<default_2.ZodString, "many">>;
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- aminoAcidMutations: default_2.ZodOptional<default_2.ZodArray<default_2.ZodString, "many">>;
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- aminoAcidPositions: default_2.ZodOptional<default_2.ZodArray<default_2.ZodString, "many">>;
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+ nucleotideMutations: default_2.ZodOptional<default_2.ZodArray<default_2.ZodUnion<[default_2.ZodString, default_2.ZodObject<{
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+ mutation: default_2.ZodString;
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+ name: default_2.ZodOptional<default_2.ZodString>;
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+ description: default_2.ZodOptional<default_2.ZodString>;
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+ }, "strip", default_2.ZodTypeAny, {
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+ mutation: string;
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+ name?: string | undefined;
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+ description?: string | undefined;
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+ }, {
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+ mutation: string;
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+ name?: string | undefined;
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+ description?: string | undefined;
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+ }>]>, "many">>;
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+ nucleotidePositions: default_2.ZodOptional<default_2.ZodArray<default_2.ZodUnion<[default_2.ZodString, default_2.ZodObject<{
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+ position: default_2.ZodString;
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+ name: default_2.ZodOptional<default_2.ZodString>;
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+ description: default_2.ZodOptional<default_2.ZodString>;
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+ }, "strip", default_2.ZodTypeAny, {
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+ position: string;
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+ name?: string | undefined;
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+ description?: string | undefined;
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+ }, {
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+ position: string;
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+ name?: string | undefined;
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+ description?: string | undefined;
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+ }>]>, "many">>;
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+ aminoAcidMutations: default_2.ZodOptional<default_2.ZodArray<default_2.ZodUnion<[default_2.ZodString, default_2.ZodObject<{
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+ mutation: default_2.ZodString;
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+ name: default_2.ZodOptional<default_2.ZodString>;
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+ description: default_2.ZodOptional<default_2.ZodString>;
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+ }, "strip", default_2.ZodTypeAny, {
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+ mutation: string;
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+ name?: string | undefined;
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+ description?: string | undefined;
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+ }, {
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+ mutation: string;
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+ name?: string | undefined;
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+ description?: string | undefined;
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+ }>]>, "many">>;
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+ aminoAcidPositions: default_2.ZodOptional<default_2.ZodArray<default_2.ZodUnion<[default_2.ZodString, default_2.ZodObject<{
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+ position: default_2.ZodString;
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+ name: default_2.ZodOptional<default_2.ZodString>;
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+ description: default_2.ZodOptional<default_2.ZodString>;
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+ }, "strip", default_2.ZodTypeAny, {
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+ position: string;
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+ name?: string | undefined;
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+ description?: string | undefined;
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+ }, {
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+ position: string;
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+ name?: string | undefined;
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+ description?: string | undefined;
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+ }>]>, "many">>;
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  }, "strip", default_2.ZodTypeAny, {
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  symbol: string;
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  name: string;
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  description: string;
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- nucleotideMutations?: string[] | undefined;
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- nucleotidePositions?: string[] | undefined;
441
- aminoAcidMutations?: string[] | undefined;
442
- aminoAcidPositions?: string[] | undefined;
507
+ nucleotideMutations?: (string | {
508
+ mutation: string;
509
+ name?: string | undefined;
510
+ description?: string | undefined;
511
+ })[] | undefined;
512
+ nucleotidePositions?: (string | {
513
+ position: string;
514
+ name?: string | undefined;
515
+ description?: string | undefined;
516
+ })[] | undefined;
517
+ aminoAcidMutations?: (string | {
518
+ mutation: string;
519
+ name?: string | undefined;
520
+ description?: string | undefined;
521
+ })[] | undefined;
522
+ aminoAcidPositions?: (string | {
523
+ position: string;
524
+ name?: string | undefined;
525
+ description?: string | undefined;
526
+ })[] | undefined;
443
527
  }, {
444
528
  symbol: string;
445
529
  name: string;
446
530
  description: string;
447
- nucleotideMutations?: string[] | undefined;
448
- nucleotidePositions?: string[] | undefined;
449
- aminoAcidMutations?: string[] | undefined;
450
- aminoAcidPositions?: string[] | undefined;
531
+ nucleotideMutations?: (string | {
532
+ mutation: string;
533
+ name?: string | undefined;
534
+ description?: string | undefined;
535
+ })[] | undefined;
536
+ nucleotidePositions?: (string | {
537
+ position: string;
538
+ name?: string | undefined;
539
+ description?: string | undefined;
540
+ })[] | undefined;
541
+ aminoAcidMutations?: (string | {
542
+ mutation: string;
543
+ name?: string | undefined;
544
+ description?: string | undefined;
545
+ })[] | undefined;
546
+ aminoAcidPositions?: (string | {
547
+ position: string;
548
+ name?: string | undefined;
549
+ description?: string | undefined;
550
+ })[] | undefined;
451
551
  }>, "many">;
452
552
 
453
553
  /**
@@ -1856,7 +1956,7 @@ declare global {
1856
1956
 
1857
1957
  declare global {
1858
1958
  interface HTMLElementTagNameMap {
1859
- 'gs-number-sequences-over-time': NumberSequencesOverTimeComponent;
1959
+ 'gs-aggregate': AggregateComponent;
1860
1960
  }
1861
1961
  }
1862
1962
 
@@ -1864,7 +1964,7 @@ declare global {
1864
1964
  declare global {
1865
1965
  namespace React.JSX {
1866
1966
  interface IntrinsicElements {
1867
- 'gs-number-sequences-over-time': NumberSequencesOverTimeComponent;
1967
+ 'gs-aggregate': AggregateComponent;
1868
1968
  }
1869
1969
  }
1870
1970
  }
@@ -1872,7 +1972,7 @@ declare global {
1872
1972
 
1873
1973
  declare global {
1874
1974
  interface HTMLElementTagNameMap {
1875
- 'gs-aggregate': AggregateComponent;
1975
+ 'gs-number-sequences-over-time': NumberSequencesOverTimeComponent;
1876
1976
  }
1877
1977
  }
1878
1978
 
@@ -1880,7 +1980,7 @@ declare global {
1880
1980
  declare global {
1881
1981
  namespace React.JSX {
1882
1982
  interface IntrinsicElements {
1883
- 'gs-aggregate': AggregateComponent;
1983
+ 'gs-number-sequences-over-time': NumberSequencesOverTimeComponent;
1884
1984
  }
1885
1985
  }
1886
1986
  }
@@ -1920,7 +2020,7 @@ declare global {
1920
2020
 
1921
2021
  declare global {
1922
2022
  interface HTMLElementTagNameMap {
1923
- 'gs-statistics': StatisticsComponent;
2023
+ 'gs-sequences-by-location': SequencesByLocationComponent;
1924
2024
  }
1925
2025
  }
1926
2026
 
@@ -1928,7 +2028,7 @@ declare global {
1928
2028
  declare global {
1929
2029
  namespace React.JSX {
1930
2030
  interface IntrinsicElements {
1931
- 'gs-statistics': StatisticsComponent;
2031
+ 'gs-sequences-by-location': SequencesByLocationComponent;
1932
2032
  }
1933
2033
  }
1934
2034
  }
@@ -1936,7 +2036,7 @@ declare global {
1936
2036
 
1937
2037
  declare global {
1938
2038
  interface HTMLElementTagNameMap {
1939
- 'gs-sequences-by-location': SequencesByLocationComponent;
2039
+ 'gs-statistics': StatisticsComponent;
1940
2040
  }
1941
2041
  }
1942
2042
 
@@ -1944,7 +2044,7 @@ declare global {
1944
2044
  declare global {
1945
2045
  namespace React.JSX {
1946
2046
  interface IntrinsicElements {
1947
- 'gs-sequences-by-location': SequencesByLocationComponent;
2047
+ 'gs-statistics': StatisticsComponent;
1948
2048
  }
1949
2049
  }
1950
2050
  }
@@ -1952,7 +2052,10 @@ declare global {
1952
2052
 
1953
2053
  declare global {
1954
2054
  interface HTMLElementTagNameMap {
1955
- 'gs-wastewater-mutations-over-time': WastewaterMutationsOverTimeComponent;
2055
+ 'gs-location-filter': LocationFilterComponent;
2056
+ }
2057
+ interface HTMLElementEventMap {
2058
+ [gsEventNames.locationChanged]: LocationChangedEvent;
1956
2059
  }
1957
2060
  }
1958
2061
 
@@ -1960,7 +2063,7 @@ declare global {
1960
2063
  declare global {
1961
2064
  namespace React.JSX {
1962
2065
  interface IntrinsicElements {
1963
- 'gs-wastewater-mutations-over-time': WastewaterMutationsOverTimeComponent;
2066
+ 'gs-location-filter': LocationFilterComponent;
1964
2067
  }
1965
2068
  }
1966
2069
  }
@@ -1968,11 +2071,10 @@ declare global {
1968
2071
 
1969
2072
  declare global {
1970
2073
  interface HTMLElementTagNameMap {
1971
- 'gs-date-range-filter': DateRangeFilterComponent;
2074
+ 'gs-text-filter': TextFilterComponent;
1972
2075
  }
1973
2076
  interface HTMLElementEventMap {
1974
- [gsEventNames.dateRangeFilterChanged]: CustomEvent<Record<string, string>>;
1975
- [gsEventNames.dateRangeOptionChanged]: DateRangeOptionChangedEvent;
2077
+ [gsEventNames.textFilterChanged]: TextFilterChangedEvent;
1976
2078
  }
1977
2079
  }
1978
2080
 
@@ -1980,7 +2082,7 @@ declare global {
1980
2082
  declare global {
1981
2083
  namespace React.JSX {
1982
2084
  interface IntrinsicElements {
1983
- 'gs-date-range-filter': DateRangeFilterComponent;
2085
+ 'gs-text-filter': TextFilterComponent;
1984
2086
  }
1985
2087
  }
1986
2088
  }
@@ -1988,10 +2090,11 @@ declare global {
1988
2090
 
1989
2091
  declare global {
1990
2092
  interface HTMLElementTagNameMap {
1991
- 'gs-location-filter': LocationFilterComponent;
2093
+ 'gs-date-range-filter': DateRangeFilterComponent;
1992
2094
  }
1993
2095
  interface HTMLElementEventMap {
1994
- [gsEventNames.locationChanged]: LocationChangedEvent;
2096
+ [gsEventNames.dateRangeFilterChanged]: CustomEvent<Record<string, string>>;
2097
+ [gsEventNames.dateRangeOptionChanged]: DateRangeOptionChangedEvent;
1995
2098
  }
1996
2099
  }
1997
2100
 
@@ -1999,7 +2102,7 @@ declare global {
1999
2102
  declare global {
2000
2103
  namespace React.JSX {
2001
2104
  interface IntrinsicElements {
2002
- 'gs-location-filter': LocationFilterComponent;
2105
+ 'gs-date-range-filter': DateRangeFilterComponent;
2003
2106
  }
2004
2107
  }
2005
2108
  }
@@ -2007,10 +2110,10 @@ declare global {
2007
2110
 
2008
2111
  declare global {
2009
2112
  interface HTMLElementTagNameMap {
2010
- 'gs-text-filter': TextFilterComponent;
2113
+ 'gs-mutation-filter': MutationFilterComponent;
2011
2114
  }
2012
2115
  interface HTMLElementEventMap {
2013
- [gsEventNames.textFilterChanged]: TextFilterChangedEvent;
2116
+ [gsEventNames.mutationFilterChanged]: CustomEvent<MutationsFilter>;
2014
2117
  }
2015
2118
  }
2016
2119
 
@@ -2018,7 +2121,7 @@ declare global {
2018
2121
  declare global {
2019
2122
  namespace React.JSX {
2020
2123
  interface IntrinsicElements {
2021
- 'gs-text-filter': TextFilterComponent;
2124
+ 'gs-mutation-filter': MutationFilterComponent;
2022
2125
  }
2023
2126
  }
2024
2127
  }
@@ -2026,10 +2129,11 @@ declare global {
2026
2129
 
2027
2130
  declare global {
2028
2131
  interface HTMLElementTagNameMap {
2029
- 'gs-mutation-filter': MutationFilterComponent;
2132
+ 'gs-number-range-filter': NumberRangeFilterComponent;
2030
2133
  }
2031
2134
  interface HTMLElementEventMap {
2032
- [gsEventNames.mutationFilterChanged]: CustomEvent<MutationsFilter>;
2135
+ [gsEventNames.numberRangeFilterChanged]: NumberRangeFilterChangedEvent;
2136
+ [gsEventNames.numberRangeValueChanged]: NumberRangeValueChangedEvent;
2033
2137
  }
2034
2138
  }
2035
2139
 
@@ -2037,7 +2141,7 @@ declare global {
2037
2141
  declare global {
2038
2142
  namespace React.JSX {
2039
2143
  interface IntrinsicElements {
2040
- 'gs-mutation-filter': MutationFilterComponent;
2144
+ 'gs-number-range-filter': NumberRangeFilterComponent;
2041
2145
  }
2042
2146
  }
2043
2147
  }
@@ -2065,11 +2169,7 @@ declare global {
2065
2169
 
2066
2170
  declare global {
2067
2171
  interface HTMLElementTagNameMap {
2068
- 'gs-number-range-filter': NumberRangeFilterComponent;
2069
- }
2070
- interface HTMLElementEventMap {
2071
- [gsEventNames.numberRangeFilterChanged]: NumberRangeFilterChangedEvent;
2072
- [gsEventNames.numberRangeValueChanged]: NumberRangeValueChangedEvent;
2172
+ 'gs-wastewater-mutations-over-time': WastewaterMutationsOverTimeComponent;
2073
2173
  }
2074
2174
  }
2075
2175
 
@@ -2077,7 +2177,7 @@ declare global {
2077
2177
  declare global {
2078
2178
  namespace React.JSX {
2079
2179
  interface IntrinsicElements {
2080
- 'gs-number-range-filter': NumberRangeFilterComponent;
2180
+ 'gs-wastewater-mutations-over-time': WastewaterMutationsOverTimeComponent;
2081
2181
  }
2082
2182
  }
2083
2183
  }