@genspectrum/dashboard-components 1.16.0 → 1.17.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/custom-elements.json +3 -3
- package/dist/components.d.ts +4 -4
- package/dist/components.js +449 -246
- package/dist/components.js.map +1 -1
- package/dist/util.d.ts +6 -6
- package/package.json +1 -1
- package/src/preact/MutationAnnotationsContext.tsx +1 -1
- package/src/preact/components/csv-download-button.tsx +22 -14
- package/src/preact/components/features-over-time-grid.tsx +189 -43
- package/src/preact/components/mutations-over-time-mutations-filter.stories.tsx +1 -1
- package/src/preact/components/mutations-over-time-mutations-filter.tsx +1 -1
- package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutationsByDay/aminoAcidMutationsOverTimePage1.json +52 -0
- package/src/preact/mutationsOverTime/__mockData__/byWeek/mutationsOverTimePage1.json +76 -0
- package/src/preact/mutationsOverTime/__mockData__/defaultMockData/mockDefaultMutationsOverTimeWithFilter.json +43 -0
- package/src/preact/mutationsOverTime/__mockData__/defaultMockData/mutationsOverTimePage1.json +126 -0
- package/src/preact/mutationsOverTime/__mockData__/defaultMockData/mutationsOverTimePage2.json +116 -0
- package/src/preact/mutationsOverTime/__mockData__/defaultMockData/mutationsOverTimePageSize20.json +216 -0
- package/src/preact/mutationsOverTime/getFilteredMutationCodes.spec.ts +236 -0
- package/src/preact/mutationsOverTime/{getFilteredMutationsOverTimeData.ts → getFilteredMutationCodes.ts} +29 -44
- package/src/preact/mutationsOverTime/mutations-over-time.stories.tsx +128 -23
- package/src/preact/mutationsOverTime/mutations-over-time.tsx +139 -74
- package/src/preact/mutationsOverTime/useMutationsOverTimePageData.ts +111 -0
- package/src/preact/shared/tanstackTable/pagination-context.tsx +5 -2
- package/src/preact/shared/tanstackTable/pagination.tsx +11 -9
- package/src/preact/shared/tanstackTable/tanstackTable.tsx +7 -4
- package/src/preact/wastewater/mutationsOverTime/wastewater-mutations-over-time.tsx +1 -1
- package/src/query/queryMutationsOverTime.spec.ts +187 -662
- package/src/query/queryMutationsOverTime.ts +46 -33
- package/src/utils/useControlledState.ts +15 -0
- package/src/web-components/visualization/gs-mutations-over-time.stories.ts +78 -22
- package/standalone-bundle/dashboard-components.js +6872 -6690
- package/standalone-bundle/dashboard-components.js.map +1 -1
- package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutationsByDay/aminoAcidMutationsOverTime.json +0 -5496
- package/src/preact/mutationsOverTime/__mockData__/byWeek/mutationsOverTime.json +0 -7100
- package/src/preact/mutationsOverTime/__mockData__/defaultMockData/mutationsOverTime.json +0 -12646
- package/src/preact/mutationsOverTime/getFilteredMutationsOverTime.spec.ts +0 -417
package/dist/components.js
CHANGED
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@@ -11,7 +11,7 @@ import { Chart, registerables, Scale, BarController } from "chart.js";
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import { VennDiagramController, ArcSlice, extractSets } from "chartjs-chart-venn";
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import { autoUpdate, computePosition, offset, shift, flip } from "@floating-ui/dom";
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import { BarWithErrorBarsController, BarWithErrorBar } from "chartjs-chart-error-bars";
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import { createTable,
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import { createTable, getPaginationRowModel, getCoreRowModel, createColumnHelper } from "@tanstack/table-core";
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import { map, geoJson } from "leaflet";
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import * as topojson from "topojson-client";
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import flatpickr from "flatpickr";
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@@ -2070,7 +2070,7 @@ function replaceCssProperties(styleSheet2) {
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}
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}
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const tailwindStyle = `/*! tailwindcss v4.1.11 | MIT License | https://tailwindcss.com */
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--tw-outline-style{syntax:"*";inherits:false;initial-value:solid}@property --tw-blur{syntax:"*";inherits:false}@property --tw-brightness{syntax:"*";inherits:false}@property --tw-contrast{syntax:"*";inherits:false}@property --tw-grayscale{syntax:"*";inherits:false}@property --tw-hue-rotate{syntax:"*";inherits:false}@property --tw-invert{syntax:"*";inherits:false}@property --tw-opacity{syntax:"*";inherits:false}@property --tw-saturate{syntax:"*";inherits:false}@property --tw-sepia{syntax:"*";inherits:false}@property --tw-drop-shadow{syntax:"*";inherits:false}@property --tw-drop-shadow-color{syntax:"*";inherits:false}@property --tw-drop-shadow-alpha{syntax:"<percentage>";inherits:false;initial-value:100%}@property --tw-drop-shadow-size{syntax:"*";inherits:false}@property --tw-duration{syntax:"*";inherits:false}@property --tw-scale-x{syntax:"*";inherits:false;initial-value:1}@property --tw-scale-y{syntax:"*";inherits:false;initial-value:1}@property --tw-scale-z{syntax:"*";inherits:false;initial-value:1}
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1px 3px 0 var(--tw-shadow-color,#0000001a),0 1px 2px -1px var(--tw-shadow-color,#0000001a);box-shadow:var(--tw-inset-shadow),var(--tw-inset-ring-shadow),var(--tw-ring-offset-shadow),var(--tw-ring-shadow),var(--tw-shadow)}.shadow-lg{--tw-shadow:0 10px 15px -3px var(--tw-shadow-color,#0000001a),0 4px 6px -4px var(--tw-shadow-color,#0000001a);box-shadow:var(--tw-inset-shadow),var(--tw-inset-ring-shadow),var(--tw-ring-offset-shadow),var(--tw-ring-shadow),var(--tw-shadow)}.shadow-md{--tw-shadow:0 4px 6px -1px var(--tw-shadow-color,#0000001a),0 2px 4px -2px var(--tw-shadow-color,#0000001a);box-shadow:var(--tw-inset-shadow),var(--tw-inset-ring-shadow),var(--tw-ring-offset-shadow),var(--tw-ring-shadow),var(--tw-shadow)}.shadow-sm{--tw-shadow:0 1px 3px 0 var(--tw-shadow-color,#0000001a),0 1px 2px -1px var(--tw-shadow-color,#0000001a);box-shadow:var(--tw-inset-shadow),var(--tw-inset-ring-shadow),var(--tw-ring-offset-shadow),var(--tw-ring-shadow),var(--tw-shadow)}.shadow-xs{--tw-shadow:0 1px 2px 0 var(--tw-shadow-color,#0000000d);box-shadow:var(--tw-inset-shadow),var(--tw-inset-ring-shadow),var(--tw-ring-offset-shadow),var(--tw-ring-shadow),var(--tw-shadow)}.outline{outline-style:var(--tw-outline-style);outline-width:1px}.btn-ghost:not(.btn-active,:hover,:active:focus,:focus-visible){--btn-shadow:"";--btn-bg:#0000;--btn-border:#0000;--btn-noise:none}.btn-ghost:not(.btn-active,:hover,:active:focus,:focus-visible):not(:disabled,[disabled],.btn-disabled){--btn-fg:currentColor;outline-color:currentColor}@media (hover:none){.btn-ghost:hover:not(.btn-active,:active,:focus-visible,:disabled,[disabled],.btn-disabled){--btn-shadow:"";--btn-bg:#0000;--btn-border:#0000;--btn-noise:none;--btn-fg:currentColor}}.blur{--tw-blur:blur(8px);filter:var(--tw-blur,)var(--tw-brightness,)var(--tw-contrast,)var(--tw-grayscale,)var(--tw-hue-rotate,)var(--tw-invert,)var(--tw-saturate,)var(--tw-sepia,)var(--tw-drop-shadow,)}.filter{filter:var(--tw-blur,)var(--tw-brightness,)var(--tw-contrast,)var(--tw-grayscale,)var(--tw-hue-rotate,)var(--tw-invert,)var(--tw-saturate,)var(--tw-sepia,)var(--tw-drop-shadow,)}.transition-colors{transition-property:color,background-color,border-color,outline-color,text-decoration-color,fill,stroke,--tw-gradient-from,--tw-gradient-via,--tw-gradient-to;transition-timing-function:var(--tw-ease,var(--default-transition-timing-function));transition-duration:var(--tw-duration,var(--default-transition-duration))}.duration-150{--tw-duration:.15s;transition-duration:.15s}.btn-outline:not(.btn-active,:hover,:active:focus,:focus-visible,:disabled,[disabled],.btn-disabled,:checked){--btn-shadow:"";--btn-bg:#0000;--btn-fg:var(--btn-color);--btn-border:var(--btn-color);--btn-noise:none}@media (hover:none){.btn-outline:hover:not(.btn-active,:active,:focus-visible,:disabled,[disabled],.btn-disabled,:checked){--btn-shadow:"";--btn-bg:#0000;--btn-fg:var(--btn-color);--btn-border:var(--btn-color);--btn-noise:none}}.btn-sm{--fontsize:.75rem;--btn-p:.75rem;--size:calc(var(--size-field,.25rem)*8)}.btn-xs{--fontsize:.6875rem;--btn-p:.5rem;--size:calc(var(--size-field,.25rem)*6)}.select-text{-webkit-user-select:text;-moz-user-select:text;user-select:text}.input-error,.input-error:focus,.input-error:focus-within{--input-color:var(--color-error)}.mdi--chevron-left{--svg:url("data:image/svg+xml,%3Csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 24 24' width='24' height='24'%3E%3Cpath fill='black' d='M15.41 16.58L10.83 12l4.58-4.59L14 6l-6 6l6 6z'/%3E%3C/svg%3E")}.mdi--chevron-left-first{--svg:url("data:image/svg+xml,%3Csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 24 24' width='24' height='24'%3E%3Cpath fill='black' d='M18.41 16.59L13.82 12l4.59-4.59L17 6l-6 6l6 6zM6 6h2v12H6z'/%3E%3C/svg%3E")}.mdi--chevron-right{--svg:url("data:image/svg+xml,%3Csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 24 24' width='24' height='24'%3E%3Cpath fill='black' d='M8.59 16.58L13.17 12L8.59 7.41L10 6l6 6l-6 6z'/%3E%3C/svg%3E")}.mdi--chevron-right-last{--svg:url("data:image/svg+xml,%3Csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 24 24' width='24' height='24'%3E%3Cpath fill='black' d='M5.59 7.41L10.18 12l-4.59 4.59L7 18l6-6l-6-6zM16 6h2v12h-2z'/%3E%3C/svg%3E")}.mdi--fullscreen{--svg:url("data:image/svg+xml,%3Csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 24 24' width='24' height='24'%3E%3Cpath fill='black' d='M5 5h5v2H7v3H5zm9 0h5v5h-2V7h-3zm3 9h2v5h-5v-2h3zm-7 3v2H5v-5h2v3z'/%3E%3C/svg%3E")}.mdi--fullscreen-exit{--svg:url("data:image/svg+xml,%3Csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 24 24' width='24' height='24'%3E%3Cpath fill='black' d='M14 14h5v2h-3v3h-2zm-9 0h5v5H8v-3H5zm3-9h2v5H5V8h3zm11 3v2h-5V5h2v3z'/%3E%3C/svg%3E")}.mdi--reload{--svg:url("data:image/svg+xml,%3Csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 24 24' width='24' height='24'%3E%3Cpath fill='black' d='M2 12a9 9 0 0 0 9 9c2.39 0 4.68-.94 6.4-2.6l-1.5-1.5A6.7 6.7 0 0 1 11 19c-6.24 0-9.36-7.54-4.95-11.95S18 5.77 18 12h-3l4 4h.1l3.9-4h-3a9 9 0 0 0-18 0'/%3E%3C/svg%3E")}@media (hover:hover){.group-hover\\:visible:is(:where(.group):hover *){visibility:visible}.hover\\:scale-90:hover{--tw-scale-x:90%;--tw-scale-y:90%;--tw-scale-z:90%;scale:var(--tw-scale-x)var(--tw-scale-y)}.hover\\:scale-110:hover{--tw-scale-x:110%;--tw-scale-y:110%;--tw-scale-z:110%;scale:var(--tw-scale-x)var(--tw-scale-y)}.hover\\:bg-gray-100:hover{background-color:var(--color-gray-100)}.hover\\:font-bold:hover{--tw-font-weight:var(--font-weight-bold);font-weight:var(--font-weight-bold)}.hover\\:text-blue-700:hover{color:var(--color-blue-700)}.hover\\:text-blue-800:hover{color:var(--color-blue-800)}.hover\\:text-gray-400:hover{color:var(--color-gray-400)}.hover\\:text-gray-700:hover{color:var(--color-gray-700)}.hover\\:text-red-600:hover{color:var(--color-red-600)}.hover\\:underline:hover{text-decoration-line:underline}.hover\\:opacity-80:hover{opacity:.8}}.focus\\:ring-2:focus{--tw-ring-shadow:var(--tw-ring-inset,)0 0 0 calc(2px + var(--tw-ring-offset-width))var(--tw-ring-color,currentcolor);box-shadow:var(--tw-inset-shadow),var(--tw-inset-ring-shadow),var(--tw-ring-offset-shadow),var(--tw-ring-shadow),var(--tw-shadow)}.focus\\:ring-blue-300:focus{--tw-ring-color:var(--color-blue-300)}.focus\\:outline-none:focus{--tw-outline-style:none;outline-style:none}.focus-visible\\:underline:focus-visible{text-decoration-line:underline}@media (min-width:40rem){.sm\\:modal-middle{place-items:center}.sm\\:modal-middle :where(.modal-box){--modal-tl:var(--radius-box);--modal-tr:var(--radius-box);--modal-bl:var(--radius-box);--modal-br:var(--radius-box);width:91.6667%;max-width:32rem;height:auto;max-height:calc(100vh - 5em);translate:0 2%;scale:98%}.sm\\:max-w-5xl{max-width:var(--container-5xl)}.sm\\:flex-row{flex-direction:row}.sm\\:text-4xl{font-size:var(--text-4xl);line-height:var(--tw-leading,var(--text-4xl--line-height))}}@container (min-width:2rem){.\\@\\[2rem\\]\\:visible{visibility:visible}}@container (min-width:6rem){.\\@\\[6rem\\]\\:visible{visibility:visible}}@container (min-width:14rem){.\\@4xs\\:flex-row{flex-direction:row}.\\@4xs\\:rounded-l-none{border-top-left-radius:0;border-bottom-left-radius:0}.\\@4xs\\:rounded-tr-none{border-top-right-radius:0}.\\@4xs\\:rounded-bl-md{border-bottom-left-radius:var(--radius-md)}}@container (min-width:28rem){.\\@md\\:flex-row{flex-direction:row}.\\@md\\:rounded-l-md{border-top-left-radius:var(--radius-md);border-bottom-left-radius:var(--radius-md)}.\\@md\\:rounded-l-none{border-top-left-radius:0;border-bottom-left-radius:0}.\\@md\\:rounded-r-md{border-top-right-radius:var(--radius-md);border-bottom-right-radius:var(--radius-md)}.\\@md\\:rounded-r-none{border-top-right-radius:0;border-bottom-right-radius:0}}@container (min-width:36rem){.\\@xl\\:block{display:block}.\\@xl\\:justify-end{justify-content:flex-end}}}@keyframes progress{50%{background-position-x:-115%}}@keyframes rating{0%,40%{filter:brightness(1.05)contrast(1.05);scale:1.1}}@keyframes skeleton{0%{background-position:150%}to{background-position:-50%}}@keyframes dropdown{0%{opacity:0}}@keyframes radio{0%{padding:5px}50%{padding:3px}}@keyframes toast{0%{opacity:0;scale:.9}to{opacity:1;scale:1}}@property --tw-translate-x{syntax:"*";inherits:false;initial-value:0}@property --tw-translate-y{syntax:"*";inherits:false;initial-value:0}@property --tw-translate-z{syntax:"*";inherits:false;initial-value:0}@property --tw-rotate-x{syntax:"*";inherits:false}@property --tw-rotate-y{syntax:"*";inherits:false}@property --tw-rotate-z{syntax:"*";inherits:false}@property --tw-skew-x{syntax:"*";inherits:false}@property --tw-skew-y{syntax:"*";inherits:false}@property --tw-border-style{syntax:"*";inherits:false;initial-value:solid}@property --tw-leading{syntax:"*";inherits:false}@property --tw-font-weight{syntax:"*";inherits:false}@property --tw-shadow{syntax:"*";inherits:false;initial-value:0 0 #0000}@property --tw-shadow-color{syntax:"*";inherits:false}@property --tw-shadow-alpha{syntax:"<percentage>";inherits:false;initial-value:100%}@property --tw-inset-shadow{syntax:"*";inherits:false;initial-value:0 0 #0000}@property --tw-inset-shadow-color{syntax:"*";inherits:false}@property --tw-inset-shadow-alpha{syntax:"<percentage>";inherits:false;initial-value:100%}@property --tw-ring-color{syntax:"*";inherits:false}@property --tw-ring-shadow{syntax:"*";inherits:false;initial-value:0 0 #0000}@property --tw-inset-ring-color{syntax:"*";inherits:false}@property --tw-inset-ring-shadow{syntax:"*";inherits:false;initial-value:0 0 #0000}@property --tw-ring-inset{syntax:"*";inherits:false}@property --tw-ring-offset-width{syntax:"<length>";inherits:false;initial-value:0}@property --tw-ring-offset-color{syntax:"*";inherits:false;initial-value:#fff}@property --tw-ring-offset-shadow{syntax:"*";inherits:false;initial-value:0 0 #0000}@property --tw-outline-style{syntax:"*";inherits:false;initial-value:solid}@property --tw-blur{syntax:"*";inherits:false}@property --tw-brightness{syntax:"*";inherits:false}@property --tw-contrast{syntax:"*";inherits:false}@property --tw-grayscale{syntax:"*";inherits:false}@property --tw-hue-rotate{syntax:"*";inherits:false}@property --tw-invert{syntax:"*";inherits:false}@property --tw-opacity{syntax:"*";inherits:false}@property --tw-saturate{syntax:"*";inherits:false}@property --tw-sepia{syntax:"*";inherits:false}@property --tw-drop-shadow{syntax:"*";inherits:false}@property --tw-drop-shadow-color{syntax:"*";inherits:false}@property --tw-drop-shadow-alpha{syntax:"<percentage>";inherits:false;initial-value:100%}@property --tw-drop-shadow-size{syntax:"*";inherits:false}@property --tw-duration{syntax:"*";inherits:false}@property --tw-scale-x{syntax:"*";inherits:false;initial-value:1}@property --tw-scale-y{syntax:"*";inherits:false;initial-value:1}@property --tw-scale-z{syntax:"*";inherits:false;initial-value:1}
|
|
2074
2074
|
`;
|
|
2075
2075
|
var __defProp$i = Object.defineProperty;
|
|
2076
2076
|
var __decorateClass$i = (decorators, target, key, kind) => {
|
|
@@ -2198,7 +2198,7 @@ function useRawMutationAnnotations() {
|
|
|
2198
2198
|
}
|
|
2199
2199
|
function useMutationAnnotationsProvider() {
|
|
2200
2200
|
const mutationAnnotations = x$1(MutationAnnotationsContext);
|
|
2201
|
-
return getMutationAnnotationsProvider(mutationAnnotations);
|
|
2201
|
+
return T$1(() => getMutationAnnotationsProvider(mutationAnnotations), [mutationAnnotations]);
|
|
2202
2202
|
}
|
|
2203
2203
|
function getMutationAnnotationsProvider(mutationAnnotations) {
|
|
2204
2204
|
return (mutation, sequenceType) => {
|
|
@@ -2874,18 +2874,24 @@ const CsvDownloadButton = ({
|
|
|
2874
2874
|
getData,
|
|
2875
2875
|
className
|
|
2876
2876
|
}) => {
|
|
2877
|
-
const
|
|
2878
|
-
|
|
2879
|
-
|
|
2880
|
-
|
|
2881
|
-
|
|
2882
|
-
|
|
2883
|
-
|
|
2884
|
-
|
|
2885
|
-
|
|
2877
|
+
const [isDownloading, setIsDownloading] = d(false);
|
|
2878
|
+
const download = async () => {
|
|
2879
|
+
setIsDownloading(true);
|
|
2880
|
+
try {
|
|
2881
|
+
const content = await getDownloadContent();
|
|
2882
|
+
const blob = new Blob([content], { type: "text/csv" });
|
|
2883
|
+
const url = URL.createObjectURL(blob);
|
|
2884
|
+
const a2 = document.createElement("a");
|
|
2885
|
+
a2.href = url;
|
|
2886
|
+
a2.download = filename;
|
|
2887
|
+
a2.click();
|
|
2888
|
+
URL.revokeObjectURL(url);
|
|
2889
|
+
} finally {
|
|
2890
|
+
setIsDownloading(false);
|
|
2891
|
+
}
|
|
2886
2892
|
};
|
|
2887
|
-
const getDownloadContent = () => {
|
|
2888
|
-
const data = getData();
|
|
2893
|
+
const getDownloadContent = async () => {
|
|
2894
|
+
const data = await getData();
|
|
2889
2895
|
const keys = getDataKeys(data);
|
|
2890
2896
|
const header = keys.join(",");
|
|
2891
2897
|
const rows = data.map((row) => keys.map((key) => row[key]).join(",")).join("\n");
|
|
@@ -2900,7 +2906,7 @@ ${rows}
|
|
|
2900
2906
|
}, /* @__PURE__ */ new Set());
|
|
2901
2907
|
return [...keysSet];
|
|
2902
2908
|
};
|
|
2903
|
-
return /* @__PURE__ */ u$1("button", { className, onClick: download, children: label });
|
|
2909
|
+
return /* @__PURE__ */ u$1("button", { className, onClick: () => void download(), disabled: isDownloading, children: isDownloading ? "Downloading..." : label });
|
|
2904
2910
|
};
|
|
2905
2911
|
const Fullscreen = () => {
|
|
2906
2912
|
const element = A$1(null);
|
|
@@ -7236,6 +7242,107 @@ __decorateClass$b([
|
|
|
7236
7242
|
NumberSequencesOverTimeComponent = __decorateClass$b([
|
|
7237
7243
|
t$3("gs-number-sequences-over-time")
|
|
7238
7244
|
], NumberSequencesOverTimeComponent);
|
|
7245
|
+
const displayMutationsSchema = z$2.array(z$2.string(), {
|
|
7246
|
+
errorMap: () => ({ message: `invalid display mutations` })
|
|
7247
|
+
});
|
|
7248
|
+
function getFilteredMutationCodes({
|
|
7249
|
+
overallMutationData,
|
|
7250
|
+
displayedSegments,
|
|
7251
|
+
displayedMutationTypes,
|
|
7252
|
+
proportionInterval,
|
|
7253
|
+
mutationFilterValue,
|
|
7254
|
+
sequenceType,
|
|
7255
|
+
annotationProvider
|
|
7256
|
+
}) {
|
|
7257
|
+
return overallMutationData.filter((entry) => {
|
|
7258
|
+
if (entry.proportion < proportionInterval.min || entry.proportion > proportionInterval.max) {
|
|
7259
|
+
return false;
|
|
7260
|
+
}
|
|
7261
|
+
if (displayedSegments.some((segment) => segment.segment === entry.mutation.segment && !segment.checked)) {
|
|
7262
|
+
return false;
|
|
7263
|
+
}
|
|
7264
|
+
if (mutationOrAnnotationDoNotMatchFilter(
|
|
7265
|
+
entry.mutation,
|
|
7266
|
+
sequenceType,
|
|
7267
|
+
mutationFilterValue,
|
|
7268
|
+
annotationProvider
|
|
7269
|
+
)) {
|
|
7270
|
+
return false;
|
|
7271
|
+
}
|
|
7272
|
+
return !displayedMutationTypes.some(
|
|
7273
|
+
(mutationType2) => mutationType2.type === entry.mutation.type && !mutationType2.checked
|
|
7274
|
+
);
|
|
7275
|
+
}).map((e2) => e2.mutation.code);
|
|
7276
|
+
}
|
|
7277
|
+
function mutationOrAnnotationDoNotMatchFilter(mutation, sequenceType, mutationFilter, annotationProvider) {
|
|
7278
|
+
return !(mutationOrAnnotationMatchesTextFilter(mutation, sequenceType, mutationFilter.textFilter, annotationProvider) && mutationMatchesAnnotationFilter(mutation, sequenceType, mutationFilter.annotationNameFilter, annotationProvider));
|
|
7279
|
+
}
|
|
7280
|
+
function mutationOrAnnotationMatchesTextFilter(mutation, sequenceType, textFilter, annotationProvider) {
|
|
7281
|
+
if (textFilter === "") {
|
|
7282
|
+
return true;
|
|
7283
|
+
}
|
|
7284
|
+
if (mutation.code.includes(textFilter)) {
|
|
7285
|
+
return true;
|
|
7286
|
+
}
|
|
7287
|
+
const mutationAnnotations = annotationProvider(mutation, sequenceType);
|
|
7288
|
+
if (mutationAnnotations === void 0 || mutationAnnotations.length === 0) {
|
|
7289
|
+
return false;
|
|
7290
|
+
}
|
|
7291
|
+
return mutationAnnotations.some(
|
|
7292
|
+
(annotation) => annotation.description.includes(textFilter) || annotation.name.includes(textFilter) || annotation.symbol.includes(textFilter)
|
|
7293
|
+
);
|
|
7294
|
+
}
|
|
7295
|
+
function mutationMatchesAnnotationFilter(mutation, sequenceType, annotationNameFilter, annotationProvider) {
|
|
7296
|
+
if (annotationNameFilter.size === 0) {
|
|
7297
|
+
return true;
|
|
7298
|
+
}
|
|
7299
|
+
const mutationAnnotations = annotationProvider(mutation, sequenceType);
|
|
7300
|
+
if (mutationAnnotations === void 0 || mutationAnnotations.length === 0) {
|
|
7301
|
+
return false;
|
|
7302
|
+
}
|
|
7303
|
+
return mutationAnnotations.some((annotation) => annotationNameFilter.has(annotation.name));
|
|
7304
|
+
}
|
|
7305
|
+
async function queryDatesInDataset(lapisFilter, lapis, granularity, lapisDateField, signal) {
|
|
7306
|
+
const { dateFrom, dateTo } = getDateRangeFromFilter(lapisFilter, lapisDateField, granularity);
|
|
7307
|
+
if (dateFrom !== null && dateTo !== null) {
|
|
7308
|
+
return generateAllInRange(dateFrom, dateTo);
|
|
7309
|
+
}
|
|
7310
|
+
const { content: availableDates } = await queryAvailableDates(
|
|
7311
|
+
lapisFilter,
|
|
7312
|
+
lapis,
|
|
7313
|
+
granularity,
|
|
7314
|
+
lapisDateField,
|
|
7315
|
+
signal
|
|
7316
|
+
);
|
|
7317
|
+
const { min, max } = getMinMaxTemporal(availableDates);
|
|
7318
|
+
return generateAllInRange(dateFrom ?? min, dateTo ?? max);
|
|
7319
|
+
}
|
|
7320
|
+
function getDateRangeFromFilter(lapisFilter, lapisDateField, granularity) {
|
|
7321
|
+
const valueFromFilter = lapisFilter[lapisDateField];
|
|
7322
|
+
if (valueFromFilter) {
|
|
7323
|
+
return {
|
|
7324
|
+
dateFrom: parseDateStringToTemporal(valueFromFilter, granularity),
|
|
7325
|
+
dateTo: parseDateStringToTemporal(valueFromFilter, granularity)
|
|
7326
|
+
};
|
|
7327
|
+
}
|
|
7328
|
+
const minFromFilter = lapisFilter[`${lapisDateField}From`];
|
|
7329
|
+
const maxFromFilter = lapisFilter[`${lapisDateField}To`];
|
|
7330
|
+
return {
|
|
7331
|
+
dateFrom: minFromFilter ? parseDateStringToTemporal(minFromFilter, granularity) : null,
|
|
7332
|
+
dateTo: maxFromFilter ? parseDateStringToTemporal(maxFromFilter, granularity) : null
|
|
7333
|
+
};
|
|
7334
|
+
}
|
|
7335
|
+
function queryAvailableDates(lapisFilter, lapis, granularity, lapisDateField, signal) {
|
|
7336
|
+
return fetchAndPrepareDates(lapisFilter, granularity, lapisDateField).evaluate(lapis, signal);
|
|
7337
|
+
}
|
|
7338
|
+
function fetchAndPrepareDates(filter, granularity, lapisDateField) {
|
|
7339
|
+
const fetchData = new FetchAggregatedOperator(filter, [lapisDateField]);
|
|
7340
|
+
const dataWithFixedDateKey = new RenameFieldOperator(fetchData, lapisDateField, "date");
|
|
7341
|
+
const mapData = new MapOperator(dataWithFixedDateKey, (data) => mapDateToGranularityRange(data, granularity));
|
|
7342
|
+
const groupByData = new GroupByAndSumOperator(mapData, "dateRange", "count");
|
|
7343
|
+
const sortData = new SortOperator(groupByData, dateRangeCompare);
|
|
7344
|
+
return new MapOperator(sortData, (data) => data.dateRange);
|
|
7345
|
+
}
|
|
7239
7346
|
class Map2dBase {
|
|
7240
7347
|
constructor(serializeFirstAxis, serializeSecondAxis, initialContent) {
|
|
7241
7348
|
this.serializeFirstAxis = serializeFirstAxis;
|
|
@@ -7386,116 +7493,6 @@ class Map2dView {
|
|
|
7386
7493
|
};
|
|
7387
7494
|
}
|
|
7388
7495
|
}
|
|
7389
|
-
const displayMutationsSchema = z$2.array(z$2.string(), {
|
|
7390
|
-
errorMap: () => ({ message: `invalid display mutations` })
|
|
7391
|
-
});
|
|
7392
|
-
function getFilteredMutationOverTimeData$1({
|
|
7393
|
-
data,
|
|
7394
|
-
overallMutationData,
|
|
7395
|
-
displayedSegments,
|
|
7396
|
-
displayedMutationTypes,
|
|
7397
|
-
proportionInterval,
|
|
7398
|
-
hideGaps,
|
|
7399
|
-
mutationFilterValue,
|
|
7400
|
-
sequenceType,
|
|
7401
|
-
annotationProvider
|
|
7402
|
-
}) {
|
|
7403
|
-
const filteredData = new Map2dView(data);
|
|
7404
|
-
const mutationsToFilterOut = overallMutationData.filter((entry) => {
|
|
7405
|
-
if (entry.proportion < proportionInterval.min || entry.proportion > proportionInterval.max) {
|
|
7406
|
-
return true;
|
|
7407
|
-
}
|
|
7408
|
-
if (displayedSegments.some((segment) => segment.segment === entry.mutation.segment && !segment.checked)) {
|
|
7409
|
-
return true;
|
|
7410
|
-
}
|
|
7411
|
-
if (mutationOrAnnotationDoNotMatchFilter(entry.mutation, sequenceType, mutationFilterValue, annotationProvider)) {
|
|
7412
|
-
return true;
|
|
7413
|
-
}
|
|
7414
|
-
return displayedMutationTypes.some(
|
|
7415
|
-
(mutationType2) => mutationType2.type === entry.mutation.type && !mutationType2.checked
|
|
7416
|
-
);
|
|
7417
|
-
});
|
|
7418
|
-
mutationsToFilterOut.forEach((entry) => {
|
|
7419
|
-
filteredData.deleteRow(entry.mutation);
|
|
7420
|
-
});
|
|
7421
|
-
if (hideGaps) {
|
|
7422
|
-
const dateRangesToFilterOut = filteredData.getSecondAxisKeys().filter((dateRange2) => {
|
|
7423
|
-
const vals = filteredData.getColumn(dateRange2);
|
|
7424
|
-
return !vals.some((v2) => ((v2 == null ? void 0 : v2.type) === "value" || (v2 == null ? void 0 : v2.type) === "valueWithCoverage") && v2.totalCount > 0);
|
|
7425
|
-
});
|
|
7426
|
-
dateRangesToFilterOut.forEach((dateRange2) => filteredData.deleteColumn(dateRange2));
|
|
7427
|
-
}
|
|
7428
|
-
return filteredData;
|
|
7429
|
-
}
|
|
7430
|
-
function mutationOrAnnotationDoNotMatchFilter(mutation, sequenceType, mutationFilter, annotationProvider) {
|
|
7431
|
-
return !(mutationOrAnnotationMatchesTextFilter(mutation, sequenceType, mutationFilter.textFilter, annotationProvider) && mutationMatchesAnnotationFilter(mutation, sequenceType, mutationFilter.annotationNameFilter, annotationProvider));
|
|
7432
|
-
}
|
|
7433
|
-
function mutationOrAnnotationMatchesTextFilter(mutation, sequenceType, textFilter, annotationProvider) {
|
|
7434
|
-
if (textFilter === "") {
|
|
7435
|
-
return true;
|
|
7436
|
-
}
|
|
7437
|
-
if (mutation.code.includes(textFilter)) {
|
|
7438
|
-
return true;
|
|
7439
|
-
}
|
|
7440
|
-
const mutationAnnotations = annotationProvider(mutation, sequenceType);
|
|
7441
|
-
if (mutationAnnotations === void 0 || mutationAnnotations.length === 0) {
|
|
7442
|
-
return false;
|
|
7443
|
-
}
|
|
7444
|
-
return mutationAnnotations.some(
|
|
7445
|
-
(annotation) => annotation.description.includes(textFilter) || annotation.name.includes(textFilter) || annotation.symbol.includes(textFilter)
|
|
7446
|
-
);
|
|
7447
|
-
}
|
|
7448
|
-
function mutationMatchesAnnotationFilter(mutation, sequenceType, annotationNameFilter, annotationProvider) {
|
|
7449
|
-
if (annotationNameFilter.size === 0) {
|
|
7450
|
-
return true;
|
|
7451
|
-
}
|
|
7452
|
-
const mutationAnnotations = annotationProvider(mutation, sequenceType);
|
|
7453
|
-
if (mutationAnnotations === void 0 || mutationAnnotations.length === 0) {
|
|
7454
|
-
return false;
|
|
7455
|
-
}
|
|
7456
|
-
return mutationAnnotations.some((annotation) => annotationNameFilter.has(annotation.name));
|
|
7457
|
-
}
|
|
7458
|
-
async function queryDatesInDataset(lapisFilter, lapis, granularity, lapisDateField, signal) {
|
|
7459
|
-
const { dateFrom, dateTo } = getDateRangeFromFilter(lapisFilter, lapisDateField, granularity);
|
|
7460
|
-
if (dateFrom !== null && dateTo !== null) {
|
|
7461
|
-
return generateAllInRange(dateFrom, dateTo);
|
|
7462
|
-
}
|
|
7463
|
-
const { content: availableDates } = await queryAvailableDates(
|
|
7464
|
-
lapisFilter,
|
|
7465
|
-
lapis,
|
|
7466
|
-
granularity,
|
|
7467
|
-
lapisDateField,
|
|
7468
|
-
signal
|
|
7469
|
-
);
|
|
7470
|
-
const { min, max } = getMinMaxTemporal(availableDates);
|
|
7471
|
-
return generateAllInRange(dateFrom ?? min, dateTo ?? max);
|
|
7472
|
-
}
|
|
7473
|
-
function getDateRangeFromFilter(lapisFilter, lapisDateField, granularity) {
|
|
7474
|
-
const valueFromFilter = lapisFilter[lapisDateField];
|
|
7475
|
-
if (valueFromFilter) {
|
|
7476
|
-
return {
|
|
7477
|
-
dateFrom: parseDateStringToTemporal(valueFromFilter, granularity),
|
|
7478
|
-
dateTo: parseDateStringToTemporal(valueFromFilter, granularity)
|
|
7479
|
-
};
|
|
7480
|
-
}
|
|
7481
|
-
const minFromFilter = lapisFilter[`${lapisDateField}From`];
|
|
7482
|
-
const maxFromFilter = lapisFilter[`${lapisDateField}To`];
|
|
7483
|
-
return {
|
|
7484
|
-
dateFrom: minFromFilter ? parseDateStringToTemporal(minFromFilter, granularity) : null,
|
|
7485
|
-
dateTo: maxFromFilter ? parseDateStringToTemporal(maxFromFilter, granularity) : null
|
|
7486
|
-
};
|
|
7487
|
-
}
|
|
7488
|
-
function queryAvailableDates(lapisFilter, lapis, granularity, lapisDateField, signal) {
|
|
7489
|
-
return fetchAndPrepareDates(lapisFilter, granularity, lapisDateField).evaluate(lapis, signal);
|
|
7490
|
-
}
|
|
7491
|
-
function fetchAndPrepareDates(filter, granularity, lapisDateField) {
|
|
7492
|
-
const fetchData = new FetchAggregatedOperator(filter, [lapisDateField]);
|
|
7493
|
-
const dataWithFixedDateKey = new RenameFieldOperator(fetchData, lapisDateField, "date");
|
|
7494
|
-
const mapData = new MapOperator(dataWithFixedDateKey, (data) => mapDateToGranularityRange(data, granularity));
|
|
7495
|
-
const groupByData = new GroupByAndSumOperator(mapData, "dateRange", "count");
|
|
7496
|
-
const sortData = new SortOperator(groupByData, dateRangeCompare);
|
|
7497
|
-
return new MapOperator(sortData, (data) => data.dateRange);
|
|
7498
|
-
}
|
|
7499
7496
|
class BaseMutationOverTimeDataMap extends Map2dBase {
|
|
7500
7497
|
constructor(initialContent) {
|
|
7501
7498
|
super(serializeSubstitutionOrDeletion, serializeTemporal$1, initialContent);
|
|
@@ -7540,12 +7537,11 @@ async function queryOverallMutationData({
|
|
|
7540
7537
|
lapisFilter,
|
|
7541
7538
|
sequenceType,
|
|
7542
7539
|
lapis,
|
|
7543
|
-
granularity,
|
|
7544
7540
|
lapisDateField,
|
|
7545
7541
|
includeMutations,
|
|
7542
|
+
requestedDateRanges,
|
|
7546
7543
|
signal
|
|
7547
7544
|
}) {
|
|
7548
|
-
const requestedDateRanges = await queryDatesInDataset(lapisFilter, lapis, granularity, lapisDateField, signal);
|
|
7549
7545
|
if (requestedDateRanges.length === 0) {
|
|
7550
7546
|
if (includeMutations) {
|
|
7551
7547
|
return {
|
|
@@ -7575,7 +7571,7 @@ async function queryOverallMutationData({
|
|
|
7575
7571
|
}
|
|
7576
7572
|
return dataPromise;
|
|
7577
7573
|
}
|
|
7578
|
-
async function
|
|
7574
|
+
async function queryMutationsOverTimeMetadata(lapisFilter, sequenceType, lapis, lapisDateField, granularity, displayMutations, signal) {
|
|
7579
7575
|
const requestedDateRanges = await queryDatesInDataset(lapisFilter, lapis, granularity, lapisDateField, signal);
|
|
7580
7576
|
if (requestedDateRanges.length > MAX_NUMBER_OF_GRID_COLUMNS$1) {
|
|
7581
7577
|
throw new UserFacingError(
|
|
@@ -7589,10 +7585,20 @@ async function queryMutationsOverTimeData(lapisFilter, sequenceType, lapis, lapi
|
|
|
7589
7585
|
lapis,
|
|
7590
7586
|
lapisDateField,
|
|
7591
7587
|
includeMutations: displayMutations,
|
|
7592
|
-
|
|
7588
|
+
requestedDateRanges,
|
|
7589
|
+
signal
|
|
7593
7590
|
}).then((r2) => r2.content);
|
|
7594
7591
|
overallMutationData.sort((a2, b2) => sortSubstitutionsAndDeletions(a2.mutation, b2.mutation));
|
|
7595
|
-
|
|
7592
|
+
return { overallMutationData, requestedDateRanges };
|
|
7593
|
+
}
|
|
7594
|
+
async function queryMutationsOverTimePage(lapisFilter, lapis, lapisDateField, sequenceType, requestedDateRanges, includeMutationCodes, signal) {
|
|
7595
|
+
if (includeMutationCodes.length === 0 || requestedDateRanges.length === 0) {
|
|
7596
|
+
return new BaseMutationOverTimeDataMap({
|
|
7597
|
+
keysFirstAxis: /* @__PURE__ */ new Map(),
|
|
7598
|
+
keysSecondAxis: new Map(requestedDateRanges.map((date) => [date.dateString, date])),
|
|
7599
|
+
data: /* @__PURE__ */ new Map()
|
|
7600
|
+
});
|
|
7601
|
+
}
|
|
7596
7602
|
const apiResult = await fetchMutationsOverTime(
|
|
7597
7603
|
lapis,
|
|
7598
7604
|
{
|
|
@@ -7601,33 +7607,17 @@ async function queryMutationsOverTimeData(lapisFilter, sequenceType, lapis, lapi
|
|
|
7601
7607
|
dateFrom: date.firstDay.toString(),
|
|
7602
7608
|
dateTo: date.lastDay.toString()
|
|
7603
7609
|
})),
|
|
7604
|
-
includeMutations,
|
|
7610
|
+
includeMutations: includeMutationCodes,
|
|
7605
7611
|
dateField: lapisDateField
|
|
7606
7612
|
},
|
|
7607
7613
|
sequenceType,
|
|
7608
7614
|
signal
|
|
7609
7615
|
);
|
|
7616
|
+
return buildMutationOverTimeDataMap(apiResult, requestedDateRanges);
|
|
7617
|
+
}
|
|
7618
|
+
function buildMutationOverTimeDataMap(apiResult, requestedDateRanges) {
|
|
7610
7619
|
const totalCounts = apiResult.data.totalCountsByDateRange;
|
|
7611
7620
|
const responseMutations = apiResult.data.mutations.map(parseMutationCode);
|
|
7612
|
-
const mutationEntries = responseMutations.map((mutation, i2) => {
|
|
7613
|
-
const numbers = {
|
|
7614
|
-
count: overallMutationData[i2].count,
|
|
7615
|
-
proportion: overallMutationData[i2].proportion
|
|
7616
|
-
};
|
|
7617
|
-
if (mutation.type === "deletion") {
|
|
7618
|
-
return {
|
|
7619
|
-
type: "deletion",
|
|
7620
|
-
mutation,
|
|
7621
|
-
...numbers
|
|
7622
|
-
};
|
|
7623
|
-
} else {
|
|
7624
|
-
return {
|
|
7625
|
-
type: "substitution",
|
|
7626
|
-
mutation,
|
|
7627
|
-
...numbers
|
|
7628
|
-
};
|
|
7629
|
-
}
|
|
7630
|
-
});
|
|
7631
7621
|
const mutationOverTimeData = {
|
|
7632
7622
|
keysFirstAxis: new Map(responseMutations.map((mutation) => [mutation.code, mutation])),
|
|
7633
7623
|
keysSecondAxis: new Map(requestedDateRanges.map((date) => [date.dateString, date])),
|
|
@@ -7665,10 +7655,7 @@ async function queryMutationsOverTimeData(lapisFilter, sequenceType, lapis, lapi
|
|
|
7665
7655
|
])
|
|
7666
7656
|
)
|
|
7667
7657
|
};
|
|
7668
|
-
return
|
|
7669
|
-
mutationOverTimeData: new BaseMutationOverTimeDataMap(mutationOverTimeData),
|
|
7670
|
-
overallMutationData: mutationEntries
|
|
7671
|
-
};
|
|
7658
|
+
return new BaseMutationOverTimeDataMap(mutationOverTimeData);
|
|
7672
7659
|
}
|
|
7673
7660
|
function parseMutationCode(code) {
|
|
7674
7661
|
const maybeDeletion = DeletionClass.parse(code);
|
|
@@ -7943,6 +7930,13 @@ function calculateTooltipPosition(triggerRect, tooltipRect, position) {
|
|
|
7943
7930
|
}
|
|
7944
7931
|
return { top, left };
|
|
7945
7932
|
}
|
|
7933
|
+
function useControlledState(initialState) {
|
|
7934
|
+
const [state, setState] = d(initialState);
|
|
7935
|
+
y2(() => {
|
|
7936
|
+
setState(initialState);
|
|
7937
|
+
}, [initialState]);
|
|
7938
|
+
return [state, setState];
|
|
7939
|
+
}
|
|
7946
7940
|
const pageSizeContext = createContext$1({
|
|
7947
7941
|
pageSize: -1,
|
|
7948
7942
|
setPageSize: () => {
|
|
@@ -7953,34 +7947,36 @@ function usePageSizeContext() {
|
|
|
7953
7947
|
return x$1(pageSizeContext);
|
|
7954
7948
|
}
|
|
7955
7949
|
const PageSizeContextProvider = ({ children, pageSizes }) => {
|
|
7956
|
-
const [pageSize, setPageSize] =
|
|
7950
|
+
const [pageSize, setPageSize] = useControlledState(
|
|
7951
|
+
typeof pageSizes === "number" ? pageSizes : pageSizes.at(0) ?? 10
|
|
7952
|
+
);
|
|
7957
7953
|
return /* @__PURE__ */ u$1(pageSizeContext.Provider, { value: { pageSize, setPageSize }, children });
|
|
7958
7954
|
};
|
|
7959
7955
|
const pageSizesSchema = z$2.union([z$2.array(z$2.number()), z$2.number()]);
|
|
7960
7956
|
function Pagination({
|
|
7961
7957
|
table,
|
|
7962
|
-
pageSizes
|
|
7958
|
+
pageSizes,
|
|
7959
|
+
totalRows
|
|
7963
7960
|
}) {
|
|
7964
7961
|
return /* @__PURE__ */ u$1("div", { className: "@container", children: /* @__PURE__ */ u$1("div", { className: "flex items-center gap-x-6 gap-y-2 flex-wrap @xl:justify-end justify-center", children: [
|
|
7965
7962
|
/* @__PURE__ */ u$1(PageSizeSelector, { table, pageSizes }),
|
|
7966
|
-
/* @__PURE__ */ u$1(PageIndicator, { table }),
|
|
7967
|
-
/* @__PURE__ */ u$1("div", { className: "@xl:block hidden", children: /* @__PURE__ */ u$1(GotoPageSelector, { table }) }),
|
|
7963
|
+
/* @__PURE__ */ u$1(PageIndicator, { table, totalRows }),
|
|
7964
|
+
/* @__PURE__ */ u$1("div", { className: "@xl:block hidden", children: /* @__PURE__ */ u$1(GotoPageSelector, { table, totalRows }) }),
|
|
7968
7965
|
/* @__PURE__ */ u$1(SelectPageButtons, { table })
|
|
7969
7966
|
] }) });
|
|
7970
7967
|
}
|
|
7971
|
-
function PageIndicator({ table }) {
|
|
7972
|
-
if (table.
|
|
7968
|
+
function PageIndicator({ table, totalRows }) {
|
|
7969
|
+
if (table.getPaginationRowModel().rows.length <= 1 && totalRows <= 1) {
|
|
7973
7970
|
return null;
|
|
7974
7971
|
}
|
|
7975
7972
|
const minRow = table.getState().pagination.pageIndex * table.getState().pagination.pageSize + 1;
|
|
7976
|
-
const maxRow = minRow + table.
|
|
7977
|
-
const numRows = table.getCoreRowModel().rows.length;
|
|
7973
|
+
const maxRow = minRow + table.getPaginationRowModel().rows.length - 1;
|
|
7978
7974
|
return /* @__PURE__ */ u$1("span", { className: "text-sm", children: [
|
|
7979
7975
|
minRow,
|
|
7980
7976
|
" - ",
|
|
7981
7977
|
maxRow,
|
|
7982
7978
|
" of ",
|
|
7983
|
-
|
|
7979
|
+
totalRows
|
|
7984
7980
|
] });
|
|
7985
7981
|
}
|
|
7986
7982
|
const heightForSmallerLines = "h-[calc(var(--size)*0.7)]";
|
|
@@ -8015,8 +8011,8 @@ function PageSizeSelector({
|
|
|
8015
8011
|
)
|
|
8016
8012
|
] });
|
|
8017
8013
|
}
|
|
8018
|
-
function GotoPageSelector({ table }) {
|
|
8019
|
-
if (table.getRowModel().rows.length === 0) {
|
|
8014
|
+
function GotoPageSelector({ table, totalRows }) {
|
|
8015
|
+
if (table.getRowModel().rows.length === 0 && totalRows === 0) {
|
|
8020
8016
|
return null;
|
|
8021
8017
|
}
|
|
8022
8018
|
return /* @__PURE__ */ u$1("label", { className: "items-center flex", children: [
|
|
@@ -8086,6 +8082,7 @@ function flexRender(Comp, props) {
|
|
|
8086
8082
|
return !Comp ? null : typeof Comp === "function" ? /* @__PURE__ */ u$1(Comp, { ...props }) : Comp;
|
|
8087
8083
|
}
|
|
8088
8084
|
function usePreactTable(options2) {
|
|
8085
|
+
var _a;
|
|
8089
8086
|
const resolvedOptions = {
|
|
8090
8087
|
state: {},
|
|
8091
8088
|
onStateChange: () => {
|
|
@@ -8105,17 +8102,20 @@ function usePreactTable(options2) {
|
|
|
8105
8102
|
...options2.state
|
|
8106
8103
|
},
|
|
8107
8104
|
onStateChange: (updater) => {
|
|
8108
|
-
var
|
|
8105
|
+
var _a2;
|
|
8109
8106
|
setState(updater);
|
|
8110
|
-
(
|
|
8107
|
+
(_a2 = options2.onStateChange) == null ? void 0 : _a2.call(options2, updater);
|
|
8111
8108
|
}
|
|
8112
8109
|
}));
|
|
8110
|
+
const isControlled = options2.manualPagination === true && ((_a = options2.state) == null ? void 0 : _a.pagination) !== void 0;
|
|
8113
8111
|
const { pageSize } = usePageSizeContext();
|
|
8114
8112
|
y2(
|
|
8115
8113
|
() => {
|
|
8116
|
-
|
|
8114
|
+
if (!isControlled) {
|
|
8115
|
+
tableRef.current.setPageSize(pageSize);
|
|
8116
|
+
}
|
|
8117
8117
|
},
|
|
8118
|
-
[pageSize]
|
|
8118
|
+
[pageSize, isControlled]
|
|
8119
8119
|
// eslint-disable-line react-hooks/exhaustive-deps -- only run this when the pageSize changes
|
|
8120
8120
|
);
|
|
8121
8121
|
return tableRef.current;
|
|
@@ -8135,17 +8135,86 @@ function FeaturesOverTimeGrid({
|
|
|
8135
8135
|
featureRenderer,
|
|
8136
8136
|
tooltipPortalTarget
|
|
8137
8137
|
}) {
|
|
8138
|
-
const tableData =
|
|
8139
|
-
|
|
8140
|
-
|
|
8141
|
-
|
|
8142
|
-
|
|
8143
|
-
|
|
8144
|
-
|
|
8145
|
-
|
|
8146
|
-
|
|
8138
|
+
const tableData = useGridTableData(data, customColumns, featureRenderer);
|
|
8139
|
+
const columns = useGridColumns(
|
|
8140
|
+
data.getSecondAxisKeys(),
|
|
8141
|
+
rowLabelHeader,
|
|
8142
|
+
customColumns,
|
|
8143
|
+
colorScale,
|
|
8144
|
+
tooltipPortalTarget,
|
|
8145
|
+
featureRenderer
|
|
8146
|
+
);
|
|
8147
|
+
const { pageSize } = usePageSizeContext();
|
|
8148
|
+
const table = usePreactTable({
|
|
8149
|
+
data: tableData,
|
|
8150
|
+
columns,
|
|
8151
|
+
getCoreRowModel: getCoreRowModel(),
|
|
8152
|
+
getPaginationRowModel: getPaginationRowModel(),
|
|
8153
|
+
initialState: {
|
|
8154
|
+
pagination: { pageIndex: 0, pageSize }
|
|
8155
|
+
}
|
|
8156
|
+
});
|
|
8157
|
+
return /* @__PURE__ */ u$1(FeaturesOverTimeGridDisplay, { table, pageSizes });
|
|
8158
|
+
}
|
|
8159
|
+
function FeaturesOverTimeGridServerPaginated({
|
|
8160
|
+
rowLabelHeader,
|
|
8161
|
+
data,
|
|
8162
|
+
isLoading,
|
|
8163
|
+
loadingRowLabels,
|
|
8164
|
+
requestedDateRanges,
|
|
8165
|
+
colorScale,
|
|
8166
|
+
pageSizes,
|
|
8167
|
+
pageIndex,
|
|
8168
|
+
totalRows,
|
|
8169
|
+
onPageChange,
|
|
8170
|
+
customColumns = EMPTY_COLUMNS,
|
|
8171
|
+
featureRenderer,
|
|
8172
|
+
tooltipPortalTarget
|
|
8173
|
+
}) {
|
|
8174
|
+
const tableData = useGridTableData(data, customColumns, featureRenderer);
|
|
8175
|
+
const columns = useGridColumns(
|
|
8176
|
+
(data == null ? void 0 : data.getSecondAxisKeys()) ?? requestedDateRanges,
|
|
8177
|
+
rowLabelHeader,
|
|
8178
|
+
customColumns,
|
|
8179
|
+
colorScale,
|
|
8180
|
+
tooltipPortalTarget,
|
|
8181
|
+
featureRenderer
|
|
8182
|
+
);
|
|
8183
|
+
const { pageSize, setPageSize } = usePageSizeContext();
|
|
8184
|
+
const table = usePreactTable({
|
|
8185
|
+
data: tableData,
|
|
8186
|
+
columns,
|
|
8187
|
+
getCoreRowModel: getCoreRowModel(),
|
|
8188
|
+
// getPaginationRowModel not needed with manualPagination: true
|
|
8189
|
+
manualPagination: true,
|
|
8190
|
+
pageCount: Math.ceil(totalRows / pageSize),
|
|
8191
|
+
state: {
|
|
8192
|
+
pagination: { pageIndex, pageSize }
|
|
8193
|
+
},
|
|
8194
|
+
onPaginationChange: (updater) => {
|
|
8195
|
+
const current = { pageIndex, pageSize };
|
|
8196
|
+
const next = typeof updater === "function" ? updater(current) : updater;
|
|
8197
|
+
if (next.pageIndex !== current.pageIndex) {
|
|
8198
|
+
onPageChange(next.pageIndex);
|
|
8199
|
+
}
|
|
8200
|
+
if (next.pageSize !== current.pageSize) {
|
|
8201
|
+
setPageSize(next.pageSize);
|
|
8202
|
+
}
|
|
8203
|
+
}
|
|
8204
|
+
});
|
|
8205
|
+
return /* @__PURE__ */ u$1(
|
|
8206
|
+
FeaturesOverTimeGridDisplay,
|
|
8207
|
+
{
|
|
8208
|
+
table,
|
|
8209
|
+
pageSizes,
|
|
8210
|
+
loadingState: { isLoading, loadingRowLabels },
|
|
8211
|
+
totalRows
|
|
8212
|
+
}
|
|
8213
|
+
);
|
|
8214
|
+
}
|
|
8215
|
+
function useGridColumns(dates, rowLabelHeader, customColumns, colorScale, tooltipPortalTarget, featureRenderer) {
|
|
8216
|
+
return T$1(() => {
|
|
8147
8217
|
const columnHelper = createColumnHelper();
|
|
8148
|
-
const dates = data.getSecondAxisKeys();
|
|
8149
8218
|
const featureHeader = columnHelper.accessor((row) => row.feature, {
|
|
8150
8219
|
id: "feature",
|
|
8151
8220
|
header: () => /* @__PURE__ */ u$1("span", { children: rowLabelHeader }),
|
|
@@ -8165,13 +8234,13 @@ function FeaturesOverTimeGrid({
|
|
|
8165
8234
|
return columnHelper.accessor((row) => row.values[index], {
|
|
8166
8235
|
id: `date-${index}`,
|
|
8167
8236
|
header: () => /* @__PURE__ */ u$1("div", { className: "@container min-w-[0.05rem]", children: /* @__PURE__ */ u$1("p", { ...styleGridHeader(index, dates.length), children: date.dateString }) }),
|
|
8168
|
-
cell: ({ getValue, row, column, table
|
|
8237
|
+
cell: ({ getValue, row, column, table }) => {
|
|
8169
8238
|
const valueRaw = getValue();
|
|
8170
8239
|
const value = valueRaw ?? null;
|
|
8171
8240
|
const rowIndex = row.index;
|
|
8172
8241
|
const columnIndex = column.getIndex();
|
|
8173
|
-
const numberOfRows =
|
|
8174
|
-
const numberOfColumns =
|
|
8242
|
+
const numberOfRows = table.getRowModel().rows.length;
|
|
8243
|
+
const numberOfColumns = table.getAllColumns().length;
|
|
8175
8244
|
if (valueRaw === void 0) {
|
|
8176
8245
|
console.error(
|
|
8177
8246
|
`Found undefined value for ${row.original.feature} - ${date.dateString}. This shouldn't happen.`
|
|
@@ -8184,7 +8253,7 @@ function FeaturesOverTimeGrid({
|
|
|
8184
8253
|
value: value ?? null,
|
|
8185
8254
|
tooltip: tooltip2,
|
|
8186
8255
|
tooltipPosition: getTooltipPosition(
|
|
8187
|
-
rowIndex -
|
|
8256
|
+
rowIndex - table.getState().pagination.pageIndex * table.getState().pagination.pageSize,
|
|
8188
8257
|
numberOfRows,
|
|
8189
8258
|
columnIndex,
|
|
8190
8259
|
numberOfColumns
|
|
@@ -8197,29 +8266,48 @@ function FeaturesOverTimeGrid({
|
|
|
8197
8266
|
});
|
|
8198
8267
|
});
|
|
8199
8268
|
return [featureHeader, ...customColumnHeaders, ...dateHeaders];
|
|
8200
|
-
}, [colorScale,
|
|
8201
|
-
|
|
8202
|
-
|
|
8203
|
-
|
|
8204
|
-
|
|
8205
|
-
|
|
8206
|
-
getPaginationRowModel: getPaginationRowModel(),
|
|
8207
|
-
initialState: {
|
|
8208
|
-
pagination: {
|
|
8209
|
-
pageIndex: 0,
|
|
8210
|
-
pageSize
|
|
8211
|
-
}
|
|
8269
|
+
}, [colorScale, dates, customColumns, tooltipPortalTarget, featureRenderer, rowLabelHeader]);
|
|
8270
|
+
}
|
|
8271
|
+
function useGridTableData(data, customColumns, featureRenderer) {
|
|
8272
|
+
return T$1(() => {
|
|
8273
|
+
if (!data) {
|
|
8274
|
+
return [];
|
|
8212
8275
|
}
|
|
8213
|
-
|
|
8276
|
+
const firstAxisKeys = data.getFirstAxisKeys();
|
|
8277
|
+
return data.getAsArray().map((row, index) => {
|
|
8278
|
+
const firstAxisKey = firstAxisKeys[index];
|
|
8279
|
+
const customValues = customColumns.map((col) => col.values[featureRenderer.asString(firstAxisKey)]);
|
|
8280
|
+
return { feature: firstAxisKey, values: [...row], customValues };
|
|
8281
|
+
});
|
|
8282
|
+
}, [data, customColumns, featureRenderer]);
|
|
8283
|
+
}
|
|
8284
|
+
function FeaturesOverTimeGridDisplay({
|
|
8285
|
+
table,
|
|
8286
|
+
pageSizes,
|
|
8287
|
+
loadingState,
|
|
8288
|
+
totalRows
|
|
8289
|
+
}) {
|
|
8290
|
+
const displayedTotalRows = totalRows ?? table.getCoreRowModel().rows.length;
|
|
8214
8291
|
return /* @__PURE__ */ u$1("div", { className: "w-full", children: [
|
|
8215
8292
|
/* @__PURE__ */ u$1("table", { className: "w-full", children: [
|
|
8216
8293
|
/* @__PURE__ */ u$1("thead", { children: table.getHeaderGroups().map((headerGroup) => /* @__PURE__ */ u$1("tr", { children: headerGroup.headers.map((header) => /* @__PURE__ */ u$1("th", { colSpan: header.colSpan, style: { width: `${header.getSize()}px` }, children: header.isPlaceholder ? null : flexRender(header.column.columnDef.header, header.getContext()) }, header.id)) }, headerGroup.id)) }),
|
|
8217
|
-
/* @__PURE__ */ u$1("tbody", { children: [
|
|
8294
|
+
/* @__PURE__ */ u$1("tbody", { children: (loadingState == null ? void 0 : loadingState.isLoading) ? loadingState.loadingRowLabels.map((label, rowIndex) => /* @__PURE__ */ u$1("tr", { children: [
|
|
8295
|
+
/* @__PURE__ */ u$1("td", { className: "text-center", children: label }),
|
|
8296
|
+
rowIndex === 0 && /* @__PURE__ */ u$1(
|
|
8297
|
+
"td",
|
|
8298
|
+
{
|
|
8299
|
+
rowSpan: loadingState.loadingRowLabels.length,
|
|
8300
|
+
colSpan: table.getFlatHeaders().length - 1,
|
|
8301
|
+
className: "text-center",
|
|
8302
|
+
children: /* @__PURE__ */ u$1("span", { className: "loading loading-spinner loading-sm" })
|
|
8303
|
+
}
|
|
8304
|
+
)
|
|
8305
|
+
] }, label)) : /* @__PURE__ */ u$1(Fragment, { children: [
|
|
8218
8306
|
table.getRowModel().rows.map((row) => /* @__PURE__ */ u$1("tr", { children: row.getVisibleCells().map((cell) => /* @__PURE__ */ u$1("td", { children: flexRender(cell.column.columnDef.cell, cell.getContext()) }, cell.id)) }, row.id)),
|
|
8219
|
-
table.getRowModel().rows.length === 0 && /* @__PURE__ */ u$1("td", { colSpan: table.getFlatHeaders().length, children: /* @__PURE__ */ u$1("div", { className: "text-center", children: "No data available for your filters." }) })
|
|
8220
|
-
] })
|
|
8307
|
+
table.getRowModel().rows.length === 0 && /* @__PURE__ */ u$1("tr", { children: /* @__PURE__ */ u$1("td", { colSpan: table.getFlatHeaders().length, children: /* @__PURE__ */ u$1("div", { className: "text-center", children: "No data available for your filters." }) }) })
|
|
8308
|
+
] }) })
|
|
8221
8309
|
] }),
|
|
8222
|
-
/* @__PURE__ */ u$1("div", { className: "mt-2", children: /* @__PURE__ */ u$1(Pagination, { table, pageSizes }) })
|
|
8310
|
+
/* @__PURE__ */ u$1("div", { className: "mt-2", children: /* @__PURE__ */ u$1(Pagination, { table, pageSizes, totalRows: displayedTotalRows }) })
|
|
8223
8311
|
] });
|
|
8224
8312
|
}
|
|
8225
8313
|
function styleGridHeader(columnIndex, numDateColumns) {
|
|
@@ -8347,6 +8435,64 @@ const AnnotationCheckboxes = ({ value, setFilterValue }) => {
|
|
|
8347
8435
|
] })
|
|
8348
8436
|
] });
|
|
8349
8437
|
};
|
|
8438
|
+
function useMutationsOverTimePageData(filteredMutationCodes, pageIndex, pageSize, lapisFilter, lapis, lapisDateField, sequenceType, requestedDateRanges, hideGaps) {
|
|
8439
|
+
const pageMutationCodes = T$1(
|
|
8440
|
+
() => filteredMutationCodes.slice(pageIndex * pageSize, (pageIndex + 1) * pageSize),
|
|
8441
|
+
[filteredMutationCodes, pageIndex, pageSize]
|
|
8442
|
+
);
|
|
8443
|
+
const cache = A$1(/* @__PURE__ */ new Map());
|
|
8444
|
+
y2(() => {
|
|
8445
|
+
cache.current = /* @__PURE__ */ new Map();
|
|
8446
|
+
}, [lapisFilter, lapis, lapisDateField, sequenceType, requestedDateRanges]);
|
|
8447
|
+
const {
|
|
8448
|
+
data: pageData,
|
|
8449
|
+
error,
|
|
8450
|
+
isLoading
|
|
8451
|
+
} = useQuery(async () => {
|
|
8452
|
+
const cacheKey = JSON.stringify({
|
|
8453
|
+
lapisFilter,
|
|
8454
|
+
lapis,
|
|
8455
|
+
lapisDateField,
|
|
8456
|
+
sequenceType,
|
|
8457
|
+
requestedDateRanges,
|
|
8458
|
+
pageMutationCodes
|
|
8459
|
+
});
|
|
8460
|
+
const cachedData = cache.current.get(cacheKey);
|
|
8461
|
+
if (cachedData !== void 0) {
|
|
8462
|
+
return cachedData;
|
|
8463
|
+
}
|
|
8464
|
+
const newData = await queryMutationsOverTimePage(
|
|
8465
|
+
lapisFilter,
|
|
8466
|
+
lapis,
|
|
8467
|
+
lapisDateField,
|
|
8468
|
+
sequenceType,
|
|
8469
|
+
requestedDateRanges,
|
|
8470
|
+
pageMutationCodes
|
|
8471
|
+
);
|
|
8472
|
+
cache.current.set(cacheKey, newData);
|
|
8473
|
+
return newData;
|
|
8474
|
+
}, [lapisFilter, lapis, lapisDateField, sequenceType, requestedDateRanges, pageMutationCodes]);
|
|
8475
|
+
if (error) {
|
|
8476
|
+
throw error;
|
|
8477
|
+
}
|
|
8478
|
+
return T$1(() => {
|
|
8479
|
+
if (isLoading) {
|
|
8480
|
+
return { isLoading: true, data: null, pageMutationCodes };
|
|
8481
|
+
}
|
|
8482
|
+
return { isLoading: false, data: handleHideGaps(pageData, hideGaps), pageMutationCodes };
|
|
8483
|
+
}, [pageData, hideGaps, isLoading, pageMutationCodes]);
|
|
8484
|
+
}
|
|
8485
|
+
function handleHideGaps(data, hideGaps) {
|
|
8486
|
+
if (!hideGaps) {
|
|
8487
|
+
return data;
|
|
8488
|
+
}
|
|
8489
|
+
const view = new Map2dView(data);
|
|
8490
|
+
view.getSecondAxisKeys().filter((dateRange2) => {
|
|
8491
|
+
const vals = view.getColumn(dateRange2);
|
|
8492
|
+
return !vals.some((v2) => ((v2 == null ? void 0 : v2.type) === "value" || (v2 == null ? void 0 : v2.type) === "valueWithCoverage") && v2.totalCount > 0);
|
|
8493
|
+
}).forEach((dateRange2) => view.deleteColumn(dateRange2));
|
|
8494
|
+
return view;
|
|
8495
|
+
}
|
|
8350
8496
|
const mutationsOverTimeViewSchema = z$2.literal(views.grid);
|
|
8351
8497
|
const meanProportionIntervalSchema$1 = z$2.object({
|
|
8352
8498
|
min: z$2.number().min(0).max(1),
|
|
@@ -8373,35 +8519,52 @@ const MutationsOverTime = (componentProps) => {
|
|
|
8373
8519
|
};
|
|
8374
8520
|
const MutationsOverTimeInner = ({ ...componentProps }) => {
|
|
8375
8521
|
const lapis = useLapisUrl();
|
|
8376
|
-
const { lapisFilter, sequenceType, granularity, lapisDateField, displayMutations } = componentProps;
|
|
8377
|
-
const
|
|
8378
|
-
|
|
8379
|
-
|
|
8380
|
-
|
|
8381
|
-
|
|
8522
|
+
const { lapisFilter, sequenceType, granularity, lapisDateField, displayMutations, pageSizes } = componentProps;
|
|
8523
|
+
const [pageIndex, setPageIndex] = d(0);
|
|
8524
|
+
const {
|
|
8525
|
+
data: metadata,
|
|
8526
|
+
error: metadataError,
|
|
8527
|
+
isLoading: metadataLoading
|
|
8528
|
+
} = useQuery(() => {
|
|
8529
|
+
setPageIndex(0);
|
|
8530
|
+
return queryMutationsOverTimeMetadata(
|
|
8531
|
+
lapisFilter,
|
|
8532
|
+
sequenceType,
|
|
8533
|
+
lapis,
|
|
8534
|
+
lapisDateField,
|
|
8535
|
+
granularity,
|
|
8536
|
+
displayMutations
|
|
8537
|
+
);
|
|
8538
|
+
}, [granularity, lapis, lapisDateField, lapisFilter, sequenceType, displayMutations]);
|
|
8539
|
+
if (metadataLoading) {
|
|
8382
8540
|
return /* @__PURE__ */ u$1(LoadingDisplay, {});
|
|
8383
8541
|
}
|
|
8384
|
-
if (
|
|
8385
|
-
throw
|
|
8542
|
+
if (metadataError) {
|
|
8543
|
+
throw metadataError;
|
|
8386
8544
|
}
|
|
8387
|
-
if (
|
|
8545
|
+
if (metadata.overallMutationData.length === 0) {
|
|
8388
8546
|
return /* @__PURE__ */ u$1(NoDataDisplay, {});
|
|
8389
8547
|
}
|
|
8390
|
-
|
|
8391
|
-
return /* @__PURE__ */ u$1(
|
|
8548
|
+
return /* @__PURE__ */ u$1(PageSizeContextProvider, { pageSizes, children: /* @__PURE__ */ u$1(
|
|
8392
8549
|
MutationsOverTimeTabs$1,
|
|
8393
8550
|
{
|
|
8394
|
-
|
|
8395
|
-
|
|
8396
|
-
|
|
8551
|
+
metadata,
|
|
8552
|
+
originalComponentProps: componentProps,
|
|
8553
|
+
pageIndex,
|
|
8554
|
+
setPageIndex
|
|
8397
8555
|
}
|
|
8398
|
-
);
|
|
8556
|
+
) });
|
|
8399
8557
|
};
|
|
8400
8558
|
const MutationsOverTimeTabs$1 = ({
|
|
8401
|
-
|
|
8559
|
+
metadata,
|
|
8402
8560
|
originalComponentProps,
|
|
8403
|
-
|
|
8561
|
+
pageIndex,
|
|
8562
|
+
setPageIndex
|
|
8404
8563
|
}) => {
|
|
8564
|
+
const lapis = useLapisUrl();
|
|
8565
|
+
const { lapisFilter, sequenceType, lapisDateField } = originalComponentProps;
|
|
8566
|
+
const { overallMutationData, requestedDateRanges } = metadata;
|
|
8567
|
+
const { pageSize } = usePageSizeContext();
|
|
8405
8568
|
const tabsRef = useDispatchFinishedLoadingEvent();
|
|
8406
8569
|
const tooltipPortalTargetRef = A$1(null);
|
|
8407
8570
|
const [tooltipPortalTarget, setTooltipPortalTarget] = d(null);
|
|
@@ -8422,34 +8585,53 @@ const MutationsOverTimeTabs$1 = ({
|
|
|
8422
8585
|
]);
|
|
8423
8586
|
const [hideGaps, setHideGaps] = d(originalComponentProps.hideGaps ?? false);
|
|
8424
8587
|
y2(() => setHideGaps(originalComponentProps.hideGaps ?? false), [originalComponentProps.hideGaps]);
|
|
8425
|
-
const
|
|
8426
|
-
|
|
8427
|
-
data: mutationOverTimeData,
|
|
8588
|
+
const filteredMutationCodes = T$1(
|
|
8589
|
+
() => getFilteredMutationCodes({
|
|
8428
8590
|
overallMutationData,
|
|
8429
8591
|
displayedSegments,
|
|
8430
8592
|
displayedMutationTypes,
|
|
8431
8593
|
proportionInterval,
|
|
8432
|
-
hideGaps,
|
|
8433
8594
|
mutationFilterValue,
|
|
8434
8595
|
sequenceType: originalComponentProps.sequenceType,
|
|
8435
8596
|
annotationProvider
|
|
8436
|
-
})
|
|
8437
|
-
|
|
8438
|
-
|
|
8439
|
-
|
|
8440
|
-
|
|
8441
|
-
|
|
8442
|
-
|
|
8443
|
-
|
|
8444
|
-
|
|
8445
|
-
|
|
8446
|
-
|
|
8447
|
-
|
|
8448
|
-
|
|
8449
|
-
|
|
8450
|
-
|
|
8451
|
-
|
|
8452
|
-
|
|
8597
|
+
}),
|
|
8598
|
+
[
|
|
8599
|
+
overallMutationData,
|
|
8600
|
+
displayedSegments,
|
|
8601
|
+
displayedMutationTypes,
|
|
8602
|
+
proportionInterval,
|
|
8603
|
+
originalComponentProps.sequenceType,
|
|
8604
|
+
mutationFilterValue,
|
|
8605
|
+
annotationProvider
|
|
8606
|
+
]
|
|
8607
|
+
);
|
|
8608
|
+
y2(() => {
|
|
8609
|
+
setPageIndex(0);
|
|
8610
|
+
}, [filteredMutationCodes, setPageIndex]);
|
|
8611
|
+
const totalFilteredRows = filteredMutationCodes.length;
|
|
8612
|
+
const {
|
|
8613
|
+
isLoading: isPageLoading,
|
|
8614
|
+
data: pageData,
|
|
8615
|
+
pageMutationCodes
|
|
8616
|
+
} = useMutationsOverTimePageData(
|
|
8617
|
+
filteredMutationCodes,
|
|
8618
|
+
pageIndex,
|
|
8619
|
+
pageSize,
|
|
8620
|
+
lapisFilter,
|
|
8621
|
+
lapis,
|
|
8622
|
+
lapisDateField,
|
|
8623
|
+
sequenceType,
|
|
8624
|
+
requestedDateRanges,
|
|
8625
|
+
hideGaps
|
|
8626
|
+
);
|
|
8627
|
+
const mutationRenderer = T$1(
|
|
8628
|
+
() => ({
|
|
8629
|
+
asString: (value) => value.code,
|
|
8630
|
+
renderRowLabel: (value) => /* @__PURE__ */ u$1("div", { className: "text-center", children: /* @__PURE__ */ u$1(AnnotatedMutation, { mutation: value, sequenceType: originalComponentProps.sequenceType }) }),
|
|
8631
|
+
renderTooltip: (value, temporal, proportionValue) => /* @__PURE__ */ u$1(MutationsOverTimeGridTooltip, { mutation: value, date: temporal, value: proportionValue })
|
|
8632
|
+
}),
|
|
8633
|
+
[originalComponentProps.sequenceType]
|
|
8634
|
+
);
|
|
8453
8635
|
const getTab = (view) => {
|
|
8454
8636
|
switch (view) {
|
|
8455
8637
|
// eslint-disable-next-line @typescript-eslint/no-unnecessary-condition -- for extensibility
|
|
@@ -8457,12 +8639,18 @@ const MutationsOverTimeTabs$1 = ({
|
|
|
8457
8639
|
return {
|
|
8458
8640
|
title: "Grid",
|
|
8459
8641
|
content: /* @__PURE__ */ u$1(
|
|
8460
|
-
|
|
8642
|
+
FeaturesOverTimeGridServerPaginated,
|
|
8461
8643
|
{
|
|
8462
8644
|
rowLabelHeader: "Mutation",
|
|
8463
|
-
data:
|
|
8645
|
+
data: pageData,
|
|
8646
|
+
isLoading: isPageLoading,
|
|
8647
|
+
loadingRowLabels: pageMutationCodes,
|
|
8648
|
+
requestedDateRanges,
|
|
8464
8649
|
colorScale,
|
|
8465
8650
|
pageSizes: originalComponentProps.pageSizes,
|
|
8651
|
+
pageIndex,
|
|
8652
|
+
totalRows: totalFilteredRows,
|
|
8653
|
+
onPageChange: setPageIndex,
|
|
8466
8654
|
customColumns: originalComponentProps.customColumns,
|
|
8467
8655
|
featureRenderer: mutationRenderer,
|
|
8468
8656
|
tooltipPortalTarget
|
|
@@ -8484,15 +8672,16 @@ const MutationsOverTimeTabs$1 = ({
|
|
|
8484
8672
|
setProportionInterval,
|
|
8485
8673
|
hideGaps,
|
|
8486
8674
|
setHideGaps,
|
|
8487
|
-
filteredData,
|
|
8488
8675
|
colorScale,
|
|
8489
8676
|
setColorScale,
|
|
8490
8677
|
originalComponentProps,
|
|
8491
8678
|
setFilterValue: setMutationFilterValue,
|
|
8492
|
-
mutationFilterValue
|
|
8679
|
+
mutationFilterValue,
|
|
8680
|
+
filteredMutationCodes,
|
|
8681
|
+
metadata
|
|
8493
8682
|
}
|
|
8494
8683
|
);
|
|
8495
|
-
return /* @__PURE__ */ u$1("div", { ref: tooltipPortalTargetRef, children: /* @__PURE__ */ u$1(
|
|
8684
|
+
return /* @__PURE__ */ u$1("div", { ref: tooltipPortalTargetRef, children: /* @__PURE__ */ u$1(Tabs, { ref: tabsRef, tabs, toolbar }) });
|
|
8496
8685
|
};
|
|
8497
8686
|
const Toolbar$3 = ({
|
|
8498
8687
|
activeTab,
|
|
@@ -8504,13 +8693,27 @@ const Toolbar$3 = ({
|
|
|
8504
8693
|
setProportionInterval,
|
|
8505
8694
|
hideGaps,
|
|
8506
8695
|
setHideGaps,
|
|
8507
|
-
filteredData,
|
|
8508
8696
|
colorScale,
|
|
8509
8697
|
setColorScale,
|
|
8510
8698
|
originalComponentProps,
|
|
8511
8699
|
setFilterValue,
|
|
8512
|
-
mutationFilterValue
|
|
8700
|
+
mutationFilterValue,
|
|
8701
|
+
filteredMutationCodes,
|
|
8702
|
+
metadata
|
|
8513
8703
|
}) => {
|
|
8704
|
+
const lapis = useLapisUrl();
|
|
8705
|
+
const { lapisFilter, sequenceType, lapisDateField } = originalComponentProps;
|
|
8706
|
+
const getDownloadDataAsync = async () => {
|
|
8707
|
+
const pageData = await queryMutationsOverTimePage(
|
|
8708
|
+
lapisFilter,
|
|
8709
|
+
lapis,
|
|
8710
|
+
lapisDateField,
|
|
8711
|
+
sequenceType,
|
|
8712
|
+
metadata.requestedDateRanges,
|
|
8713
|
+
filteredMutationCodes
|
|
8714
|
+
);
|
|
8715
|
+
return getDownloadData$1(handleHideGaps(pageData, hideGaps));
|
|
8716
|
+
};
|
|
8514
8717
|
return /* @__PURE__ */ u$1(Fragment, { children: [
|
|
8515
8718
|
/* @__PURE__ */ u$1(MutationsOverTimeMutationsFilter, { setFilterValue, value: mutationFilterValue }),
|
|
8516
8719
|
/* @__PURE__ */ u$1(
|
|
@@ -8551,7 +8754,7 @@ const Toolbar$3 = ({
|
|
|
8551
8754
|
CsvDownloadButton,
|
|
8552
8755
|
{
|
|
8553
8756
|
className: "btn btn-xs",
|
|
8554
|
-
getData:
|
|
8757
|
+
getData: getDownloadDataAsync,
|
|
8555
8758
|
filename: "mutations_over_time.csv"
|
|
8556
8759
|
}
|
|
8557
8760
|
),
|