@genspectrum/dashboard-components 1.14.2 → 1.16.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/custom-elements.json +7 -7
- package/dist/components.d.ts +68 -67
- package/dist/components.js +67 -13
- package/dist/components.js.map +1 -1
- package/dist/util.d.ts +83 -65
- package/package.json +2 -9
- package/src/lapisApi/lapisTypes.ts +1 -1
- package/src/preact/mutationsOverTime/getFilteredMutationsOverTimeData.ts +3 -1
- package/src/preact/queriesOverTime/queries-over-time-row-label-tooltip.stories.tsx +58 -0
- package/src/preact/queriesOverTime/queries-over-time-row-label-tooltip.tsx +24 -0
- package/src/preact/queriesOverTime/queries-over-time.stories.tsx +24 -0
- package/src/preact/queriesOverTime/queries-over-time.tsx +63 -14
- package/src/utilEntrypoint.ts +1 -1
- package/src/web-components/gs-app.ts +2 -3
- package/src/web-components/input/gs-date-range-filter.tsx +2 -3
- package/src/web-components/input/gs-lineage-filter.tsx +2 -3
- package/src/web-components/input/gs-location-filter.tsx +2 -3
- package/src/web-components/input/gs-mutation-filter.tsx +3 -4
- package/src/web-components/input/gs-number-range-filter.tsx +2 -3
- package/src/web-components/input/gs-text-filter.tsx +2 -3
- package/src/web-components/mutation-annotations-context.ts +3 -1
- package/src/web-components/visualization/gs-aggregate.tsx +2 -3
- package/src/web-components/visualization/gs-genome-data-viewer.tsx +2 -3
- package/src/web-components/visualization/gs-mutation-comparison.tsx +2 -3
- package/src/web-components/visualization/gs-mutations-over-time.tsx +2 -3
- package/src/web-components/visualization/gs-mutations.tsx +7 -8
- package/src/web-components/visualization/gs-number-sequences-over-time.tsx +2 -3
- package/src/web-components/visualization/gs-prevalence-over-time.tsx +2 -3
- package/src/web-components/visualization/gs-queries-over-time.stories.ts +4 -0
- package/src/web-components/visualization/gs-queries-over-time.tsx +5 -4
- package/src/web-components/visualization/gs-relative-growth-advantage.tsx +2 -3
- package/src/web-components/visualization/gs-sequences-by-location.tsx +2 -3
- package/src/web-components/visualization/gs-statistics.tsx +2 -3
- package/src/web-components/wastewaterVisualization/gs-wastewater-mutations-over-time.tsx +2 -3
- package/standalone-bundle/dashboard-components.js +3573 -3527
- package/standalone-bundle/dashboard-components.js.map +1 -1
package/custom-elements.json
CHANGED
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@@ -3262,7 +3262,7 @@
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"kind": "field",
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"name": "baselineLapisFilter",
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"type": {
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"text": "(Record<string, string | string[] | number | null | boolean | undefined> & {\n
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"text": "(Record<string, string | string[] | number | null | boolean | undefined> & {\n nucleotideMutations?: string[];\n aminoAcidMutations?: string[];\n nucleotideInsertions?: string[];\n aminoAcidInsertions?: string[];\n })\n | undefined"
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},
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"default": "undefined",
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"description": "LAPIS filter to select the mutation counts that are used to compute the Jaccard similarity.\nIf not provided, the Jaccard similarity is not computed.\nFor details, see the [Jaccard Similarity](#jaccard-similarity) section in the component description.",
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@@ -3341,7 +3341,7 @@
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{
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"name": "baselineLapisFilter",
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"type": {
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"text": "(Record<string, string | string[] | number | null | boolean | undefined> & {\n
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"text": "(Record<string, string | string[] | number | null | boolean | undefined> & {\n nucleotideMutations?: string[];\n aminoAcidMutations?: string[];\n nucleotideInsertions?: string[];\n aminoAcidInsertions?: string[];\n })\n | undefined"
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},
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"default": "undefined",
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"description": "LAPIS filter to select the mutation counts that are used to compute the Jaccard similarity.\nIf not provided, the Jaccard similarity is not computed.\nFor details, see the [Jaccard Similarity](#jaccard-similarity) section in the component description.",
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@@ -4152,7 +4152,7 @@
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"type": {
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"text": "Meta<Required<QueriesOverTimeProps>>"
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},
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"default": "{ title: 'Visualization/Queries over time', component: 'gs-queries-over-time', argTypes: { lapisFilter: { control: 'object' }, queries: { control: 'object' }, views: { options: ['grid'], control: { type: 'check' }, }, width: { control: 'text' }, height: { control: 'text' }, granularity: { options: ['day', 'week', 'month', 'year'], control: { type: 'radio' }, }, lapisDateField: { control: 'text' }, initialMeanProportionInterval: { control: 'object' }, hideGaps: { control: 'boolean' }, pageSizes: { control: 'object' }, customColumns: { control: 'object' }, }, args: { lapisFilter: { pangoLineage: 'JN.1*', dateFrom: '2024-01-15', dateTo: '2024-04-30' }, queries: [ { displayLabel: 'S:F456L (single mutation)', countQuery: 'S:456L', coverageQuery: '!S:456N', }, { displayLabel: 'R346T + F456L (combination)', countQuery: 'S:346T & S:456L', coverageQuery: '!S:346N & !S:456N', }, { displayLabel: 'C22916T or T22917G (nucleotide OR)', countQuery: 'C22916T | T22917G', coverageQuery: '!22916N & !22917N', }, ], views: ['grid'], width: '100%', granularity: 'month', lapisDateField: 'date', initialMeanProportionInterval: { min: 0, max: 1 }, hideGaps: false, pageSizes: [10, 20, 30, 40, 50], }, parameters: withComponentDocs({ componentDocs: { opensShadowDom: true, expectsChildren: false, codeExample, }, fetchMock: { mocks: [ { matcher: { url: `${LAPIS_URL}/component/queriesOverTime`, body: { filters: { pangoLineage: 'JN.1*', dateFrom: '2024-01-15', dateTo: '2024-04-30', }, queries: [ { displayLabel: 'S:F456L (single mutation)', countQuery: 'S:456L', coverageQuery: '!S:456N', }, { displayLabel: 'R346T + F456L (combination)', countQuery: 'S:346T & S:456L', coverageQuery: '!S:346N & !S:456N', }, { displayLabel: 'C22916T or T22917G (nucleotide OR)', countQuery: 'C22916T | T22917G', coverageQuery: '!22916N & !22917N', }, ], dateRanges: [ { dateFrom: '2024-01-01', dateTo: '2024-01-31' }, { dateFrom: '2024-02-01', dateTo: '2024-02-29' }, { dateFrom: '2024-03-01', dateTo: '2024-03-31' }, { dateFrom: '2024-04-01', dateTo: '2024-04-30' }, ], dateField: 'date', }, matchPartialBody: true, response: { status: 200, body: mockDefaultQueriesOverTime, }, }, }, ], }, }), tags: ['autodocs'], }"
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"default": "{ title: 'Visualization/Queries over time', component: 'gs-queries-over-time', argTypes: { lapisFilter: { control: 'object' }, queries: { control: 'object' }, views: { options: ['grid'], control: { type: 'check' }, }, width: { control: 'text' }, height: { control: 'text' }, granularity: { options: ['day', 'week', 'month', 'year'], control: { type: 'radio' }, }, lapisDateField: { control: 'text' }, initialMeanProportionInterval: { control: 'object' }, hideGaps: { control: 'boolean' }, pageSizes: { control: 'object' }, customColumns: { control: 'object' }, }, args: { lapisFilter: { pangoLineage: 'JN.1*', dateFrom: '2024-01-15', dateTo: '2024-04-30' }, queries: [ { displayLabel: 'S:F456L (single mutation)', description: 'This mutation is associated with increased transmissibility.', countQuery: 'S:456L', coverageQuery: '!S:456N', }, { displayLabel: 'R346T + F456L (combination)', description: 'Common mutation combination found in the JN.1 lineage.', countQuery: 'S:346T & S:456L', coverageQuery: '!S:346N & !S:456N', }, { displayLabel: 'C22916T or T22917G (nucleotide OR)', countQuery: 'C22916T | T22917G', coverageQuery: '!22916N & !22917N', }, ], views: ['grid'], width: '100%', granularity: 'month', lapisDateField: 'date', initialMeanProportionInterval: { min: 0, max: 1 }, hideGaps: false, pageSizes: [10, 20, 30, 40, 50], }, parameters: withComponentDocs({ componentDocs: { opensShadowDom: true, expectsChildren: false, codeExample, }, fetchMock: { mocks: [ { matcher: { url: `${LAPIS_URL}/component/queriesOverTime`, body: { filters: { pangoLineage: 'JN.1*', dateFrom: '2024-01-15', dateTo: '2024-04-30', }, queries: [ { displayLabel: 'S:F456L (single mutation)', countQuery: 'S:456L', coverageQuery: '!S:456N', }, { displayLabel: 'R346T + F456L (combination)', countQuery: 'S:346T & S:456L', coverageQuery: '!S:346N & !S:456N', }, { displayLabel: 'C22916T or T22917G (nucleotide OR)', countQuery: 'C22916T | T22917G', coverageQuery: '!22916N & !22917N', }, ], dateRanges: [ { dateFrom: '2024-01-01', dateTo: '2024-01-31' }, { dateFrom: '2024-02-01', dateTo: '2024-02-29' }, { dateFrom: '2024-03-01', dateTo: '2024-03-31' }, { dateFrom: '2024-04-01', dateTo: '2024-04-30' }, ], dateField: 'date', }, matchPartialBody: true, response: { status: 200, body: mockDefaultQueriesOverTime, }, }, }, ], }, }), tags: ['autodocs'], }"
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},
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{
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"kind": "variable",
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"kind": "field",
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"name": "queries",
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"type": {
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"text": "{\n displayLabel: string;\n countQuery: string;\n coverageQuery: string;\n }[]"
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"text": "{\n displayLabel: string;\n description?: string;\n countQuery: string;\n coverageQuery: string;\n }[]"
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},
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"default": "[]",
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"description": "Required.\n\nArray of queries to display. Each query has:\n- displayLabel: string - The name to show in the grid row label\n- countQuery: string - Query string to count matches\n- coverageQuery: string - Query string to determine coverage/denominator\n\nBoth queries (count and coverage) are 'advanced queries' as they are defined in LAPIS.",
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"description": "Required.\n\nArray of queries to display. Each query has:\n- displayLabel: string - The name to show in the grid row label. Must be unique.\n- description: string (optional) - Optional description shown in tooltip\n- countQuery: string - Query string to count matches\n- coverageQuery: string - Query string to determine coverage/denominator\n\nBoth queries (count and coverage) are 'advanced queries' as they are defined in LAPIS.",
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"attribute": "queries"
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},
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{
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{
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"name": "queries",
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"type": {
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"text": "{\n displayLabel: string;\n countQuery: string;\n coverageQuery: string;\n }[]"
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"text": "{\n displayLabel: string;\n description?: string;\n countQuery: string;\n coverageQuery: string;\n }[]"
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},
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"default": "[]",
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"description": "Required.\n\nArray of queries to display. Each query has:\n- displayLabel: string - The name to show in the grid row label\n- countQuery: string - Query string to count matches\n- coverageQuery: string - Query string to determine coverage/denominator\n\nBoth queries (count and coverage) are 'advanced queries' as they are defined in LAPIS.",
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"description": "Required.\n\nArray of queries to display. Each query has:\n- displayLabel: string - The name to show in the grid row label. Must be unique.\n- description: string (optional) - Optional description shown in tooltip\n- countQuery: string - Query string to count matches\n- coverageQuery: string - Query string to determine coverage/denominator\n\nBoth queries (count and coverage) are 'advanced queries' as they are defined in LAPIS.",
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"fieldName": "queries"
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},
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{
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package/dist/components.d.ts
CHANGED
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import { CSSResult } from 'lit';
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import { default as default_2 } from 'zod';
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import { JSX as JSX_2 } from 'react';
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import { JSXInternal } from 'preact/src/jsx';
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import { LitElement } from 'lit';
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*/
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render():
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}
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/**
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* The name of the metadata field in LAPIS that contains the date information.
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*/
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lapisDateField: string;
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render():
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render(): React.JSX.Element;
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}
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declare class ErrorEvent_2 extends Event {
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* Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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*/
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}
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/**
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}
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declare type MutationAnnotations = default_2.infer<typeof mutationAnnotationsSchema>;
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/* Excluded from this release type: mutationAnnotations */
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declare type MutationLinkTemplate = default_2.infer<typeof mutationLinkTemplateSchema>;
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}[];
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declare type MutationType = default_2.infer<typeof mutationTypeSchema>;
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* Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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*/
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/**
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declare abstract class PreactLitAdapter extends ReactiveElement {
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yAxisMaxLogarithmic: 'maxInData' | 'limitTo1' | number;
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/**
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* Required.
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queries: {
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displayLabel: string;
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countQuery: string;
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header: string;
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values: Record<string, string | number>;
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}[];
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}
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declare type ReferenceGenome = default_2.infer<typeof referenceGenomeResponse>;
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* If not set, the maximum value is set to the default value (1).
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*/
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yAxisMaxLogarithmic: 'maxInData' | 'limitTo1' | number;
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render():
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}
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/**
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* Set to `false` to disable pagination. Set to `true` to enable pagination with a default limit (10).
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pageSize: boolean | number;
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render():
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}
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/**
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* Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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height: string | undefined;
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}
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/**
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*/
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width: string;
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}
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export declare class UserFacingError extends Error {
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pageSizes: number[] | number;
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/* Excluded from this release type: mutationAnnotations */
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/* Excluded from this release type: mutationLinkTemplate */
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}
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export { }
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declare global {
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interface IntrinsicElements {
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}
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declare global {
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interface HTMLElementTagNameMap {
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'gs-
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'gs-genome-data-viewer': GenomeDataViewerComponent;
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}
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}
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declare global {
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interface IntrinsicElements {
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'gs-genome-data-viewer': GenomeDataViewerComponent;
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}
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}
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declare global {
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interface HTMLElementTagNameMap {
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'gs-mutation-comparison': MutationComparisonComponent;
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}
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}
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declare global {
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interface IntrinsicElements {
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'gs-mutation-comparison': MutationComparisonComponent;
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}
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}
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declare global {
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interface HTMLElementTagNameMap {
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'gs-mutations': MutationsComponent;
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}
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}
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declare global {
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namespace JSX {
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namespace React.JSX {
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interface IntrinsicElements {
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'gs-mutations': MutationsComponent;
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}
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}
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declare global {
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interface HTMLElementTagNameMap {
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'gs-
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'gs-prevalence-over-time': PrevalenceOverTimeComponent;
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}
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}
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declare global {
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namespace JSX {
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namespace React.JSX {
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interface IntrinsicElements {
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'gs-prevalence-over-time': PrevalenceOverTimeComponent;
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}
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}
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}
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declare global {
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namespace JSX {
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namespace React.JSX {
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interface IntrinsicElements {
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'gs-relative-growth-advantage':
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'gs-relative-growth-advantage': RelativeGrowthAdvantageComponent;
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}
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}
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declare global {
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interface HTMLElementTagNameMap {
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'gs-
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'gs-number-sequences-over-time': NumberSequencesOverTimeComponent;
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}
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}
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declare global {
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namespace JSX {
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namespace React.JSX {
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interface IntrinsicElements {
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'gs-
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'gs-number-sequences-over-time': NumberSequencesOverTimeComponent;
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}
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}
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}
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@@ -1877,9 +1878,9 @@ declare global {
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declare global {
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namespace JSX {
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namespace React.JSX {
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interface IntrinsicElements {
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'gs-aggregate':
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'gs-aggregate': AggregateComponent;
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}
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}
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}
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declare global {
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interface HTMLElementTagNameMap {
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'gs-
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'gs-mutations-over-time': MutationsOverTimeComponent;
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}
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}
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declare global {
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namespace JSX {
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namespace React.JSX {
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interface IntrinsicElements {
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'gs-mutations-over-time': MutationsOverTimeComponent;
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}
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}
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@@ -1903,15 +1904,15 @@ declare global {
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declare global {
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interface HTMLElementTagNameMap {
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'gs-queries-over-time': QueriesOverTimeComponent;
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}
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}
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declare global {
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namespace JSX {
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namespace React.JSX {
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interface IntrinsicElements {
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|
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'gs-queries-over-time': QueriesOverTimeComponent;
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}
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}
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}
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@@ -1919,15 +1920,15 @@ declare global {
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declare global {
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interface HTMLElementTagNameMap {
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'gs-
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|
+
'gs-statistics': StatisticsComponent;
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|
}
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}
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declare global {
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namespace JSX {
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namespace React.JSX {
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|
interface IntrinsicElements {
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'gs-statistics': StatisticsComponent;
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}
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}
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}
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@@ -1941,9 +1942,9 @@ declare global {
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declare global {
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|
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namespace JSX {
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|
+
namespace React.JSX {
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1945
1946
|
interface IntrinsicElements {
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1946
|
-
'gs-sequences-by-location':
|
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|
+
'gs-sequences-by-location': SequencesByLocationComponent;
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|
}
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}
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}
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@@ -1951,15 +1952,15 @@ declare global {
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declare global {
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interface HTMLElementTagNameMap {
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|
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'gs-
|
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1955
|
+
'gs-wastewater-mutations-over-time': WastewaterMutationsOverTimeComponent;
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}
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}
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declare global {
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|
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namespace JSX {
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|
+
namespace React.JSX {
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1961
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|
interface IntrinsicElements {
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|
1962
|
-
'gs-
|
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1963
|
+
'gs-wastewater-mutations-over-time': WastewaterMutationsOverTimeComponent;
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|
}
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}
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}
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@@ -1977,9 +1978,9 @@ declare global {
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declare global {
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1980
|
-
namespace JSX {
|
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1981
|
+
namespace React.JSX {
|
|
1981
1982
|
interface IntrinsicElements {
|
|
1982
|
-
'gs-date-range-filter':
|
|
1983
|
+
'gs-date-range-filter': DateRangeFilterComponent;
|
|
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1984
|
}
|
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}
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}
|
|
@@ -1996,9 +1997,9 @@ declare global {
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1996
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declare global {
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1999
|
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namespace JSX {
|
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2000
|
+
namespace React.JSX {
|
|
2000
2001
|
interface IntrinsicElements {
|
|
2001
|
-
'gs-location-filter':
|
|
2002
|
+
'gs-location-filter': LocationFilterComponent;
|
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2003
|
}
|
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2003
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|
}
|
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|
}
|
|
@@ -2015,9 +2016,9 @@ declare global {
|
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2015
2016
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2016
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2017
2018
|
declare global {
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|
2018
|
-
namespace JSX {
|
|
2019
|
+
namespace React.JSX {
|
|
2019
2020
|
interface IntrinsicElements {
|
|
2020
|
-
'gs-text-filter':
|
|
2021
|
+
'gs-text-filter': TextFilterComponent;
|
|
2021
2022
|
}
|
|
2022
2023
|
}
|
|
2023
2024
|
}
|
|
@@ -2034,9 +2035,9 @@ declare global {
|
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2034
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2036
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|
declare global {
|
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2037
|
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namespace JSX {
|
|
2038
|
+
namespace React.JSX {
|
|
2038
2039
|
interface IntrinsicElements {
|
|
2039
|
-
'gs-mutation-filter':
|
|
2040
|
+
'gs-mutation-filter': MutationFilterComponent;
|
|
2040
2041
|
}
|
|
2041
2042
|
}
|
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2042
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|
}
|
|
@@ -2054,9 +2055,9 @@ declare global {
|
|
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2054
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2056
2057
|
declare global {
|
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2057
|
-
namespace JSX {
|
|
2058
|
+
namespace React.JSX {
|
|
2058
2059
|
interface IntrinsicElements {
|
|
2059
|
-
'gs-lineage-filter':
|
|
2060
|
+
'gs-lineage-filter': LineageFilterComponent;
|
|
2060
2061
|
}
|
|
2061
2062
|
}
|
|
2062
2063
|
}
|
|
@@ -2074,9 +2075,9 @@ declare global {
|
|
|
2074
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|
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2075
2076
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2076
2077
|
declare global {
|
|
2077
|
-
namespace JSX {
|
|
2078
|
+
namespace React.JSX {
|
|
2078
2079
|
interface IntrinsicElements {
|
|
2079
|
-
'gs-number-range-filter':
|
|
2080
|
+
'gs-number-range-filter': NumberRangeFilterComponent;
|
|
2080
2081
|
}
|
|
2081
2082
|
}
|
|
2082
2083
|
}
|