@genspectrum/dashboard-components 1.12.0 → 1.13.0

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Files changed (57) hide show
  1. package/README.md +0 -7
  2. package/custom-elements.json +6 -25
  3. package/dist/components.d.ts +30 -36
  4. package/dist/components.js +943 -757
  5. package/dist/components.js.map +1 -1
  6. package/dist/util.d.ts +46 -30
  7. package/package.json +1 -5
  8. package/src/lapisApi/lapisApi.ts +21 -1
  9. package/src/lapisApi/lapisTypes.ts +36 -0
  10. package/src/preact/components/annotated-mutation.tsx +2 -2
  11. package/src/preact/{mutationsOverTime/mutations-over-time-grid.tsx → components/features-over-time-grid.tsx} +45 -52
  12. package/src/preact/genomeViewer/genome-data-viewer.tsx +2 -2
  13. package/src/preact/mutationsOverTime/MutationOverTimeData.ts +6 -4
  14. package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutationsByDay/aminoAcidMutations.json +5482 -0
  15. package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutationsByDay/aminoAcidMutationsOverTime.json +5496 -0
  16. package/src/preact/mutationsOverTime/__mockData__/byWeek/mutationsOverTime.json +7100 -0
  17. package/src/preact/mutationsOverTime/__mockData__/byWeek/nucleotideMutations.json +10122 -0
  18. package/src/preact/mutationsOverTime/__mockData__/defaultMockData/mutationsOverTime.json +12646 -0
  19. package/src/preact/mutationsOverTime/__mockData__/defaultMockData/nucleotideMutations.json +12632 -0
  20. package/src/preact/mutationsOverTime/__mockData__/request1800s/mutationsOverTime.json +16 -0
  21. package/src/preact/mutationsOverTime/__mockData__/request1800s/nucleotideMutations.json +11 -0
  22. package/src/preact/mutationsOverTime/__mockData__/withDisplayMutations/mutationsOverTime.json +52 -0
  23. package/src/preact/mutationsOverTime/getFilteredMutationsOverTime.spec.ts +3 -3
  24. package/src/preact/mutationsOverTime/mutations-over-time-grid-tooltip.tsx +3 -6
  25. package/src/preact/mutationsOverTime/mutations-over-time.stories.tsx +199 -12
  26. package/src/preact/mutationsOverTime/mutations-over-time.tsx +30 -35
  27. package/src/preact/wastewater/mutationsOverTime/wastewater-mutations-over-time.tsx +30 -3
  28. package/src/query/queryDatesInDataset.ts +89 -0
  29. package/src/query/queryMutationsOverTime.spec.ts +526 -548
  30. package/src/query/queryMutationsOverTime.ts +21 -232
  31. package/src/query/queryQueriesOverTime.spec.ts +432 -0
  32. package/src/query/queryQueriesOverTime.ts +125 -0
  33. package/src/utilEntrypoint.ts +3 -1
  34. package/src/utils/mutations.spec.ts +6 -0
  35. package/src/utils/mutations.ts +1 -1
  36. package/src/utils/temporalClass.ts +4 -0
  37. package/src/web-components/visualization/gs-mutations-over-time.spec-d.ts +0 -3
  38. package/src/web-components/visualization/gs-mutations-over-time.stories.ts +283 -17
  39. package/src/web-components/visualization/gs-mutations-over-time.tsx +0 -9
  40. package/standalone-bundle/dashboard-components.js +8935 -8781
  41. package/standalone-bundle/dashboard-components.js.map +1 -1
  42. package/dist/assets/mutationOverTimeWorker-f8Kp0S6V.js.map +0 -1
  43. package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutationsByDay.ts +0 -47170
  44. package/src/preact/mutationsOverTime/__mockData__/byWeek.ts +0 -54026
  45. package/src/preact/mutationsOverTime/__mockData__/defaultMockData.ts +0 -108385
  46. package/src/preact/mutationsOverTime/__mockData__/mockConversion.ts +0 -54
  47. package/src/preact/mutationsOverTime/__mockData__/noDataWhenNoMutationsAreInFilter.ts +0 -23
  48. package/src/preact/mutationsOverTime/__mockData__/noDataWhenThereAreNoDatesInFilter.ts +0 -23
  49. package/src/preact/mutationsOverTime/__mockData__/showsMessageWhenTooManyMutations.ts +0 -65527
  50. package/src/preact/mutationsOverTime/__mockData__/withDisplayMutations.ts +0 -352
  51. package/src/preact/mutationsOverTime/__mockData__/withGaps.ts +0 -298
  52. package/src/preact/mutationsOverTime/mutationOverTimeWorker.mock.ts +0 -33
  53. package/src/preact/mutationsOverTime/mutationOverTimeWorker.ts +0 -29
  54. package/src/preact/webWorkers/useWebWorker.ts +0 -74
  55. package/src/preact/webWorkers/workerFunction.ts +0 -30
  56. package/src/query/queryMutationsOverTimeNewEndpoint.spec.ts +0 -988
  57. package/standalone-bundle/assets/mutationOverTimeWorker-AhhjjklP.js.map +0 -1
@@ -1,54 +0,0 @@
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- import type { MutationOverTimeMutationValue, MutationOverTimeQuery } from '../../../query/queryMutationsOverTime';
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- import type { SubstitutionOrDeletionEntry } from '../../../types';
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- import type { Deletion, Substitution } from '../../../utils/mutations';
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- import type { Temporal } from '../../../utils/temporalClass';
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-
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- export type MutationOverTimeMockData = {
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- query: MutationOverTimeQuery;
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- response: {
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- overallMutationData: SubstitutionOrDeletionEntry<Substitution, Deletion>[];
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- mutationOverTimeSerializedAsArray: {
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- keysFirstAxis: [string, Substitution | Deletion][];
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- keysSecondAxis: [string, Temporal][];
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- data: [string, [string, MutationOverTimeMutationValue][]][];
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- };
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- };
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- };
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-
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- export function getMutationOverTimeMock(mockData: MutationOverTimeMockData) {
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- return {
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- query: mockData.query,
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- response: {
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- overallMutationData: mockData.response.overallMutationData,
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- mutationOverTimeSerialized: get2dMapFromArray({
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- ...mockData.response.mutationOverTimeSerializedAsArray,
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- }),
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- },
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- };
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- }
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-
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- function get2dMapFromArray({
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- keysFirstAxis,
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- keysSecondAxis,
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- data,
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- }: {
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- keysFirstAxis: [string, Substitution | Deletion][];
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- keysSecondAxis: [string, Temporal][];
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- data: [string, [string, MutationOverTimeMutationValue][]][];
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- }) {
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- const keysFirstAxisMap = new Map<string, Substitution | Deletion>(keysFirstAxis);
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- const keysSecondAxisMap = new Map<string, Temporal>(keysSecondAxis);
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-
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- const dataMapArrays = data.map(([keyFirstAxis, dataMapArray]) => {
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- const dataMap = new Map<string, MutationOverTimeMutationValue>(dataMapArray);
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- return [keyFirstAxis, dataMap] as [string, Map<string, MutationOverTimeMutationValue>];
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- });
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-
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- const dataMap = new Map<string, Map<string, MutationOverTimeMutationValue>>(dataMapArrays);
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-
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- return {
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- keysFirstAxis: keysFirstAxisMap,
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- keysSecondAxis: keysSecondAxisMap,
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- data: dataMap,
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- };
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- }
@@ -1,23 +0,0 @@
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- import type { MutationOverTimeMockData } from './mockConversion';
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-
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- export const noDataWhenNoMutationsAreInFilter: MutationOverTimeMockData = {
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- query: {
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- lapisFilter: {
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- dateFrom: '1800-01-01',
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- dateTo: '1800-01-02',
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- },
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- sequenceType: 'nucleotide',
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- granularity: 'year',
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- lapisDateField: 'date',
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- lapis: 'https://lapis.cov-spectrum.org/open/v2',
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- useNewEndpoint: false,
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- },
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- response: {
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- overallMutationData: [],
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- mutationOverTimeSerializedAsArray: {
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- keysFirstAxis: [],
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- keysSecondAxis: [],
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- data: [],
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- },
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- },
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- };
@@ -1,23 +0,0 @@
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- import type { MutationOverTimeMockData } from './mockConversion';
2
-
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- export const noDataWhenNoMutationsAreInFilter: MutationOverTimeMockData = {
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- query: {
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- lapisFilter: {
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- dateFrom: '2345-01-01',
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- dateTo: '2020-01-02',
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- },
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- sequenceType: 'nucleotide',
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- granularity: 'year',
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- lapisDateField: 'date',
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- lapis: 'https://lapis.cov-spectrum.org/open/v2',
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- useNewEndpoint: false,
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- },
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- response: {
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- overallMutationData: [],
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- mutationOverTimeSerializedAsArray: {
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- keysFirstAxis: [],
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- keysSecondAxis: [],
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- data: [],
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- },
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- },
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- };