@genspectrum/dashboard-components 1.11.1 → 1.13.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +0 -7
- package/custom-elements.json +6 -25
- package/dist/components.d.ts +24 -30
- package/dist/components.js +929 -742
- package/dist/components.js.map +1 -1
- package/dist/util.d.ts +40 -24
- package/package.json +1 -5
- package/src/lapisApi/lapisApi.ts +21 -1
- package/src/lapisApi/lapisTypes.ts +37 -0
- package/src/preact/components/annotated-mutation.tsx +2 -2
- package/src/preact/{mutationsOverTime/mutations-over-time-grid.tsx → components/features-over-time-grid.tsx} +45 -52
- package/src/preact/genomeViewer/genome-data-viewer.tsx +2 -2
- package/src/preact/mutationsOverTime/MutationOverTimeData.ts +6 -4
- package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutationsByDay/aminoAcidMutations.json +5482 -0
- package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutationsByDay/aminoAcidMutationsOverTime.json +5496 -0
- package/src/preact/mutationsOverTime/__mockData__/byWeek/mutationsOverTime.json +7100 -0
- package/src/preact/mutationsOverTime/__mockData__/byWeek/nucleotideMutations.json +10122 -0
- package/src/preact/mutationsOverTime/__mockData__/defaultMockData/mutationsOverTime.json +12646 -0
- package/src/preact/mutationsOverTime/__mockData__/defaultMockData/nucleotideMutations.json +12632 -0
- package/src/preact/mutationsOverTime/__mockData__/request1800s/mutationsOverTime.json +16 -0
- package/src/preact/mutationsOverTime/__mockData__/request1800s/nucleotideMutations.json +11 -0
- package/src/preact/mutationsOverTime/__mockData__/withDisplayMutations/mutationsOverTime.json +52 -0
- package/src/preact/mutationsOverTime/getFilteredMutationsOverTime.spec.ts +3 -3
- package/src/preact/mutationsOverTime/mutations-over-time-grid-tooltip.tsx +3 -6
- package/src/preact/mutationsOverTime/mutations-over-time.stories.tsx +199 -12
- package/src/preact/mutationsOverTime/mutations-over-time.tsx +30 -35
- package/src/preact/wastewater/mutationsOverTime/wastewater-mutations-over-time.tsx +30 -3
- package/src/query/queryDatesInDataset.ts +89 -0
- package/src/query/queryMutationsOverTime.spec.ts +526 -548
- package/src/query/queryMutationsOverTime.ts +22 -245
- package/src/query/queryQueriesOverTime.spec.ts +432 -0
- package/src/query/queryQueriesOverTime.ts +125 -0
- package/src/utilEntrypoint.ts +3 -1
- package/src/utils/mutations.spec.ts +6 -0
- package/src/utils/mutations.ts +1 -1
- package/src/utils/temporalClass.ts +4 -0
- package/src/web-components/visualization/gs-mutation-comparison.tsx +2 -2
- package/src/web-components/visualization/gs-mutations-over-time.spec-d.ts +0 -3
- package/src/web-components/visualization/gs-mutations-over-time.stories.ts +283 -17
- package/src/web-components/visualization/gs-mutations-over-time.tsx +0 -9
- package/standalone-bundle/dashboard-components.js +8935 -8780
- package/standalone-bundle/dashboard-components.js.map +1 -1
- package/dist/assets/mutationOverTimeWorker-CQQFRoK4.js.map +0 -1
- package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutationsByDay.ts +0 -47170
- package/src/preact/mutationsOverTime/__mockData__/byWeek.ts +0 -54026
- package/src/preact/mutationsOverTime/__mockData__/defaultMockData.ts +0 -108385
- package/src/preact/mutationsOverTime/__mockData__/mockConversion.ts +0 -54
- package/src/preact/mutationsOverTime/__mockData__/noDataWhenNoMutationsAreInFilter.ts +0 -23
- package/src/preact/mutationsOverTime/__mockData__/noDataWhenThereAreNoDatesInFilter.ts +0 -23
- package/src/preact/mutationsOverTime/__mockData__/showsMessageWhenTooManyMutations.ts +0 -65527
- package/src/preact/mutationsOverTime/__mockData__/withDisplayMutations.ts +0 -352
- package/src/preact/mutationsOverTime/__mockData__/withGaps.ts +0 -298
- package/src/preact/mutationsOverTime/mutationOverTimeWorker.mock.ts +0 -33
- package/src/preact/mutationsOverTime/mutationOverTimeWorker.ts +0 -29
- package/src/preact/webWorkers/useWebWorker.ts +0 -74
- package/src/preact/webWorkers/workerFunction.ts +0 -30
- package/src/query/queryMutationsOverTimeNewEndpoint.spec.ts +0 -1179
- package/standalone-bundle/assets/mutationOverTimeWorker-DIpJukJC.js.map +0 -1
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import type { MutationOverTimeMutationValue, MutationOverTimeQuery } from '../../../query/queryMutationsOverTime';
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import type { SubstitutionOrDeletionEntry } from '../../../types';
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import type { Deletion, Substitution } from '../../../utils/mutations';
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import type { Temporal } from '../../../utils/temporalClass';
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export type MutationOverTimeMockData = {
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query: MutationOverTimeQuery;
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response: {
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overallMutationData: SubstitutionOrDeletionEntry<Substitution, Deletion>[];
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mutationOverTimeSerializedAsArray: {
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keysFirstAxis: [string, Substitution | Deletion][];
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keysSecondAxis: [string, Temporal][];
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data: [string, [string, MutationOverTimeMutationValue][]][];
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};
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};
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};
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export function getMutationOverTimeMock(mockData: MutationOverTimeMockData) {
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return {
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query: mockData.query,
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response: {
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overallMutationData: mockData.response.overallMutationData,
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mutationOverTimeSerialized: get2dMapFromArray({
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...mockData.response.mutationOverTimeSerializedAsArray,
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}),
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},
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};
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}
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function get2dMapFromArray({
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keysFirstAxis,
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keysSecondAxis,
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data,
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}: {
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keysFirstAxis: [string, Substitution | Deletion][];
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keysSecondAxis: [string, Temporal][];
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data: [string, [string, MutationOverTimeMutationValue][]][];
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}) {
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const keysFirstAxisMap = new Map<string, Substitution | Deletion>(keysFirstAxis);
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const keysSecondAxisMap = new Map<string, Temporal>(keysSecondAxis);
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const dataMapArrays = data.map(([keyFirstAxis, dataMapArray]) => {
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const dataMap = new Map<string, MutationOverTimeMutationValue>(dataMapArray);
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return [keyFirstAxis, dataMap] as [string, Map<string, MutationOverTimeMutationValue>];
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});
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const dataMap = new Map<string, Map<string, MutationOverTimeMutationValue>>(dataMapArrays);
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return {
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keysFirstAxis: keysFirstAxisMap,
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keysSecondAxis: keysSecondAxisMap,
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data: dataMap,
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};
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}
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import type { MutationOverTimeMockData } from './mockConversion';
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export const noDataWhenNoMutationsAreInFilter: MutationOverTimeMockData = {
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query: {
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lapisFilter: {
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dateFrom: '1800-01-01',
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dateTo: '1800-01-02',
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},
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sequenceType: 'nucleotide',
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granularity: 'year',
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lapisDateField: 'date',
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lapis: 'https://lapis.cov-spectrum.org/open/v2',
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useNewEndpoint: false,
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},
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response: {
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overallMutationData: [],
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mutationOverTimeSerializedAsArray: {
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keysFirstAxis: [],
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keysSecondAxis: [],
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data: [],
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},
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},
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};
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import type { MutationOverTimeMockData } from './mockConversion';
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export const noDataWhenNoMutationsAreInFilter: MutationOverTimeMockData = {
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query: {
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lapisFilter: {
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dateFrom: '2345-01-01',
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dateTo: '2020-01-02',
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},
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sequenceType: 'nucleotide',
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granularity: 'year',
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lapisDateField: 'date',
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lapis: 'https://lapis.cov-spectrum.org/open/v2',
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useNewEndpoint: false,
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},
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response: {
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overallMutationData: [],
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mutationOverTimeSerializedAsArray: {
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keysFirstAxis: [],
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keysSecondAxis: [],
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data: [],
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},
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},
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};
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