@genspectrum/dashboard-components 1.1.0 → 1.3.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (109) hide show
  1. package/custom-elements.json +22 -3
  2. package/dist/{NumberRangeFilterChangedEvent-B64OQZjX.js → NumberRangeFilterChangedEvent-CQ32Qy8D.js} +2 -2
  3. package/dist/NumberRangeFilterChangedEvent-CQ32Qy8D.js.map +1 -0
  4. package/dist/assets/mutationOverTimeWorker-C7saVShx.js.map +1 -0
  5. package/dist/components.d.ts +33 -27
  6. package/dist/components.js +119 -127
  7. package/dist/components.js.map +1 -1
  8. package/dist/util.d.ts +27 -27
  9. package/dist/util.js +1 -1
  10. package/package.json +7 -3
  11. package/src/lapisApi/lapisApi.ts +31 -2
  12. package/src/lapisApi/lapisTypes.ts +35 -1
  13. package/src/operator/DivisionOperator.ts +4 -2
  14. package/src/operator/FetchDetailsOperator.ts +1 -1
  15. package/src/operator/RenameFieldOperator.ts +3 -3
  16. package/src/preact/aggregatedData/aggregate.tsx +0 -5
  17. package/src/preact/components/annotated-mutation.tsx +0 -1
  18. package/src/preact/components/clearable-select.stories.tsx +1 -1
  19. package/src/preact/components/confidence-interval-selector.tsx +1 -1
  20. package/src/preact/components/error-boundary.tsx +1 -5
  21. package/src/preact/components/error-display.tsx +1 -1
  22. package/src/preact/components/fullscreen.tsx +2 -5
  23. package/src/preact/components/info.stories.tsx +1 -1
  24. package/src/preact/components/min-max-range-slider.tsx +1 -1
  25. package/src/preact/components/proportion-selector.tsx +4 -4
  26. package/src/preact/components/select.tsx +1 -1
  27. package/src/preact/components/table.tsx +1 -1
  28. package/src/preact/components/tabs.tsx +1 -1
  29. package/src/preact/components/tooltip.stories.tsx +1 -1
  30. package/src/preact/components/tooltip.tsx +1 -1
  31. package/src/preact/genomeViewer/CDSPlot.tsx +3 -3
  32. package/src/preact/genomeViewer/loadGff3.ts +5 -8
  33. package/src/preact/lineageFilter/lineage-filter.tsx +1 -1
  34. package/src/preact/locationFilter/location-filter.tsx +4 -4
  35. package/src/preact/mutationComparison/getMutationComparisonTableData.ts +1 -3
  36. package/src/preact/mutationComparison/mutation-comparison-venn.tsx +1 -1
  37. package/src/preact/mutationComparison/mutation-comparison.tsx +0 -5
  38. package/src/preact/mutationFilter/mutation-filter-info.tsx +2 -2
  39. package/src/preact/mutationFilter/mutation-filter.tsx +1 -1
  40. package/src/preact/mutations/getMutationsGridData.ts +2 -6
  41. package/src/preact/mutations/getMutationsTableData.ts +1 -1
  42. package/src/preact/mutations/mutations-grid.tsx +1 -1
  43. package/src/preact/mutations/mutations.tsx +0 -5
  44. package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutationsByDay.ts +1 -0
  45. package/src/preact/mutationsOverTime/__mockData__/byWeek.ts +1 -0
  46. package/src/preact/mutationsOverTime/__mockData__/defaultMockData.ts +1 -0
  47. package/src/preact/mutationsOverTime/__mockData__/noDataWhenNoMutationsAreInFilter.ts +1 -0
  48. package/src/preact/mutationsOverTime/__mockData__/noDataWhenThereAreNoDatesInFilter.ts +1 -0
  49. package/src/preact/mutationsOverTime/__mockData__/showsMessageWhenTooManyMutations.ts +1 -0
  50. package/src/preact/mutationsOverTime/mutations-over-time.stories.tsx +2 -0
  51. package/src/preact/mutationsOverTime/mutations-over-time.tsx +11 -11
  52. package/src/preact/numberRangeFilter/number-range-filter.tsx +4 -4
  53. package/src/preact/numberSequencesOverTime/getNumberOfSequencesOverTimeTableData.ts +1 -4
  54. package/src/preact/numberSequencesOverTime/number-sequences-over-time.tsx +0 -5
  55. package/src/preact/prevalenceOverTime/prevalence-over-time-bar-chart.tsx +1 -1
  56. package/src/preact/prevalenceOverTime/prevalence-over-time-bubble-chart.tsx +1 -1
  57. package/src/preact/prevalenceOverTime/prevalence-over-time-line-chart.tsx +1 -1
  58. package/src/preact/prevalenceOverTime/prevalence-over-time.tsx +1 -1
  59. package/src/preact/relativeGrowthAdvantage/relative-growth-advantage-chart.tsx +5 -5
  60. package/src/preact/relativeGrowthAdvantage/relative-growth-advantage.tsx +1 -4
  61. package/src/preact/sequencesByLocation/loadMapSource.tsx +5 -2
  62. package/src/preact/shared/aspectRatio/AspectRatio.tsx +1 -1
  63. package/src/preact/shared/floating-ui/hooks.ts +2 -2
  64. package/src/preact/shared/sort/sortMutationPositions.ts +2 -2
  65. package/src/preact/shared/tanstackTable/pagination.tsx +2 -2
  66. package/src/preact/shared/tanstackTable/tanstackTable.tsx +1 -1
  67. package/src/preact/statistic/statistics.tsx +0 -5
  68. package/src/preact/textFilter/fetchStringAutocompleteList.ts +1 -10
  69. package/src/preact/textFilter/text-filter.tsx +1 -6
  70. package/src/preact/wastewater/mutationsOverTime/wastewater-mutations-over-time.tsx +1 -1
  71. package/src/preact/webWorkers/useWebWorker.ts +2 -1
  72. package/src/preact/webWorkers/workerFunction.ts +2 -2
  73. package/src/query/computeMapLocationData.ts +1 -1
  74. package/src/query/queryAggregatedDataOverTime.ts +3 -3
  75. package/src/query/queryMutationsOverTime.spec.ts +9 -9
  76. package/src/query/queryMutationsOverTime.ts +121 -37
  77. package/src/query/queryMutationsOverTimeNewEndpoint.spec.ts +935 -0
  78. package/src/query/queryRelativeGrowthAdvantage.ts +5 -9
  79. package/src/query/queryWastewaterMutationsOverTime.ts +1 -1
  80. package/src/types.ts +1 -1
  81. package/src/utils/mutations.ts +10 -10
  82. package/src/utils/type-utils.ts +1 -1
  83. package/src/utils/typeAssertions.spec.ts +1 -1
  84. package/src/web-components/gs-app.spec-d.ts +1 -1
  85. package/src/web-components/gs-app.stories.ts +1 -1
  86. package/src/web-components/input/gs-date-range-filter.tsx +2 -2
  87. package/src/web-components/input/gs-lineage-filter.tsx +2 -2
  88. package/src/web-components/input/gs-location-filter.tsx +3 -3
  89. package/src/web-components/input/gs-mutation-filter.tsx +2 -2
  90. package/src/web-components/input/gs-number-range-filter.spec.ts +1 -1
  91. package/src/web-components/input/gs-text-filter.tsx +2 -2
  92. package/src/web-components/visualization/gs-aggregate.tsx +2 -2
  93. package/src/web-components/visualization/gs-genome-data-viewer.spec-d.ts +1 -1
  94. package/src/web-components/visualization/gs-mutation-comparison.tsx +2 -2
  95. package/src/web-components/visualization/gs-mutations-over-time.spec-d.ts +3 -0
  96. package/src/web-components/visualization/gs-mutations-over-time.stories.ts +3 -0
  97. package/src/web-components/visualization/gs-mutations-over-time.tsx +9 -0
  98. package/src/web-components/visualization/gs-mutations.tsx +2 -2
  99. package/src/web-components/visualization/gs-number-sequences-over-time.tsx +2 -2
  100. package/src/web-components/visualization/gs-prevalence-over-time.tsx +2 -2
  101. package/src/web-components/visualization/gs-relative-growth-advantage.tsx +2 -2
  102. package/src/web-components/visualization/gs-sequences-by-location.tsx +2 -2
  103. package/src/web-components/visualization/gs-statistics.tsx +2 -2
  104. package/standalone-bundle/assets/mutationOverTimeWorker-DRRi3aMG.js.map +1 -0
  105. package/standalone-bundle/dashboard-components.js +4454 -4430
  106. package/standalone-bundle/dashboard-components.js.map +1 -1
  107. package/dist/NumberRangeFilterChangedEvent-B64OQZjX.js.map +0 -1
  108. package/dist/assets/mutationOverTimeWorker-DjH04AQB.js.map +0 -1
  109. package/standalone-bundle/assets/mutationOverTimeWorker-B6bf3R3j.js.map +0 -1
@@ -350,7 +350,7 @@ export declare class LocationFilterComponent extends PreactLitAdapter {
350
350
  /**
351
351
  * The initial value to use for this location filter.
352
352
  */
353
- value: Record<string, string | undefined> | undefined;
353
+ value: Record<string, string | null | undefined> | undefined;
354
354
  /**
355
355
  * Required.
356
356
  *
@@ -753,6 +753,12 @@ export declare class MutationsOverTimeComponent extends PreactLitAdapterWithGrid
753
753
  min: number;
754
754
  max: number;
755
755
  };
756
+ /**
757
+ * Whether to use the mutationsOverTime endpoint from LAPIS.
758
+ * If true, use the endpoint, if false, compute component data as before.
759
+ * Eventually, the new endpoint will become the default.
760
+ */
761
+ useNewEndpoint?: boolean;
756
762
  /**
757
763
  * The number of rows per page, which can be selected by the user.
758
764
  */
@@ -1611,7 +1617,7 @@ declare global {
1611
1617
 
1612
1618
  declare global {
1613
1619
  interface HTMLElementTagNameMap {
1614
- 'gs-prevalence-over-time': PrevalenceOverTimeComponent;
1620
+ 'gs-mutations': MutationsComponent;
1615
1621
  }
1616
1622
  }
1617
1623
 
@@ -1619,7 +1625,7 @@ declare global {
1619
1625
  declare global {
1620
1626
  namespace JSX {
1621
1627
  interface IntrinsicElements {
1622
- 'gs-prevalence-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1628
+ 'gs-mutations': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1623
1629
  }
1624
1630
  }
1625
1631
  }
@@ -1627,7 +1633,7 @@ declare global {
1627
1633
 
1628
1634
  declare global {
1629
1635
  interface HTMLElementTagNameMap {
1630
- 'gs-mutations': MutationsComponent;
1636
+ 'gs-relative-growth-advantage': RelativeGrowthAdvantageComponent;
1631
1637
  }
1632
1638
  }
1633
1639
 
@@ -1635,7 +1641,7 @@ declare global {
1635
1641
  declare global {
1636
1642
  namespace JSX {
1637
1643
  interface IntrinsicElements {
1638
- 'gs-mutations': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1644
+ 'gs-relative-growth-advantage': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1639
1645
  }
1640
1646
  }
1641
1647
  }
@@ -1643,7 +1649,7 @@ declare global {
1643
1649
 
1644
1650
  declare global {
1645
1651
  interface HTMLElementTagNameMap {
1646
- 'gs-relative-growth-advantage': RelativeGrowthAdvantageComponent;
1652
+ 'gs-aggregate': AggregateComponent;
1647
1653
  }
1648
1654
  }
1649
1655
 
@@ -1651,7 +1657,7 @@ declare global {
1651
1657
  declare global {
1652
1658
  namespace JSX {
1653
1659
  interface IntrinsicElements {
1654
- 'gs-relative-growth-advantage': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1660
+ 'gs-aggregate': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1655
1661
  }
1656
1662
  }
1657
1663
  }
@@ -1659,7 +1665,7 @@ declare global {
1659
1665
 
1660
1666
  declare global {
1661
1667
  interface HTMLElementTagNameMap {
1662
- 'gs-aggregate': AggregateComponent;
1668
+ 'gs-prevalence-over-time': PrevalenceOverTimeComponent;
1663
1669
  }
1664
1670
  }
1665
1671
 
@@ -1667,7 +1673,7 @@ declare global {
1667
1673
  declare global {
1668
1674
  namespace JSX {
1669
1675
  interface IntrinsicElements {
1670
- 'gs-aggregate': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1676
+ 'gs-prevalence-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1671
1677
  }
1672
1678
  }
1673
1679
  }
@@ -1675,7 +1681,7 @@ declare global {
1675
1681
 
1676
1682
  declare global {
1677
1683
  interface HTMLElementTagNameMap {
1678
- 'gs-number-sequences-over-time': NumberSequencesOverTimeComponent;
1684
+ 'gs-mutations-over-time': MutationsOverTimeComponent;
1679
1685
  }
1680
1686
  }
1681
1687
 
@@ -1683,7 +1689,7 @@ declare global {
1683
1689
  declare global {
1684
1690
  namespace JSX {
1685
1691
  interface IntrinsicElements {
1686
- 'gs-number-sequences-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1692
+ 'gs-mutations-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1687
1693
  }
1688
1694
  }
1689
1695
  }
@@ -1691,7 +1697,7 @@ declare global {
1691
1697
 
1692
1698
  declare global {
1693
1699
  interface HTMLElementTagNameMap {
1694
- 'gs-mutations-over-time': MutationsOverTimeComponent;
1700
+ 'gs-number-sequences-over-time': NumberSequencesOverTimeComponent;
1695
1701
  }
1696
1702
  }
1697
1703
 
@@ -1699,7 +1705,7 @@ declare global {
1699
1705
  declare global {
1700
1706
  namespace JSX {
1701
1707
  interface IntrinsicElements {
1702
- 'gs-mutations-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1708
+ 'gs-number-sequences-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1703
1709
  }
1704
1710
  }
1705
1711
  }
@@ -1723,7 +1729,7 @@ declare global {
1723
1729
 
1724
1730
  declare global {
1725
1731
  interface HTMLElementTagNameMap {
1726
- 'gs-statistics': StatisticsComponent;
1732
+ 'gs-wastewater-mutations-over-time': WastewaterMutationsOverTimeComponent;
1727
1733
  }
1728
1734
  }
1729
1735
 
@@ -1731,7 +1737,7 @@ declare global {
1731
1737
  declare global {
1732
1738
  namespace JSX {
1733
1739
  interface IntrinsicElements {
1734
- 'gs-statistics': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1740
+ 'gs-wastewater-mutations-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1735
1741
  }
1736
1742
  }
1737
1743
  }
@@ -1739,7 +1745,7 @@ declare global {
1739
1745
 
1740
1746
  declare global {
1741
1747
  interface HTMLElementTagNameMap {
1742
- 'gs-wastewater-mutations-over-time': WastewaterMutationsOverTimeComponent;
1748
+ 'gs-statistics': StatisticsComponent;
1743
1749
  }
1744
1750
  }
1745
1751
 
@@ -1747,7 +1753,7 @@ declare global {
1747
1753
  declare global {
1748
1754
  namespace JSX {
1749
1755
  interface IntrinsicElements {
1750
- 'gs-wastewater-mutations-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1756
+ 'gs-statistics': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1751
1757
  }
1752
1758
  }
1753
1759
  }
@@ -1755,10 +1761,11 @@ declare global {
1755
1761
 
1756
1762
  declare global {
1757
1763
  interface HTMLElementTagNameMap {
1758
- 'gs-location-filter': LocationFilterComponent;
1764
+ 'gs-date-range-filter': DateRangeFilterComponent;
1759
1765
  }
1760
1766
  interface HTMLElementEventMap {
1761
- [gsEventNames.locationChanged]: LocationChangedEvent;
1767
+ [gsEventNames.dateRangeFilterChanged]: CustomEvent<Record<string, string>>;
1768
+ [gsEventNames.dateRangeOptionChanged]: DateRangeOptionChangedEvent;
1762
1769
  }
1763
1770
  }
1764
1771
 
@@ -1766,7 +1773,7 @@ declare global {
1766
1773
  declare global {
1767
1774
  namespace JSX {
1768
1775
  interface IntrinsicElements {
1769
- 'gs-location-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1776
+ 'gs-date-range-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1770
1777
  }
1771
1778
  }
1772
1779
  }
@@ -1774,10 +1781,10 @@ declare global {
1774
1781
 
1775
1782
  declare global {
1776
1783
  interface HTMLElementTagNameMap {
1777
- 'gs-text-filter': TextFilterComponent;
1784
+ 'gs-location-filter': LocationFilterComponent;
1778
1785
  }
1779
1786
  interface HTMLElementEventMap {
1780
- [gsEventNames.textFilterChanged]: TextFilterChangedEvent;
1787
+ [gsEventNames.locationChanged]: LocationChangedEvent;
1781
1788
  }
1782
1789
  }
1783
1790
 
@@ -1785,7 +1792,7 @@ declare global {
1785
1792
  declare global {
1786
1793
  namespace JSX {
1787
1794
  interface IntrinsicElements {
1788
- 'gs-text-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1795
+ 'gs-location-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1789
1796
  }
1790
1797
  }
1791
1798
  }
@@ -1793,11 +1800,10 @@ declare global {
1793
1800
 
1794
1801
  declare global {
1795
1802
  interface HTMLElementTagNameMap {
1796
- 'gs-date-range-filter': DateRangeFilterComponent;
1803
+ 'gs-text-filter': TextFilterComponent;
1797
1804
  }
1798
1805
  interface HTMLElementEventMap {
1799
- [gsEventNames.dateRangeFilterChanged]: CustomEvent<Record<string, string>>;
1800
- [gsEventNames.dateRangeOptionChanged]: DateRangeOptionChangedEvent;
1806
+ [gsEventNames.textFilterChanged]: TextFilterChangedEvent;
1801
1807
  }
1802
1808
  }
1803
1809
 
@@ -1805,7 +1811,7 @@ declare global {
1805
1811
  declare global {
1806
1812
  namespace JSX {
1807
1813
  interface IntrinsicElements {
1808
- 'gs-date-range-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1814
+ 'gs-text-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1809
1815
  }
1810
1816
  }
1811
1817
  }