@genspectrum/dashboard-components 0.6.9 → 0.6.11

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Files changed (27) hide show
  1. package/custom-elements.json +3 -3
  2. package/dist/dashboard-components.js +366 -75
  3. package/dist/dashboard-components.js.map +1 -1
  4. package/dist/genspectrum-components.d.ts +2 -2
  5. package/dist/style.css +65 -1
  6. package/package.json +4 -1
  7. package/src/preact/aggregatedData/aggregate.tsx +14 -4
  8. package/src/preact/components/chart.tsx +14 -1
  9. package/src/preact/components/fullscreen.tsx +57 -0
  10. package/src/preact/components/info.tsx +88 -1
  11. package/src/preact/components/resize-container.tsx +5 -1
  12. package/src/preact/mutationComparison/mutation-comparison.tsx +2 -0
  13. package/src/preact/mutations/mutations.tsx +34 -2
  14. package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutations_byDayOverall.json +4726 -0
  15. package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_byMonthOverall.json +11143 -0
  16. package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_byWeekOverall.json +9154 -0
  17. package/src/preact/mutationsOverTime/getFilteredMutationsOverTime.spec.ts +66 -22
  18. package/src/preact/mutationsOverTime/getFilteredMutationsOverTimeData.ts +16 -7
  19. package/src/preact/mutationsOverTime/mutations-over-time.stories.tsx +17 -0
  20. package/src/preact/mutationsOverTime/mutations-over-time.tsx +28 -4
  21. package/src/preact/numberSequencesOverTime/number-sequences-over-time.tsx +42 -6
  22. package/src/preact/prevalenceOverTime/prevalence-over-time.stories.tsx +2 -1
  23. package/src/preact/prevalenceOverTime/prevalence-over-time.tsx +46 -53
  24. package/src/preact/relativeGrowthAdvantage/relative-growth-advantage.tsx +2 -0
  25. package/src/query/queryMutationsOverTime.ts +10 -1
  26. package/src/web-components/visualization/gs-mutations-over-time.stories.ts +51 -1
  27. package/src/web-components/visualization/gs-prevalence-over-time.tsx +2 -4
@@ -20,6 +20,7 @@ import aminoAcidMutations_23_01_2024 from '../../preact/mutationsOverTime/__mock
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  import aminoAcidMutations_24_01_2024 from '../../preact/mutationsOverTime/__mockData__/aminoAcidMutations_24_01_2024.json';
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  import aminoAcidMutations_25_01_2024 from '../../preact/mutationsOverTime/__mockData__/aminoAcidMutations_25_01_2024.json';
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  import aminoAcidMutations_26_01_2024 from '../../preact/mutationsOverTime/__mockData__/aminoAcidMutations_26_01_2024.json';
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+ import aminoAcidMutations_byDayOverall from '../../preact/mutationsOverTime/__mockData__/aminoAcidMutations_byDayOverall.json';
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  import nucleotideMutation_01 from '../../preact/mutationsOverTime/__mockData__/nucleotideMutations_2024_01.json';
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  import nucleotideMutation_02 from '../../preact/mutationsOverTime/__mockData__/nucleotideMutations_2024_02.json';
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  import nucleotideMutation_03 from '../../preact/mutationsOverTime/__mockData__/nucleotideMutations_2024_03.json';
@@ -27,6 +28,8 @@ import nucleotideMutation_04 from '../../preact/mutationsOverTime/__mockData__/n
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  import nucleotideMutation_05 from '../../preact/mutationsOverTime/__mockData__/nucleotideMutations_2024_05.json';
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  import nucleotideMutation_06 from '../../preact/mutationsOverTime/__mockData__/nucleotideMutations_2024_06.json';
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  import nucleotideMutation_07 from '../../preact/mutationsOverTime/__mockData__/nucleotideMutations_2024_07.json';
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+ import nucleotideMutations_byMonthOverall from '../../preact/mutationsOverTime/__mockData__/nucleotideMutations_byMonthOverall.json';
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+ import nucleotideMutations_byWeekOverall from '../../preact/mutationsOverTime/__mockData__/nucleotideMutations_byWeekOverall.json';
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  import nucleotideMutation_week3 from '../../preact/mutationsOverTime/__mockData__/nucleotideMutations_week3_2024.json';
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  import nucleotideMutation_week4 from '../../preact/mutationsOverTime/__mockData__/nucleotideMutations_week4_2024.json';
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  import nucleotideMutation_week5 from '../../preact/mutationsOverTime/__mockData__/nucleotideMutations_week5_2024.json';
@@ -38,7 +41,6 @@ const codeExample = String.raw`
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  lapisFilter='{ "pangoLineage": "JN.1*", "dateFrom": "2024-01-15", "dateTo": "2024-07-10" }'
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  sequenceType="nucleotide"
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  views='["grid"]'
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- headline="Mutations over time"
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  width='100%'
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  height='700px'
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  granularity="month"
@@ -124,6 +126,22 @@ export const ByMonth: StoryObj<Required<MutationsOverTimeProps>> = {
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  body: aggregated_date,
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  },
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  },
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+ {
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+ matcher: {
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+ name: 'nucleotideMutations_overall',
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+ url: NUCLEOTIDE_MUTATIONS_ENDPOINT,
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+ body: {
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+ pangoLineage: 'JN.1*',
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+ dateFrom: '2024-01-15',
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+ dateTo: '2024-07-10',
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+ minProportion: 0.001,
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+ },
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+ },
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+ response: {
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+ status: 200,
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+ body: nucleotideMutations_byMonthOverall,
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+ },
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+ },
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  {
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  matcher: {
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  name: 'nucleotideMutations_01',
@@ -268,6 +286,22 @@ export const ByWeek: StoryObj<Required<MutationsOverTimeProps>> = {
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  body: aggregated_byWeek,
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  },
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  },
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+ {
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+ matcher: {
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+ name: 'nucleotideMutation_overall',
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+ url: NUCLEOTIDE_MUTATIONS_ENDPOINT,
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+ body: {
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+ pangoLineage: 'JN.1*',
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+ dateFrom: '2024-01-15',
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+ dateTo: '2024-02-11',
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+ minProportion: 0.001,
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+ },
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+ },
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+ response: {
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+ status: 200,
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+ body: nucleotideMutations_byWeekOverall,
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+ },
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+ },
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  {
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  matcher: {
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  name: 'nucleotideMutation_week3',
@@ -359,6 +393,22 @@ export const AminoAcidMutationsByDay: StoryObj<Required<MutationsOverTimeProps>>
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  body: aggregated_byDay,
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  },
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  },
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+ {
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+ matcher: {
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+ name: 'aminoAcidMutations_overall',
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+ url: AMINO_ACID_MUTATIONS_ENDPOINT,
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+ body: {
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+ pangoLineage: 'JN.1*',
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+ dateFrom: '2024-01-20',
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+ dateTo: '2024-01-26',
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+ minProportion: 0.001,
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+ },
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+ },
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+ response: {
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+ status: 200,
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+ body: aminoAcidMutations_byDayOverall,
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+ },
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+ },
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  {
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  matcher: {
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  name: 'aminoAcidMutations_20_01_2024',
@@ -175,10 +175,8 @@ export class PrevalenceOverTimeComponent extends PreactLitAdapterWithGridJsStyle
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  height={this.height}
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  lapisDateField={this.lapisDateField}
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  pageSize={this.pageSize}
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- yAxisMaxConfig={{
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- linear: this.yAxisMaxLinear,
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- logarithmic: this.yAxisMaxLogarithmic,
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- }}
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+ yAxisMaxLinear={this.yAxisMaxLinear}
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+ yAxisMaxLogarithmic={this.yAxisMaxLogarithmic}
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  />
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  );
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  }