@genspectrum/dashboard-components 0.6.18 → 0.6.19
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +5 -12
- package/custom-elements.json +4 -4
- package/dist/assets/mutationOverTimeWorker-BdzqDqvO.js.map +1 -0
- package/dist/dashboard-components.js +216 -214
- package/dist/dashboard-components.js.map +1 -1
- package/dist/genspectrum-components.d.ts +40 -40
- package/dist/style.css +3 -2
- package/package.json +13 -2
- package/src/operator/FetchInsertionsOperator.ts +2 -2
- package/src/operator/FetchSubstitutionsOrDeletionsOperator.ts +3 -3
- package/src/preact/mutationComparison/fetchMutationData.spec.ts +3 -3
- package/src/preact/mutationComparison/getMutationComparisonTableData.spec.ts +11 -11
- package/src/preact/mutationComparison/getMutationComparisonTableData.ts +4 -4
- package/src/preact/mutationComparison/mutation-comparison-table.tsx +2 -2
- package/src/preact/mutationFilter/mutation-filter.tsx +27 -18
- package/src/preact/mutationFilter/parseAndValidateMutation.ts +4 -4
- package/src/preact/mutationFilter/parseMutation.spec.ts +17 -17
- package/src/preact/mutations/getInsertionsTableData.spec.ts +3 -3
- package/src/preact/mutations/getMutationsGridData.spec.ts +9 -9
- package/src/preact/mutations/getMutationsTableData.spec.ts +7 -7
- package/src/preact/mutations/mutations-insertions-table.tsx +3 -3
- package/src/preact/mutations/mutations-table.tsx +3 -3
- package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutationsByDay.ts +45686 -0
- package/src/preact/mutationsOverTime/__mockData__/byWeek.ts +58989 -0
- package/src/preact/mutationsOverTime/__mockData__/defaultMockData.ts +103991 -0
- package/src/preact/mutationsOverTime/__mockData__/mockConversion.ts +54 -0
- package/src/preact/mutationsOverTime/__mockData__/showsMessageWhenTooManyMutations.ts +63690 -0
- package/src/preact/mutationsOverTime/getFilteredMutationsOverTime.spec.ts +176 -159
- package/src/preact/mutationsOverTime/getFilteredMutationsOverTimeData.ts +17 -59
- package/src/preact/mutationsOverTime/mutationOverTimeWorker.mock.ts +27 -0
- package/src/preact/mutationsOverTime/mutationOverTimeWorker.ts +29 -0
- package/src/preact/mutationsOverTime/mutations-over-time-grid.tsx +13 -14
- package/src/preact/mutationsOverTime/mutations-over-time.stories.tsx +9 -334
- package/src/preact/mutationsOverTime/mutations-over-time.tsx +68 -52
- package/src/preact/numberSequencesOverTime/getNumberOfSequencesOverTimeTableData.ts +3 -3
- package/src/preact/prevalenceOverTime/getPrevalenceOverTimeTableData.spec.ts +5 -5
- package/src/preact/prevalenceOverTime/prevalence-over-time-bubble-chart.tsx +1 -1
- package/src/preact/relativeGrowthAdvantage/relative-growth-advantage-chart.tsx +2 -2
- package/src/preact/shared/sort/sortInsertions.spec.ts +11 -11
- package/src/preact/shared/sort/sortInsertions.ts +2 -2
- package/src/preact/shared/sort/sortSubstitutionsAndDeletions.spec.ts +13 -13
- package/src/preact/shared/sort/sortSubstitutionsAndDeletions.ts +7 -4
- package/src/preact/webWorkers/useWebWorker.ts +51 -0
- package/src/preact/webWorkers/workerFunction.ts +14 -0
- package/src/query/queryAggregatedDataOverTime.ts +3 -3
- package/src/query/queryMutationsOverTime.spec.ts +272 -51
- package/src/query/queryMutationsOverTime.ts +114 -45
- package/src/query/queryPrevalenceOverTime.ts +2 -2
- package/src/query/queryRelativeGrowthAdvantage.ts +3 -3
- package/src/types.ts +25 -5
- package/src/utils/map2d.spec.ts +29 -1
- package/src/utils/map2d.ts +22 -1
- package/src/utils/mutations.spec.ts +20 -20
- package/src/utils/mutations.ts +80 -17
- package/src/utils/sort.ts +5 -2
- package/src/utils/temporal.spec.ts +27 -24
- package/src/utils/{temporal.ts → temporalClass.ts} +170 -72
- package/src/utils/temporalTestHelpers.ts +3 -3
- package/src/web-components/introduction.mdx +46 -0
- package/src/web-components/visualization/gs-mutations-over-time.stories.ts +6 -699
- package/src/web-components/visualization/gs-mutations-over-time.tsx +2 -2
- package/standalone-bundle/dashboard-components.js +13763 -13754
- package/standalone-bundle/dashboard-components.js.map +1 -1
- package/src/preact/mutationsOverTime/__mockData__/aggregated_2024_01.json +0 -13
- package/src/preact/mutationsOverTime/__mockData__/aggregated_2024_02.json +0 -13
- package/src/preact/mutationsOverTime/__mockData__/aggregated_2024_03.json +0 -13
- package/src/preact/mutationsOverTime/__mockData__/aggregated_2024_04.json +0 -13
- package/src/preact/mutationsOverTime/__mockData__/aggregated_2024_05.json +0 -13
- package/src/preact/mutationsOverTime/__mockData__/aggregated_2024_06.json +0 -13
- package/src/preact/mutationsOverTime/__mockData__/aggregated_2024_07.json +0 -13
- package/src/preact/mutationsOverTime/__mockData__/aggregated_20_01_2024.json +0 -13
- package/src/preact/mutationsOverTime/__mockData__/aggregated_21_01_2024.json +0 -13
- package/src/preact/mutationsOverTime/__mockData__/aggregated_22_01_2024.json +0 -13
- package/src/preact/mutationsOverTime/__mockData__/aggregated_23_01_2024.json +0 -13
- package/src/preact/mutationsOverTime/__mockData__/aggregated_24_01_2024.json +0 -13
- package/src/preact/mutationsOverTime/__mockData__/aggregated_25_01_2024.json +0 -13
- package/src/preact/mutationsOverTime/__mockData__/aggregated_26_01_2024.json +0 -13
- package/src/preact/mutationsOverTime/__mockData__/aggregated_byDay.json +0 -38
- package/src/preact/mutationsOverTime/__mockData__/aggregated_byWeek.json +0 -122
- package/src/preact/mutationsOverTime/__mockData__/aggregated_date.json +0 -642
- package/src/preact/mutationsOverTime/__mockData__/aggregated_tooManyMutations.json +0 -1470
- package/src/preact/mutationsOverTime/__mockData__/aggregated_tooManyMutations_total.json +0 -13
- package/src/preact/mutationsOverTime/__mockData__/aggregated_week3_2024.json +0 -13
- package/src/preact/mutationsOverTime/__mockData__/aggregated_week4_2024.json +0 -13
- package/src/preact/mutationsOverTime/__mockData__/aggregated_week5_2024.json +0 -13
- package/src/preact/mutationsOverTime/__mockData__/aggregated_week6_2024.json +0 -13
- package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutations_20_01_2024.json +0 -6778
- package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutations_21_01_2024.json +0 -7129
- package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutations_22_01_2024.json +0 -4681
- package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutations_23_01_2024.json +0 -10738
- package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutations_24_01_2024.json +0 -11710
- package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutations_25_01_2024.json +0 -11557
- package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutations_26_01_2024.json +0 -8596
- package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutations_byDayOverall.json +0 -4726
- package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_2024_01.json +0 -1747
- package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_2024_02.json +0 -1774
- package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_2024_03.json +0 -1819
- package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_2024_04.json +0 -1864
- package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_2024_05.json +0 -1927
- package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_2024_06.json +0 -1864
- package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_2024_07.json +0 -9
- package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_byMonthOverall.json +0 -11143
- package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_byWeekOverall.json +0 -9154
- package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_tooManyMutations.json +0 -16453
- package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_week3_2024.json +0 -8812
- package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_week4_2024.json +0 -9730
- package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_week5_2024.json +0 -9865
- package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_week6_2024.json +0 -11314
|
@@ -0,0 +1,54 @@
|
|
|
1
|
+
import type { MutationOverTimeMutationValue, MutationOverTimeQuery } from '../../../query/queryMutationsOverTime';
|
|
2
|
+
import type { SubstitutionOrDeletionEntry } from '../../../types';
|
|
3
|
+
import type { Deletion, Substitution } from '../../../utils/mutations';
|
|
4
|
+
import type { Temporal } from '../../../utils/temporalClass';
|
|
5
|
+
|
|
6
|
+
export type MutationOverTimeMockData = {
|
|
7
|
+
query: MutationOverTimeQuery;
|
|
8
|
+
response: {
|
|
9
|
+
overallMutationData: SubstitutionOrDeletionEntry<Substitution, Deletion>[];
|
|
10
|
+
mutationOverTimeSerializedAsArray: {
|
|
11
|
+
keysFirstAxis: [string, Substitution | Deletion][];
|
|
12
|
+
keysSecondAxis: [string, Temporal][];
|
|
13
|
+
data: [string, [string, MutationOverTimeMutationValue][]][];
|
|
14
|
+
};
|
|
15
|
+
};
|
|
16
|
+
};
|
|
17
|
+
|
|
18
|
+
export function getMutationOverTimeMock(mockData: MutationOverTimeMockData) {
|
|
19
|
+
return {
|
|
20
|
+
query: mockData.query,
|
|
21
|
+
response: {
|
|
22
|
+
overallMutationData: mockData.response.overallMutationData,
|
|
23
|
+
mutationOverTimeSerialized: get2dMapFromArray({
|
|
24
|
+
...mockData.response.mutationOverTimeSerializedAsArray,
|
|
25
|
+
}),
|
|
26
|
+
},
|
|
27
|
+
};
|
|
28
|
+
}
|
|
29
|
+
|
|
30
|
+
function get2dMapFromArray({
|
|
31
|
+
keysFirstAxis,
|
|
32
|
+
keysSecondAxis,
|
|
33
|
+
data,
|
|
34
|
+
}: {
|
|
35
|
+
keysFirstAxis: [string, Substitution | Deletion][];
|
|
36
|
+
keysSecondAxis: [string, Temporal][];
|
|
37
|
+
data: [string, [string, MutationOverTimeMutationValue][]][];
|
|
38
|
+
}) {
|
|
39
|
+
const keysFirstAxisMap = new Map<string, Substitution | Deletion>(keysFirstAxis);
|
|
40
|
+
const keysSecondAxisMap = new Map<string, Temporal>(keysSecondAxis);
|
|
41
|
+
|
|
42
|
+
const dataMapArrays = data.map(([keyFirstAxis, dataMapArray]) => {
|
|
43
|
+
const dataMap = new Map<string, MutationOverTimeMutationValue>(dataMapArray);
|
|
44
|
+
return [keyFirstAxis, dataMap] as [string, Map<string, MutationOverTimeMutationValue>];
|
|
45
|
+
});
|
|
46
|
+
|
|
47
|
+
const dataMap = new Map<string, Map<string, MutationOverTimeMutationValue>>(dataMapArrays);
|
|
48
|
+
|
|
49
|
+
return {
|
|
50
|
+
keysFirstAxis: keysFirstAxisMap,
|
|
51
|
+
keysSecondAxis: keysSecondAxisMap,
|
|
52
|
+
data: dataMap,
|
|
53
|
+
};
|
|
54
|
+
}
|