@genspectrum/dashboard-components 0.6.18 → 0.6.19

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (108) hide show
  1. package/README.md +5 -12
  2. package/custom-elements.json +4 -4
  3. package/dist/assets/mutationOverTimeWorker-BdzqDqvO.js.map +1 -0
  4. package/dist/dashboard-components.js +216 -214
  5. package/dist/dashboard-components.js.map +1 -1
  6. package/dist/genspectrum-components.d.ts +40 -40
  7. package/dist/style.css +3 -2
  8. package/package.json +13 -2
  9. package/src/operator/FetchInsertionsOperator.ts +2 -2
  10. package/src/operator/FetchSubstitutionsOrDeletionsOperator.ts +3 -3
  11. package/src/preact/mutationComparison/fetchMutationData.spec.ts +3 -3
  12. package/src/preact/mutationComparison/getMutationComparisonTableData.spec.ts +11 -11
  13. package/src/preact/mutationComparison/getMutationComparisonTableData.ts +4 -4
  14. package/src/preact/mutationComparison/mutation-comparison-table.tsx +2 -2
  15. package/src/preact/mutationFilter/mutation-filter.tsx +27 -18
  16. package/src/preact/mutationFilter/parseAndValidateMutation.ts +4 -4
  17. package/src/preact/mutationFilter/parseMutation.spec.ts +17 -17
  18. package/src/preact/mutations/getInsertionsTableData.spec.ts +3 -3
  19. package/src/preact/mutations/getMutationsGridData.spec.ts +9 -9
  20. package/src/preact/mutations/getMutationsTableData.spec.ts +7 -7
  21. package/src/preact/mutations/mutations-insertions-table.tsx +3 -3
  22. package/src/preact/mutations/mutations-table.tsx +3 -3
  23. package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutationsByDay.ts +45686 -0
  24. package/src/preact/mutationsOverTime/__mockData__/byWeek.ts +58989 -0
  25. package/src/preact/mutationsOverTime/__mockData__/defaultMockData.ts +103991 -0
  26. package/src/preact/mutationsOverTime/__mockData__/mockConversion.ts +54 -0
  27. package/src/preact/mutationsOverTime/__mockData__/showsMessageWhenTooManyMutations.ts +63690 -0
  28. package/src/preact/mutationsOverTime/getFilteredMutationsOverTime.spec.ts +176 -159
  29. package/src/preact/mutationsOverTime/getFilteredMutationsOverTimeData.ts +17 -59
  30. package/src/preact/mutationsOverTime/mutationOverTimeWorker.mock.ts +27 -0
  31. package/src/preact/mutationsOverTime/mutationOverTimeWorker.ts +29 -0
  32. package/src/preact/mutationsOverTime/mutations-over-time-grid.tsx +13 -14
  33. package/src/preact/mutationsOverTime/mutations-over-time.stories.tsx +9 -334
  34. package/src/preact/mutationsOverTime/mutations-over-time.tsx +68 -52
  35. package/src/preact/numberSequencesOverTime/getNumberOfSequencesOverTimeTableData.ts +3 -3
  36. package/src/preact/prevalenceOverTime/getPrevalenceOverTimeTableData.spec.ts +5 -5
  37. package/src/preact/prevalenceOverTime/prevalence-over-time-bubble-chart.tsx +1 -1
  38. package/src/preact/relativeGrowthAdvantage/relative-growth-advantage-chart.tsx +2 -2
  39. package/src/preact/shared/sort/sortInsertions.spec.ts +11 -11
  40. package/src/preact/shared/sort/sortInsertions.ts +2 -2
  41. package/src/preact/shared/sort/sortSubstitutionsAndDeletions.spec.ts +13 -13
  42. package/src/preact/shared/sort/sortSubstitutionsAndDeletions.ts +7 -4
  43. package/src/preact/webWorkers/useWebWorker.ts +51 -0
  44. package/src/preact/webWorkers/workerFunction.ts +14 -0
  45. package/src/query/queryAggregatedDataOverTime.ts +3 -3
  46. package/src/query/queryMutationsOverTime.spec.ts +272 -51
  47. package/src/query/queryMutationsOverTime.ts +114 -45
  48. package/src/query/queryPrevalenceOverTime.ts +2 -2
  49. package/src/query/queryRelativeGrowthAdvantage.ts +3 -3
  50. package/src/types.ts +25 -5
  51. package/src/utils/map2d.spec.ts +29 -1
  52. package/src/utils/map2d.ts +22 -1
  53. package/src/utils/mutations.spec.ts +20 -20
  54. package/src/utils/mutations.ts +80 -17
  55. package/src/utils/sort.ts +5 -2
  56. package/src/utils/temporal.spec.ts +27 -24
  57. package/src/utils/{temporal.ts → temporalClass.ts} +170 -72
  58. package/src/utils/temporalTestHelpers.ts +3 -3
  59. package/src/web-components/introduction.mdx +46 -0
  60. package/src/web-components/visualization/gs-mutations-over-time.stories.ts +6 -699
  61. package/src/web-components/visualization/gs-mutations-over-time.tsx +2 -2
  62. package/standalone-bundle/dashboard-components.js +13763 -13754
  63. package/standalone-bundle/dashboard-components.js.map +1 -1
  64. package/src/preact/mutationsOverTime/__mockData__/aggregated_2024_01.json +0 -13
  65. package/src/preact/mutationsOverTime/__mockData__/aggregated_2024_02.json +0 -13
  66. package/src/preact/mutationsOverTime/__mockData__/aggregated_2024_03.json +0 -13
  67. package/src/preact/mutationsOverTime/__mockData__/aggregated_2024_04.json +0 -13
  68. package/src/preact/mutationsOverTime/__mockData__/aggregated_2024_05.json +0 -13
  69. package/src/preact/mutationsOverTime/__mockData__/aggregated_2024_06.json +0 -13
  70. package/src/preact/mutationsOverTime/__mockData__/aggregated_2024_07.json +0 -13
  71. package/src/preact/mutationsOverTime/__mockData__/aggregated_20_01_2024.json +0 -13
  72. package/src/preact/mutationsOverTime/__mockData__/aggregated_21_01_2024.json +0 -13
  73. package/src/preact/mutationsOverTime/__mockData__/aggregated_22_01_2024.json +0 -13
  74. package/src/preact/mutationsOverTime/__mockData__/aggregated_23_01_2024.json +0 -13
  75. package/src/preact/mutationsOverTime/__mockData__/aggregated_24_01_2024.json +0 -13
  76. package/src/preact/mutationsOverTime/__mockData__/aggregated_25_01_2024.json +0 -13
  77. package/src/preact/mutationsOverTime/__mockData__/aggregated_26_01_2024.json +0 -13
  78. package/src/preact/mutationsOverTime/__mockData__/aggregated_byDay.json +0 -38
  79. package/src/preact/mutationsOverTime/__mockData__/aggregated_byWeek.json +0 -122
  80. package/src/preact/mutationsOverTime/__mockData__/aggregated_date.json +0 -642
  81. package/src/preact/mutationsOverTime/__mockData__/aggregated_tooManyMutations.json +0 -1470
  82. package/src/preact/mutationsOverTime/__mockData__/aggregated_tooManyMutations_total.json +0 -13
  83. package/src/preact/mutationsOverTime/__mockData__/aggregated_week3_2024.json +0 -13
  84. package/src/preact/mutationsOverTime/__mockData__/aggregated_week4_2024.json +0 -13
  85. package/src/preact/mutationsOverTime/__mockData__/aggregated_week5_2024.json +0 -13
  86. package/src/preact/mutationsOverTime/__mockData__/aggregated_week6_2024.json +0 -13
  87. package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutations_20_01_2024.json +0 -6778
  88. package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutations_21_01_2024.json +0 -7129
  89. package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutations_22_01_2024.json +0 -4681
  90. package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutations_23_01_2024.json +0 -10738
  91. package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutations_24_01_2024.json +0 -11710
  92. package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutations_25_01_2024.json +0 -11557
  93. package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutations_26_01_2024.json +0 -8596
  94. package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutations_byDayOverall.json +0 -4726
  95. package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_2024_01.json +0 -1747
  96. package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_2024_02.json +0 -1774
  97. package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_2024_03.json +0 -1819
  98. package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_2024_04.json +0 -1864
  99. package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_2024_05.json +0 -1927
  100. package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_2024_06.json +0 -1864
  101. package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_2024_07.json +0 -9
  102. package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_byMonthOverall.json +0 -11143
  103. package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_byWeekOverall.json +0 -9154
  104. package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_tooManyMutations.json +0 -16453
  105. package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_week3_2024.json +0 -8812
  106. package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_week4_2024.json +0 -9730
  107. package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_week5_2024.json +0 -9865
  108. package/src/preact/mutationsOverTime/__mockData__/nucleotideMutations_week6_2024.json +0 -11314
@@ -0,0 +1,54 @@
1
+ import type { MutationOverTimeMutationValue, MutationOverTimeQuery } from '../../../query/queryMutationsOverTime';
2
+ import type { SubstitutionOrDeletionEntry } from '../../../types';
3
+ import type { Deletion, Substitution } from '../../../utils/mutations';
4
+ import type { Temporal } from '../../../utils/temporalClass';
5
+
6
+ export type MutationOverTimeMockData = {
7
+ query: MutationOverTimeQuery;
8
+ response: {
9
+ overallMutationData: SubstitutionOrDeletionEntry<Substitution, Deletion>[];
10
+ mutationOverTimeSerializedAsArray: {
11
+ keysFirstAxis: [string, Substitution | Deletion][];
12
+ keysSecondAxis: [string, Temporal][];
13
+ data: [string, [string, MutationOverTimeMutationValue][]][];
14
+ };
15
+ };
16
+ };
17
+
18
+ export function getMutationOverTimeMock(mockData: MutationOverTimeMockData) {
19
+ return {
20
+ query: mockData.query,
21
+ response: {
22
+ overallMutationData: mockData.response.overallMutationData,
23
+ mutationOverTimeSerialized: get2dMapFromArray({
24
+ ...mockData.response.mutationOverTimeSerializedAsArray,
25
+ }),
26
+ },
27
+ };
28
+ }
29
+
30
+ function get2dMapFromArray({
31
+ keysFirstAxis,
32
+ keysSecondAxis,
33
+ data,
34
+ }: {
35
+ keysFirstAxis: [string, Substitution | Deletion][];
36
+ keysSecondAxis: [string, Temporal][];
37
+ data: [string, [string, MutationOverTimeMutationValue][]][];
38
+ }) {
39
+ const keysFirstAxisMap = new Map<string, Substitution | Deletion>(keysFirstAxis);
40
+ const keysSecondAxisMap = new Map<string, Temporal>(keysSecondAxis);
41
+
42
+ const dataMapArrays = data.map(([keyFirstAxis, dataMapArray]) => {
43
+ const dataMap = new Map<string, MutationOverTimeMutationValue>(dataMapArray);
44
+ return [keyFirstAxis, dataMap] as [string, Map<string, MutationOverTimeMutationValue>];
45
+ });
46
+
47
+ const dataMap = new Map<string, Map<string, MutationOverTimeMutationValue>>(dataMapArrays);
48
+
49
+ return {
50
+ keysFirstAxis: keysFirstAxisMap,
51
+ keysSecondAxis: keysSecondAxisMap,
52
+ data: dataMap,
53
+ };
54
+ }