@genspectrum/dashboard-components 0.2.0 → 0.3.1

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Files changed (59) hide show
  1. package/custom-elements.json +330 -179
  2. package/dist/dashboard-components.js +379 -187
  3. package/dist/dashboard-components.js.map +1 -1
  4. package/dist/genspectrum-components.d.ts +160 -114
  5. package/dist/style.css +171 -71
  6. package/package.json +1 -2
  7. package/src/constants.ts +1 -1
  8. package/src/lapisApi/lapisApi.ts +46 -2
  9. package/src/lapisApi/lapisTypes.ts +14 -0
  10. package/src/preact/aggregatedData/aggregate.stories.tsx +4 -2
  11. package/src/preact/aggregatedData/aggregate.tsx +8 -6
  12. package/src/preact/components/error-boundary.stories.tsx +6 -14
  13. package/src/preact/components/error-boundary.tsx +2 -11
  14. package/src/preact/components/error-display.stories.tsx +12 -5
  15. package/src/preact/components/error-display.tsx +37 -3
  16. package/src/preact/components/loading-display.stories.tsx +1 -1
  17. package/src/preact/components/resize-container.tsx +5 -14
  18. package/src/preact/dateRangeSelector/date-range-selector.stories.tsx +2 -0
  19. package/src/preact/dateRangeSelector/date-range-selector.tsx +11 -8
  20. package/src/preact/locationFilter/fetchAutocompletionList.ts +15 -1
  21. package/src/preact/locationFilter/location-filter.stories.tsx +1 -1
  22. package/src/preact/locationFilter/location-filter.tsx +16 -30
  23. package/src/preact/mutationComparison/mutation-comparison.stories.tsx +6 -3
  24. package/src/preact/mutationComparison/mutation-comparison.tsx +10 -13
  25. package/src/preact/mutationComparison/queryMutationData.ts +2 -3
  26. package/src/preact/mutationFilter/mutation-filter.stories.tsx +8 -8
  27. package/src/preact/mutationFilter/mutation-filter.tsx +7 -6
  28. package/src/preact/mutations/mutations.stories.tsx +6 -3
  29. package/src/preact/mutations/mutations.tsx +8 -6
  30. package/src/preact/prevalenceOverTime/prevalence-over-time.stories.tsx +14 -7
  31. package/src/preact/prevalenceOverTime/prevalence-over-time.tsx +10 -8
  32. package/src/preact/relativeGrowthAdvantage/relative-growth-advantage.stories.tsx +6 -3
  33. package/src/preact/relativeGrowthAdvantage/relative-growth-advantage.tsx +9 -7
  34. package/src/preact/textInput/text-input.stories.tsx +26 -0
  35. package/src/preact/textInput/text-input.tsx +4 -5
  36. package/src/query/queryPrevalenceOverTime.ts +4 -10
  37. package/src/types.ts +4 -1
  38. package/src/web-components/ResizeContainer.mdx +13 -0
  39. package/src/web-components/app.ts +3 -1
  40. package/src/web-components/input/gs-date-range-selector.stories.ts +10 -2
  41. package/src/web-components/input/gs-date-range-selector.tsx +26 -16
  42. package/src/web-components/input/gs-location-filter.stories.ts +5 -7
  43. package/src/web-components/input/gs-location-filter.tsx +6 -7
  44. package/src/web-components/input/gs-mutation-filter.stories.ts +11 -8
  45. package/src/web-components/input/gs-mutation-filter.tsx +38 -26
  46. package/src/web-components/input/gs-text-input.stories.ts +3 -3
  47. package/src/web-components/input/gs-text-input.tsx +10 -10
  48. package/src/web-components/input/introduction.mdx +11 -0
  49. package/src/web-components/introduction.mdx +15 -0
  50. package/src/web-components/visualization/gs-aggregate.stories.ts +19 -6
  51. package/src/web-components/visualization/gs-aggregate.tsx +31 -15
  52. package/src/web-components/visualization/gs-mutation-comparison.stories.ts +13 -7
  53. package/src/web-components/visualization/gs-mutation-comparison.tsx +26 -17
  54. package/src/web-components/visualization/gs-mutations.stories.ts +14 -8
  55. package/src/web-components/visualization/gs-mutations.tsx +18 -8
  56. package/src/web-components/visualization/gs-prevalence-over-time.stories.ts +28 -18
  57. package/src/web-components/visualization/gs-prevalence-over-time.tsx +45 -22
  58. package/src/web-components/visualization/gs-relative-growth-advantage.stories.ts +11 -5
  59. package/src/web-components/visualization/gs-relative-growth-advantage.tsx +21 -9
@@ -14,7 +14,7 @@ import Headline from '../components/headline';
14
14
  import Info, { InfoHeadline1, InfoHeadline2, InfoLink, InfoParagraph } from '../components/info';
15
15
  import { LoadingDisplay } from '../components/loading-display';
16
16
  import { NoDataDisplay } from '../components/no-data-display';
17
- import { ResizeContainer, type Size } from '../components/resize-container';
17
+ import { ResizeContainer } from '../components/resize-container';
18
18
  import { ScalingSelector } from '../components/scaling-selector';
19
19
  import Tabs from '../components/tabs';
20
20
  import { type ScaleType } from '../shared/charts/getYAxisScale';
@@ -23,7 +23,8 @@ import { useQuery } from '../useQuery';
23
23
  export type View = 'line';
24
24
 
25
25
  export interface RelativeGrowthAdvantageProps extends RelativeGrowthAdvantagePropsInner {
26
- size?: Size;
26
+ width: string;
27
+ height: string;
27
28
  headline?: string;
28
29
  }
29
30
 
@@ -36,17 +37,18 @@ export interface RelativeGrowthAdvantagePropsInner {
36
37
 
37
38
  export const RelativeGrowthAdvantage: FunctionComponent<RelativeGrowthAdvantageProps> = ({
38
39
  views,
39
- size,
40
+ width,
41
+ height,
40
42
  numerator,
41
43
  denominator,
42
44
  generationTime,
43
45
  headline = 'Relative growth advantage',
44
46
  }) => {
45
- const defaultSize = { height: '600px', width: '100%' };
47
+ const size = { height, width };
46
48
 
47
49
  return (
48
- <ErrorBoundary size={size} defaultSize={defaultSize} headline={headline}>
49
- <ResizeContainer size={size} defaultSize={defaultSize}>
50
+ <ErrorBoundary size={size} headline={headline}>
51
+ <ResizeContainer size={size}>
50
52
  <Headline heading={headline}>
51
53
  <RelativeGrowthAdvantageInner
52
54
  views={views}
@@ -60,7 +62,7 @@ export const RelativeGrowthAdvantage: FunctionComponent<RelativeGrowthAdvantageP
60
62
  );
61
63
  };
62
64
 
63
- export const RelativeGrowthAdvantageInner: FunctionComponent<RelativeGrowthAdvantageProps> = ({
65
+ export const RelativeGrowthAdvantageInner: FunctionComponent<RelativeGrowthAdvantagePropsInner> = ({
64
66
  numerator,
65
67
  denominator,
66
68
  generationTime,
@@ -33,6 +33,29 @@ const meta: Meta<TextInputProps> = {
33
33
  },
34
34
  },
35
35
  decorators: [withActions],
36
+ argTypes: {
37
+ lapisField: {
38
+ control: {
39
+ type: 'select',
40
+ },
41
+ options: ['host'],
42
+ },
43
+ placeholderText: {
44
+ control: {
45
+ type: 'text',
46
+ },
47
+ },
48
+ initialValue: {
49
+ control: {
50
+ type: 'text',
51
+ },
52
+ },
53
+ width: {
54
+ control: {
55
+ type: 'text',
56
+ },
57
+ },
58
+ },
36
59
  };
37
60
 
38
61
  export default meta;
@@ -44,12 +67,15 @@ export const Default: StoryObj<TextInputProps> = {
44
67
  lapisField={args.lapisField}
45
68
  placeholderText={args.placeholderText}
46
69
  initialValue={args.initialValue}
70
+ width={args.width}
47
71
  />
48
72
  </LapisUrlContext.Provider>
49
73
  ),
50
74
  args: {
51
75
  lapisField: 'host',
52
76
  placeholderText: 'Enter a host name',
77
+ initialValue: '',
78
+ width: '100%',
53
79
  },
54
80
  };
55
81
 
@@ -17,16 +17,15 @@ export interface TextInputInnerProps {
17
17
  }
18
18
 
19
19
  export interface TextInputProps extends TextInputInnerProps {
20
- width?: string;
20
+ width: string;
21
21
  }
22
22
 
23
23
  export const TextInput: FunctionComponent<TextInputProps> = ({ width, lapisField, placeholderText, initialValue }) => {
24
- const defaultSize = { width: '100%', height: '3rem' };
25
- const size = width === undefined ? undefined : { width, height: defaultSize.height };
24
+ const size = { width, height: '3rem' };
26
25
 
27
26
  return (
28
- <ErrorBoundary defaultSize={defaultSize} size={size}>
29
- <ResizeContainer size={size} defaultSize={defaultSize}>
27
+ <ErrorBoundary size={size}>
28
+ <ResizeContainer size={size}>
30
29
  <TextInputInner lapisField={lapisField} placeholderText={placeholderText} initialValue={initialValue} />
31
30
  </ResizeContainer>
32
31
  </ErrorBoundary>
@@ -23,7 +23,7 @@ export type PrevalenceOverTimeVariantData = {
23
23
 
24
24
  export function queryPrevalenceOverTime(
25
25
  numeratorFilter: NamedLapisFilter | NamedLapisFilter[],
26
- denominatorFilter: NamedLapisFilter,
26
+ denominatorFilter: LapisFilter,
27
27
  granularity: TemporalGranularity,
28
28
  smoothingWindow: number,
29
29
  lapis: string,
@@ -31,10 +31,10 @@ export function queryPrevalenceOverTime(
31
31
  ): Promise<PrevalenceOverTimeData> {
32
32
  const numeratorFilters = makeArray(numeratorFilter);
33
33
 
34
- const denominatorData = fetchAndPrepare(getFilter(denominatorFilter), granularity, smoothingWindow);
34
+ const denominatorData = fetchAndPrepare(denominatorFilter, granularity, smoothingWindow);
35
35
  const subQueries = numeratorFilters.map(async (namedLapisFilter) => {
36
- const { displayName, ...filter } = namedLapisFilter;
37
- const numeratorData = fetchAndPrepare(filter, granularity, smoothingWindow);
36
+ const { displayName, lapisFilter } = namedLapisFilter;
37
+ const numeratorData = fetchAndPrepare(lapisFilter, granularity, smoothingWindow);
38
38
  const divide = new DivisionOperator(
39
39
  numeratorData,
40
40
  denominatorData,
@@ -53,12 +53,6 @@ export function queryPrevalenceOverTime(
53
53
  return Promise.all(subQueries);
54
54
  }
55
55
 
56
- function getFilter(filter: NamedLapisFilter) {
57
- // eslint-disable-next-line @typescript-eslint/no-unused-vars
58
- const { displayName, ...filterWithoutDisplayName } = filter;
59
- return filterWithoutDisplayName;
60
- }
61
-
62
56
  function makeArray<T>(arrayOrSingleItem: T | T[]) {
63
57
  if (Array.isArray(arrayOrSingleItem)) {
64
58
  return arrayOrSingleItem;
package/src/types.ts CHANGED
@@ -2,7 +2,10 @@ import { type Deletion, type Insertion, type Substitution } from './utils/mutati
2
2
 
3
3
  export type LapisFilter = Record<string, string | number | null | boolean>;
4
4
 
5
- export type NamedLapisFilter = LapisFilter & { displayName: string };
5
+ export type NamedLapisFilter = {
6
+ lapisFilter: LapisFilter;
7
+ displayName: string;
8
+ };
6
9
 
7
10
  export type TemporalGranularity = 'day' | 'week' | 'month' | 'year';
8
11
 
@@ -0,0 +1,13 @@
1
+ import { Meta } from '@storybook/blocks';
2
+
3
+ <Meta title='Components/Size of components' />
4
+
5
+ # Size of components
6
+
7
+ All visualization and input components can be provided with a width prop (or height, when applicable) to control the size of the component.
8
+ If not provided, the default width or height is used. In most cases, the default is a width of '100%' of its parent container and a predefined height.
9
+
10
+ Both width and height can be set using the css units (e.g. 'px', 'em', 'rem', '%', 'vh', 'vw', etc.).
11
+ By using '%', the size of the component can be controlled by the parent component.
12
+
13
+ Caution: When using '%' as a unit, the parent component should have a defined width or height.
@@ -27,6 +27,8 @@ import { fetchReferenceGenome } from '../lapisApi/lapisApi';
27
27
  @customElement('gs-app')
28
28
  export class App extends LitElement {
29
29
  /**
30
+ * Required.
31
+ *
30
32
  * The URL of the LAPIS instance that all children of this component will use.
31
33
  */
32
34
  @provide({ context: lapisContext })
@@ -54,7 +56,7 @@ export class App extends LitElement {
54
56
 
55
57
  override render() {
56
58
  return this.updateReferenceGenome.render({
57
- complete: () => html` <slot></slot>`,
59
+ complete: () => html``, // Children will be rendered in the light DOM anyway. We can't use slots without a shadow DOM.
58
60
  error: () =>
59
61
  html` <div class="m-2 w-full alert alert-error">
60
62
  Error: Cannot fetch reference genome. Is LAPIS available?
@@ -26,9 +26,10 @@ const codeExample = String.raw`
26
26
  earliestDate="1970-01-01"
27
27
  initialValue="${PRESET_VALUE_LAST_6_MONTHS}"
28
28
  width="100%"
29
+ dateColumn="myDateColumn"
29
30
  ></gs-date-range-selector>`;
30
31
 
31
- const meta: Meta<DateRangeSelectorProps<'CustomDateRange'>> = {
32
+ const meta: Meta<Required<DateRangeSelectorProps<'CustomDateRange'>>> = {
32
33
  title: 'Input/DateRangeSelector',
33
34
  component: 'gs-date-range-selector',
34
35
  parameters: withComponentDocs({
@@ -58,6 +59,7 @@ const meta: Meta<DateRangeSelectorProps<'CustomDateRange'>> = {
58
59
  'CustomDateRange',
59
60
  ],
60
61
  },
62
+ dateColumn: { control: { type: 'text' } },
61
63
  customSelectOptions: {
62
64
  control: {
63
65
  type: 'object',
@@ -78,6 +80,7 @@ const meta: Meta<DateRangeSelectorProps<'CustomDateRange'>> = {
78
80
  customSelectOptions: [{ label: 'CustomDateRange', dateFrom: '2021-01-01', dateTo: '2021-12-31' }],
79
81
  earliestDate: '1970-01-01',
80
82
  initialValue: PRESET_VALUE_LAST_6_MONTHS,
83
+ dateColumn: 'aDateColumn',
81
84
  width: '100%',
82
85
  },
83
86
  decorators: [withActions],
@@ -86,7 +89,7 @@ const meta: Meta<DateRangeSelectorProps<'CustomDateRange'>> = {
86
89
 
87
90
  export default meta;
88
91
 
89
- export const DateRangeSelectorStory: StoryObj<DateRangeSelectorProps<'CustomDateRange'>> = {
92
+ export const DateRangeSelectorStory: StoryObj<Required<DateRangeSelectorProps<'CustomDateRange'>>> = {
90
93
  render: (args) =>
91
94
  html` <gs-app lapis="${LAPIS_URL}">
92
95
  <div class="max-w-screen-lg">
@@ -95,6 +98,7 @@ export const DateRangeSelectorStory: StoryObj<DateRangeSelectorProps<'CustomDate
95
98
  .earliestDate=${args.earliestDate}
96
99
  .initialValue=${args.initialValue}
97
100
  .width=${args.width}
101
+ .dateColumn=${args.dateColumn}
98
102
  ></gs-date-range-selector>
99
103
  </div>
100
104
  </gs-app>`,
@@ -108,5 +112,9 @@ export const DateRangeSelectorStory: StoryObj<DateRangeSelectorProps<'CustomDate
108
112
  expect(dateTo()).toHaveValue(toYYYYMMDD(new Date()));
109
113
  });
110
114
  });
115
+
116
+ // Due to the limitations of storybook testing which does not fire an event,
117
+ // when selecting a value from the dropdown we can't test the fired event here.
118
+ // An e2e test (using playwright) for that can be found in tests/dateRangeSelector.spec.ts
111
119
  },
112
120
  };
@@ -10,7 +10,8 @@ import { PreactLitAdapter } from '../PreactLitAdapter';
10
10
 
11
11
  /**
12
12
  * ## Context
13
- * This component is a group of input fields designed to specify a date range. It consists of 3 fields:
13
+ * This component is a group of input fields designed to specify date range filters
14
+ * for a given date column of this Lapis instance. It consists of 3 fields:
14
15
  *
15
16
  * - a select field to choose a predefined date range,
16
17
  * - an input field with an attached date picker for the start date,
@@ -20,12 +21,21 @@ import { PreactLitAdapter } from '../PreactLitAdapter';
20
21
  * Setting a value in either of the date pickers will set the select field to "custom",
21
22
  * which represents an arbitrary date range.
22
23
  *
23
- * @fires {CustomEvent<{ dateFrom: string; dateTo: string; }>} gs-date-range-changed
24
+ * @fires {CustomEvent<{ `${dateColumn}From`: string; `${dateColumn}To`: string; }>} gs-date-range-changed
24
25
  * Fired when:
25
26
  * - The select field is changed,
26
27
  * - A date is selected in either of the date pickers,
27
28
  * - A date was typed into either of the date input fields, and the input field loses focus ("on blur").
28
29
  * Contains the dates in the format `YYYY-MM-DD`.
30
+ *
31
+ * Example: For `dateColumn = yourDate`, an event with `detail` containing
32
+ * ```
33
+ * {
34
+ * yourDataFrom: "2021-01-01",
35
+ * yourDataTo: "2021-12-31"
36
+ * }
37
+ * ```
38
+ * will be fired.
29
39
  */
30
40
  @customElement('gs-date-range-selector')
31
41
  export class DateRangeSelectorComponent extends PreactLitAdapter {
@@ -42,7 +52,7 @@ export class DateRangeSelectorComponent extends PreactLitAdapter {
42
52
  * The `dateFrom` value to use in the `allTimes` preset in the format `YYYY-MM-DD`.
43
53
  */
44
54
  @property({ type: String })
45
- earliestDate: string | undefined = '1900-01-01';
55
+ earliestDate: string = '1900-01-01';
46
56
 
47
57
  // prettier-ignore
48
58
  // The multiline union type must not start with `| 'custom'` - Storybook will list "" as the first type which is wrong
@@ -61,19 +71,21 @@ export class DateRangeSelectorComponent extends PreactLitAdapter {
61
71
  | 'last2Months'
62
72
  | 'last3Months'
63
73
  | 'last6Months'
64
- | string
65
- | undefined = 'last6Months';
74
+ | string = 'last6Months';
66
75
 
67
76
  /**
68
77
  * The width of the component.
69
78
  *
70
- * If not set, the component will take the full width of its container.
71
- *
72
- * The width should be a string with a unit in css style, e.g. '100%', '500px' or '50vw'.
73
- * If the unit is %, the size will be relative to the container of the component.
79
+ * Visit https://genspectrum.github.io/dashboards/?path=/docs/components-size-of-components--docs for more information.
74
80
  */
75
- @property({ type: Object })
76
- width: string | undefined = undefined;
81
+ @property({ type: String })
82
+ width: string = '100%';
83
+
84
+ /**
85
+ * The name of the column in LAPIS that contains the date information.
86
+ */
87
+ @property({ type: String })
88
+ dateColumn: string = 'date';
77
89
 
78
90
  override render() {
79
91
  return (
@@ -81,6 +93,7 @@ export class DateRangeSelectorComponent extends PreactLitAdapter {
81
93
  customSelectOptions={this.customSelectOptions}
82
94
  earliestDate={this.earliestDate}
83
95
  initialValue={this.initialValue}
96
+ dateColumn={this.dateColumn}
84
97
  width={this.width}
85
98
  />
86
99
  );
@@ -93,10 +106,7 @@ declare global {
93
106
  }
94
107
 
95
108
  interface HTMLElementEventMap {
96
- 'gs-date-range-changed': CustomEvent<{
97
- dateFrom: string;
98
- dateTo: string;
99
- }>;
109
+ 'gs-date-range-changed': CustomEvent<Record<string, string>>;
100
110
  }
101
111
  }
102
112
 
@@ -105,6 +115,6 @@ type CustomSelectOptionsMatches = Expect<
105
115
  Equals<typeof DateRangeSelectorComponent.prototype.customSelectOptions, CustomSelectOption<string>[]>
106
116
  >;
107
117
  type InitialValueMatches = Expect<
108
- Equals<typeof DateRangeSelectorComponent.prototype.initialValue, PresetOptionValues | string | undefined>
118
+ Equals<typeof DateRangeSelectorComponent.prototype.initialValue, PresetOptionValues | string>
109
119
  >;
110
120
  /* eslint-enable @typescript-eslint/no-unused-vars, no-unused-vars */
@@ -14,8 +14,8 @@ import { withinShadowRoot } from '../withinShadowRoot.story';
14
14
 
15
15
  const codeExample = String.raw`
16
16
  <gs-location-filter
17
- fields="['region', 'country']"
18
- value='Europe / Switzerland'
17
+ fields='["region", "country"]'
18
+ initialValue='Europe / Switzerland'
19
19
  width="100%"
20
20
  ></gs-location-filter>`;
21
21
 
@@ -134,7 +134,9 @@ export const FetchingLocationsFails: StoryObj<LocationFilterProps> = {
134
134
  matcher: aggregatedEndpointMatcher,
135
135
  response: {
136
136
  status: 400,
137
- body: { error: 'no data' },
137
+ body: {
138
+ error: { status: 400, detail: 'Dummy error message from mock LAPIS', type: 'about:blank' },
139
+ },
138
140
  },
139
141
  },
140
142
  ],
@@ -167,7 +169,6 @@ export const FiresEvent: StoryObj<LocationFilterProps> = {
167
169
  play: async ({ canvasElement, step }) => {
168
170
  const canvas = await withinShadowRoot(canvasElement, 'gs-location-filter');
169
171
 
170
- const submitButton = () => canvas.getByRole('button', { name: 'Submit' });
171
172
  const inputField = () => canvas.getByRole('combobox');
172
173
 
173
174
  const listenerMock = fn();
@@ -183,14 +184,12 @@ export const FiresEvent: StoryObj<LocationFilterProps> = {
183
184
 
184
185
  await step('Input invalid location', async () => {
185
186
  await userEvent.type(inputField(), 'Not / A / Location');
186
- await userEvent.click(submitButton());
187
187
  await expect(listenerMock).not.toHaveBeenCalled();
188
188
  await userEvent.type(inputField(), '{backspace>18/}');
189
189
  });
190
190
 
191
191
  await step('Select Asia', async () => {
192
192
  await userEvent.type(inputField(), 'Asia');
193
- await userEvent.click(submitButton());
194
193
  await expect(listenerMock).toHaveBeenCalledWith(
195
194
  expect.objectContaining({
196
195
  detail: {
@@ -202,7 +201,6 @@ export const FiresEvent: StoryObj<LocationFilterProps> = {
202
201
 
203
202
  await step('Select Asia / Bangladesh / Rajshahi / Chapainawabgonj', async () => {
204
203
  await userEvent.type(inputField(), ' / Bangladesh / Rajshahi / Chapainawabgonj');
205
- await userEvent.click(submitButton());
206
204
  await expect(listenerMock).toHaveBeenCalledWith(
207
205
  expect.objectContaining({
208
206
  detail: {
@@ -18,7 +18,7 @@ import { PreactLitAdapter } from '../PreactLitAdapter';
18
18
  * Values for the fields `i > K` are considered `undefined`.
19
19
  *
20
20
  * @fires {CustomEvent<Record<string, string>>} gs-location-changed
21
- * Fired when the field is submitted with a valid location value.
21
+ * Fired when a value from the datalist is selected or when a valid value is typed into the field.
22
22
  * The `details` of this event contain an object with all `fields` as keys
23
23
  * and the corresponding values as values, if they are not `undefined`.
24
24
  * Example:
@@ -40,6 +40,8 @@ export class LocationFilterComponent extends PreactLitAdapter {
40
40
  initialValue = '';
41
41
 
42
42
  /**
43
+ * Required.
44
+ *
43
45
  * The fields to display in the location filter, in hierarchical order.
44
46
  * The top-level field should be the first entry in the array.
45
47
  * This component assumes that the values for each field form a strict hierarchy
@@ -51,13 +53,10 @@ export class LocationFilterComponent extends PreactLitAdapter {
51
53
  /**
52
54
  * The width of the component.
53
55
  *
54
- * If not set, the component will take the full width of its container.
55
- *
56
- * The width should be a string with a unit in css style, e.g. '100%', '500px' or '50vw'.
57
- * If the unit is %, the size will be relative to the container of the component.
56
+ * Visit https://genspectrum.github.io/dashboards/?path=/docs/components-size-of-components--docs for more information.
58
57
  */
59
- @property({ type: Object })
60
- width: string | undefined = undefined;
58
+ @property({ type: String })
59
+ width: string = '100%';
61
60
 
62
61
  override render() {
63
62
  return <LocationFilter initialValue={this.initialValue} fields={this.fields} width={this.width} />;
@@ -13,7 +13,8 @@ import './gs-mutation-filter';
13
13
  const codeExample = String.raw`
14
14
  <gs-mutation-filter
15
15
  initialValue='["A123T"]'
16
- size='{ "width": "100%", "height": "6.5rem" }'
16
+ width='100%'
17
+ height='6.5rem'
17
18
  ></gs-mutation-filter>`;
18
19
 
19
20
  const meta: Meta<MutationFilterProps> = {
@@ -36,11 +37,8 @@ const meta: Meta<MutationFilterProps> = {
36
37
  type: 'object',
37
38
  },
38
39
  },
39
- size: {
40
- control: {
41
- type: 'object',
42
- },
43
- },
40
+ width: { control: 'text' },
41
+ height: { control: 'text' },
44
42
  },
45
43
  decorators: [withActions],
46
44
  tags: ['autodocs'],
@@ -52,13 +50,18 @@ const Template: StoryObj<MutationFilterProps> = {
52
50
  render: (args) => {
53
51
  return html` <gs-app lapis="${LAPIS_URL}">
54
52
  <div class="max-w-screen-lg">
55
- <gs-mutation-filter .initialValue=${args.initialValue} .size=${args.size}></gs-mutation-filter>
53
+ <gs-mutation-filter
54
+ .initialValue=${args.initialValue}
55
+ .width=${args.width}
56
+ .height=${args.height}
57
+ ></gs-mutation-filter>
56
58
  </div>
57
59
  </gs-app>`;
58
60
  },
59
61
  args: {
60
62
  initialValue: [],
61
- size: { width: '100%', height: '3rem' },
63
+ width: '100%',
64
+ height: '3rem',
62
65
  },
63
66
  };
64
67
 
@@ -18,22 +18,30 @@ import { PreactLitAdapter } from '../PreactLitAdapter';
18
18
  * All previously selected mutations are displayed at the input field and added to the event.
19
19
  * Users can remove a mutation by clicking the 'x' button next to the mutation.
20
20
  *
21
+ * ## Input Validation
22
+ *
21
23
  * Validation of the input is performed according to the following rules:
22
24
  *
25
+ * ### Mutations
26
+ *
23
27
  * Mutations have to conform to the following format: `<gene/segment>:<symbol at reference><position><Substituted symbol/Deletion>`
24
- * - Gene/segment: The gene or segment where the mutation occurs. Must be contained in the reference genome
25
- * (Optional for elements with only one gene/segment)
26
- * - Symbol at reference: The symbol at the reference position. (Optional)
27
- * - Position: The position of the mutation. (Required)
28
- * - Substituted symbol/Deletion: The substituted symbol or '-' for a deletion. (Required)
29
- * Example: S:614G, 614G, 614- or 614G
28
+ * - Gene/segment: The gene or segment where the mutation occurs. Must be contained in the reference genome.
29
+ * (Optional for elements with only one gene/segment)
30
+ * - Symbol at reference: The symbol at the reference position. (Optional)
31
+ * - Position: The position of the mutation. (Required)
32
+ * - Substituted symbol/Deletion: The substituted symbol or '-' for a deletion. (Required)
33
+ *
34
+ * Examples: `S:614G`, `614G`, `614-`, `614G`
35
+ *
36
+ * ### Insertions
30
37
  *
31
38
  * Insertions have to conform to the following format: `ins_<gene/segment>:<position>:<Inserted symbols>`
32
- * - Gene/segment: The gene or segment where the insertion occurs. Must be contained in the reference genome
33
- * (Optional for elements with only one gene/segment)
34
- * - Position: The position of the insertion. (Required)
35
- * - Inserted symbols: The symbols that are inserted. (Required)
36
- * Example: ins_S:614:G, ins_614:G
39
+ * - Gene/segment: The gene or segment where the insertion occurs. Must be contained in the reference genome.
40
+ * (Optional for elements with only one gene/segment)
41
+ * - Position: The position of the insertion. (Required)
42
+ * - Inserted symbols: The symbols that are inserted. (Required)
43
+ *
44
+ * Examples: `ins_S:614:G`, `ins_614:G`
37
45
  *
38
46
  * @fires {CustomEvent<{
39
47
  * nucleotideMutations: string[],
@@ -61,36 +69,40 @@ export class MutationFilterComponent extends PreactLitAdapter {
61
69
  // The multiline union type must not start with `|` because it looks weird in the Storybook docs
62
70
  /**
63
71
  * The initial value to use for this mutation filter.
64
- * Must be either
65
- * - an array of strings of valid mutations.
66
- * - an object with the keys `nucleotideMutations`, `aminoAcidMutations`, `nucleotideInsertions` and `aminoAcidInsertions` and corresponding string arrays.
72
+ * All values provided must be valid mutations or insertions.
73
+ * Invalid values will be ignored.
67
74
  */
68
75
  @property()
69
76
  initialValue:
70
77
  {
71
- nucleotideMutations: string[];
72
- aminoAcidMutations: string[];
73
- nucleotideInsertions: string[];
74
- aminoAcidInsertions: string[];
75
- }
78
+ nucleotideMutations: string[];
79
+ aminoAcidMutations: string[];
80
+ nucleotideInsertions: string[];
81
+ aminoAcidInsertions: string[];
82
+ }
76
83
  | string[]
77
84
  | undefined = undefined;
78
85
 
79
86
  /**
80
- * The size of the component.
87
+ * The width of the component.
81
88
  *
82
- * If not set, the component will take the full width of its container with height 700px.
89
+ * Visit https://genspectrum.github.io/dashboards/?path=/docs/components-size-of-components--docs for more information.
90
+ */
91
+ @property({ type: String })
92
+ width: string = '100%';
93
+
94
+ /**
95
+ * The height of the component.
83
96
  *
84
- * The width and height should be a string with a unit in css style, e.g. '100%', '500px' or '50vh'.
85
- * If the unit is %, the size will be relative to the container of the component.
97
+ * Visit https://genspectrum.github.io/dashboards/?path=/docs/components-size-of-components--docs for more information.
86
98
  */
87
- @property({ type: Object })
88
- size: { width?: string; height?: string } | undefined = undefined;
99
+ @property({ type: String })
100
+ height: string = '6.5rem';
89
101
 
90
102
  override render() {
91
103
  return (
92
104
  <ReferenceGenomesAwaiter>
93
- <MutationFilter initialValue={this.initialValue} size={this.size} />
105
+ <MutationFilter initialValue={this.initialValue} width={this.width} height={this.height} />
94
106
  </ReferenceGenomesAwaiter>
95
107
  );
96
108
  }
@@ -19,7 +19,7 @@ const codeExample = String.raw`
19
19
  width="50%">
20
20
  </gs-text-input>`;
21
21
 
22
- const meta: Meta<TextInputProps> = {
22
+ const meta: Meta<Required<TextInputProps>> = {
23
23
  title: 'Input/Text input',
24
24
  component: 'gs-text-input',
25
25
  parameters: withComponentDocs({
@@ -77,7 +77,7 @@ const meta: Meta<TextInputProps> = {
77
77
 
78
78
  export default meta;
79
79
 
80
- export const Default: StoryObj<TextInputProps> = {
80
+ export const Default: StoryObj<Required<TextInputProps>> = {
81
81
  render: (args) => {
82
82
  return html` <gs-app lapis="${LAPIS_URL}">
83
83
  <div class="max-w-screen-lg">
@@ -98,7 +98,7 @@ export const Default: StoryObj<TextInputProps> = {
98
98
  },
99
99
  };
100
100
 
101
- export const FiresEvent: StoryObj<TextInputProps> = {
101
+ export const FiresEvent: StoryObj<Required<TextInputProps>> = {
102
102
  ...Default,
103
103
  play: async ({ canvasElement, step }) => {
104
104
  const canvas = await withinShadowRoot(canvasElement, 'gs-text-input');
@@ -7,7 +7,7 @@ import { PreactLitAdapter } from '../PreactLitAdapter';
7
7
  *
8
8
  * ## Context
9
9
  *
10
- * This component provides a text input field to specify filters for arbitrary fields of this Lapis instance.
10
+ * This component provides a text input field to specify filters for arbitrary fields of this LAPIS instance.
11
11
  *
12
12
  * @fires {CustomEvent<Record<string, string>>} gs-text-input-changed
13
13
  * Fired when the input field is changed.
@@ -25,10 +25,13 @@ export class TextInputComponent extends PreactLitAdapter {
25
25
  * The initial value to use for this text input.
26
26
  */
27
27
  @property()
28
- initialValue: string | undefined = '';
28
+ initialValue: string = '';
29
29
 
30
30
  /**
31
- * The Lapis field name to use for this text input.
31
+ * Required.
32
+ *
33
+ * The LAPIS field name to use for this text input.
34
+ * The field must exist on this LAPIS instance.
32
35
  */
33
36
  @property()
34
37
  lapisField = '';
@@ -37,18 +40,15 @@ export class TextInputComponent extends PreactLitAdapter {
37
40
  * The placeholder text to display in the input field.
38
41
  */
39
42
  @property()
40
- placeholderText: string | undefined = '';
43
+ placeholderText: string = '';
41
44
 
42
45
  /**
43
46
  * The width of the component.
44
47
  *
45
- * If not set, the component will take the full width of its container.
46
- *
47
- * The width should be a string with a unit in css style, e.g. '100%', '500px' or '50vw'.
48
- * If the unit is %, the size will be relative to the container of the component.
48
+ * Visit https://genspectrum.github.io/dashboards/?path=/docs/components-size-of-components--docs for more information.
49
49
  */
50
- @property({ type: Object })
51
- width: string | undefined = undefined;
50
+ @property({ type: String })
51
+ width: string = '100%';
52
52
 
53
53
  override render() {
54
54
  return (