@genspectrum/dashboard-components 0.19.7 → 0.19.9

package/dist/util.d.ts

@@ -938,7 +938,7 @@ declare global {
 
 declare global {
     interface HTMLElementTagNameMap {
-        'gs-genome-data-viewer': GenomeDataViewerComponent;
+        'gs-wastewater-mutations-over-time': WastewaterMutationsOverTimeComponent;
     }
 }
 
@@ -946,7 +946,7 @@ declare global {
 declare global {
     namespace JSX {
         interface IntrinsicElements {
-            'gs-genome-data-viewer': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
+            'gs-wastewater-mutations-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
         }
     }
 }
@@ -954,7 +954,7 @@ declare global {
 
 declare global {
     interface HTMLElementTagNameMap {
-        'gs-mutations-component': MutationsComponent;
+        'gs-genome-data-viewer': GenomeDataViewerComponent;
     }
 }
 
@@ -962,7 +962,7 @@ declare global {
 declare global {
     namespace JSX {
         interface IntrinsicElements {
-            'gs-mutations-component': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
+            'gs-genome-data-viewer': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
         }
     }
 }
@@ -986,7 +986,7 @@ declare global {
 
 declare global {
     interface HTMLElementTagNameMap {
-        'gs-prevalence-over-time': PrevalenceOverTimeComponent;
+        'gs-mutations': MutationsComponent;
     }
 }
 
@@ -994,7 +994,7 @@ declare global {
 declare global {
     namespace JSX {
         interface IntrinsicElements {
-            'gs-prevalence-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
+            'gs-mutations': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
         }
     }
 }
@@ -1018,7 +1018,7 @@ declare global {
 
 declare global {
     interface HTMLElementTagNameMap {
-        'gs-aggregate': AggregateComponent;
+        'gs-prevalence-over-time': PrevalenceOverTimeComponent;
     }
 }
 
@@ -1026,7 +1026,7 @@ declare global {
 declare global {
     namespace JSX {
         interface IntrinsicElements {
-            'gs-aggregate': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
+            'gs-prevalence-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
         }
     }
 }
@@ -1034,7 +1034,7 @@ declare global {
 
 declare global {
     interface HTMLElementTagNameMap {
-        'gs-number-sequences-over-time': NumberSequencesOverTimeComponent;
+        'gs-aggregate': AggregateComponent;
     }
 }
 
@@ -1042,7 +1042,7 @@ declare global {
 declare global {
     namespace JSX {
         interface IntrinsicElements {
-            'gs-number-sequences-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
+            'gs-aggregate': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
         }
     }
 }
@@ -1050,7 +1050,7 @@ declare global {
 
 declare global {
     interface HTMLElementTagNameMap {
-        'gs-mutations-over-time': MutationsOverTimeComponent;
+        'gs-number-sequences-over-time': NumberSequencesOverTimeComponent;
     }
 }
 
@@ -1058,7 +1058,7 @@ declare global {
 declare global {
     namespace JSX {
         interface IntrinsicElements {
-            'gs-mutations-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
+            'gs-number-sequences-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
         }
     }
 }
@@ -1066,7 +1066,7 @@ declare global {
 
 declare global {
     interface HTMLElementTagNameMap {
-        'gs-sequences-by-location': SequencesByLocationComponent;
+        'gs-mutations-over-time': MutationsOverTimeComponent;
     }
 }
 
@@ -1074,7 +1074,7 @@ declare global {
 declare global {
     namespace JSX {
         interface IntrinsicElements {
-            'gs-sequences-by-location': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
+            'gs-mutations-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
         }
     }
 }
@@ -1082,7 +1082,7 @@ declare global {
 
 declare global {
     interface HTMLElementTagNameMap {
-        'gs-statistics': StatisticsComponent;
+        'gs-sequences-by-location': SequencesByLocationComponent;
     }
 }
 
@@ -1090,7 +1090,7 @@ declare global {
 declare global {
     namespace JSX {
         interface IntrinsicElements {
-            'gs-statistics': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
+            'gs-sequences-by-location': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
         }
     }
 }
@@ -1098,7 +1098,11 @@ declare global {
 
 declare global {
     interface HTMLElementTagNameMap {
-        'gs-wastewater-mutations-over-time': WastewaterMutationsOverTimeComponent;
+        'gs-date-range-filter': DateRangeFilterComponent;
+    }
+    interface HTMLElementEventMap {
+        [gsEventNames.dateRangeFilterChanged]: CustomEvent<Record<string, string>>;
+        [gsEventNames.dateRangeOptionChanged]: DateRangeOptionChangedEvent;
     }
 }
 
@@ -1106,7 +1110,7 @@ declare global {
 declare global {
     namespace JSX {
         interface IntrinsicElements {
-            'gs-wastewater-mutations-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
+            'gs-date-range-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
         }
     }
 }
@@ -1114,11 +1118,7 @@ declare global {
 
 declare global {
     interface HTMLElementTagNameMap {
-        'gs-date-range-filter': DateRangeFilterComponent;
-    }
-    interface HTMLElementEventMap {
-        [gsEventNames.dateRangeFilterChanged]: CustomEvent<Record<string, string>>;
-        [gsEventNames.dateRangeOptionChanged]: DateRangeOptionChangedEvent;
+        'gs-statistics': StatisticsComponent;
     }
 }
 
@@ -1126,7 +1126,7 @@ declare global {
 declare global {
     namespace JSX {
         interface IntrinsicElements {
-            'gs-date-range-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
+            'gs-statistics': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
         }
     }
 }

package/package.json

@@ -1,6 +1,6 @@
 {
     "name": "@genspectrum/dashboard-components",
-    "version": "0.19.7",
+    "version": "0.19.9",
     "description": "GenSpectrum web components for building dashboards",
     "type": "module",
     "license": "AGPL-3.0-only",

package/src/lapisApi/LineageDefinition.ts

@@ -0,0 +1,9 @@
+import z from 'zod';
+
+const lineage = z.object({
+    parents: z.array(z.string()).optional(),
+    aliases: z.array(z.string()),
+});
+
+export const lineageDefinitionResponseSchema = z.record(lineage);
+export type LineageDefinitionResponse = z.infer<typeof lineageDefinitionResponseSchema>;

package/src/lapisApi/lapisApi.ts

@@ -11,6 +11,7 @@ import {
     type ProblemDetail,
 } from './lapisTypes';
 import { type SequenceType } from '../types';
+import { lineageDefinitionResponseSchema } from './LineageDefinition';
 
 export class UnknownLapisError extends Error {
     constructor(
@@ -127,6 +128,30 @@ export async function fetchReferenceGenome(lapisUrl: string, signal?: AbortSigna
     return referenceGenomeResponse.parse(await response.json());
 }
 
+export async function fetchLineageDefinition({
+    lapisUrl,
+    lapisField,
+    signal,
+}: {
+    lapisUrl: string;
+    lapisField: string;
+    signal?: AbortSignal;
+}) {
+    const response = await callLapis(
+        lineageDefinitionEndpoint(lapisUrl, lapisField),
+        {
+            method: 'GET',
+            headers: {
+                'Content-Type': 'application/json',
+            },
+            signal,
+        },
+        `${lapisField} lineage definition`,
+    );
+
+    return lineageDefinitionResponseSchema.parse(await response.json());
+}
+
 async function callLapis(
     input: Parameters<typeof fetch>[0],
     init: Parameters<typeof fetch>[1],
@@ -191,3 +216,5 @@ export const substitutionsOrDeletionsEndpoint = (lapisUrl: string, sequenceType:
         : `${lapisUrl}/sample/nucleotideMutations`;
 };
 export const referenceGenomeEndpoint = (lapisUrl: string) => `${lapisUrl}/sample/referenceGenome`;
+export const lineageDefinitionEndpoint = (lapisUrl: string, lapisField: string) =>
+    `${lapisUrl}/sample/lineageDefinition/${lapisField}`;