@genspectrum/dashboard-components 0.19.7 → 0.19.8

package/dist/util.d.ts

@@ -954,7 +954,7 @@ declare global {
 
 declare global {
     interface HTMLElementTagNameMap {
-        'gs-mutations-component': MutationsComponent;
+        'gs-mutation-comparison-component': MutationComparisonComponent;
     }
 }
 
@@ -962,7 +962,7 @@ declare global {
 declare global {
     namespace JSX {
         interface IntrinsicElements {
-            'gs-mutations-component': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
+            'gs-mutation-comparison-component': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
         }
     }
 }
@@ -970,7 +970,7 @@ declare global {
 
 declare global {
     interface HTMLElementTagNameMap {
-        'gs-mutation-comparison-component': MutationComparisonComponent;
+        'gs-mutations-component': MutationsComponent;
     }
 }
 
@@ -978,7 +978,7 @@ declare global {
 declare global {
     namespace JSX {
         interface IntrinsicElements {
-            'gs-mutation-comparison-component': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
+            'gs-mutations-component': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
         }
     }
 }
@@ -1082,7 +1082,11 @@ declare global {
 
 declare global {
     interface HTMLElementTagNameMap {
-        'gs-statistics': StatisticsComponent;
+        'gs-date-range-filter': DateRangeFilterComponent;
+    }
+    interface HTMLElementEventMap {
+        [gsEventNames.dateRangeFilterChanged]: CustomEvent<Record<string, string>>;
+        [gsEventNames.dateRangeOptionChanged]: DateRangeOptionChangedEvent;
     }
 }
 
@@ -1090,7 +1094,7 @@ declare global {
 declare global {
     namespace JSX {
         interface IntrinsicElements {
-            'gs-statistics': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
+            'gs-date-range-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
         }
     }
 }
@@ -1098,7 +1102,10 @@ declare global {
 
 declare global {
     interface HTMLElementTagNameMap {
-        'gs-wastewater-mutations-over-time': WastewaterMutationsOverTimeComponent;
+        'gs-location-filter': LocationFilterComponent;
+    }
+    interface HTMLElementEventMap {
+        [gsEventNames.locationChanged]: LocationChangedEvent;
     }
 }
 
@@ -1106,7 +1113,7 @@ declare global {
 declare global {
     namespace JSX {
         interface IntrinsicElements {
-            'gs-wastewater-mutations-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
+            'gs-location-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
         }
     }
 }
@@ -1114,11 +1121,7 @@ declare global {
 
 declare global {
     interface HTMLElementTagNameMap {
-        'gs-date-range-filter': DateRangeFilterComponent;
-    }
-    interface HTMLElementEventMap {
-        [gsEventNames.dateRangeFilterChanged]: CustomEvent<Record<string, string>>;
-        [gsEventNames.dateRangeOptionChanged]: DateRangeOptionChangedEvent;
+        'gs-statistics': StatisticsComponent;
     }
 }
 
@@ -1126,7 +1129,7 @@ declare global {
 declare global {
     namespace JSX {
         interface IntrinsicElements {
-            'gs-date-range-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
+            'gs-statistics': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
         }
     }
 }
@@ -1134,10 +1137,10 @@ declare global {
 
 declare global {
     interface HTMLElementTagNameMap {
-        'gs-location-filter': LocationFilterComponent;
+        'gs-text-filter': TextFilterComponent;
     }
     interface HTMLElementEventMap {
-        [gsEventNames.locationChanged]: LocationChangedEvent;
+        [gsEventNames.textFilterChanged]: TextFilterChangedEvent;
     }
 }
 
@@ -1145,7 +1148,7 @@ declare global {
 declare global {
     namespace JSX {
         interface IntrinsicElements {
-            'gs-location-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
+            'gs-text-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
         }
     }
 }
@@ -1153,10 +1156,10 @@ declare global {
 
 declare global {
     interface HTMLElementTagNameMap {
-        'gs-text-filter': TextFilterComponent;
+        'gs-lineage-filter': LineageFilterComponent;
     }
     interface HTMLElementEventMap {
-        [gsEventNames.textFilterChanged]: TextFilterChangedEvent;
+        [gsEventNames.lineageFilterChanged]: LineageFilterChangedEvent;
     }
 }
 
@@ -1164,7 +1167,7 @@ declare global {
 declare global {
     namespace JSX {
         interface IntrinsicElements {
-            'gs-text-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
+            'gs-lineage-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
         }
     }
 }
@@ -1191,10 +1194,11 @@ declare global {
 
 declare global {
     interface HTMLElementTagNameMap {
-        'gs-lineage-filter': LineageFilterComponent;
+        'gs-number-range-filter': NumberRangeFilterComponent;
     }
     interface HTMLElementEventMap {
-        [gsEventNames.lineageFilterChanged]: LineageFilterChangedEvent;
+        [gsEventNames.numberRangeFilterChanged]: NumberRangeFilterChangedEvent;
+        [gsEventNames.numberRangeValueChanged]: NumberRangeValueChangedEvent;
     }
 }
 
@@ -1202,7 +1206,7 @@ declare global {
 declare global {
     namespace JSX {
         interface IntrinsicElements {
-            'gs-lineage-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
+            'gs-number-range-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
         }
     }
 }
@@ -1210,11 +1214,7 @@ declare global {
 
 declare global {
     interface HTMLElementTagNameMap {
-        'gs-number-range-filter': NumberRangeFilterComponent;
-    }
-    interface HTMLElementEventMap {
-        [gsEventNames.numberRangeFilterChanged]: NumberRangeFilterChangedEvent;
-        [gsEventNames.numberRangeValueChanged]: NumberRangeValueChangedEvent;
+        'gs-wastewater-mutations-over-time': WastewaterMutationsOverTimeComponent;
     }
 }
 
@@ -1222,7 +1222,7 @@ declare global {
 declare global {
     namespace JSX {
         interface IntrinsicElements {
-            'gs-number-range-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
+            'gs-wastewater-mutations-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
         }
     }
 }

package/package.json

@@ -1,6 +1,6 @@
 {
     "name": "@genspectrum/dashboard-components",
-    "version": "0.19.7",
+    "version": "0.19.8",
     "description": "GenSpectrum web components for building dashboards",
     "type": "module",
     "license": "AGPL-3.0-only",

package/src/lapisApi/LineageDefinition.ts

@@ -0,0 +1,9 @@
+import z from 'zod';
+
+const lineage = z.object({
+    parents: z.array(z.string()).optional(),
+    aliases: z.array(z.string()),
+});
+
+export const lineageDefinitionResponseSchema = z.record(lineage);
+export type LineageDefinitionResponse = z.infer<typeof lineageDefinitionResponseSchema>;

package/src/lapisApi/lapisApi.ts

@@ -11,6 +11,7 @@ import {
     type ProblemDetail,
 } from './lapisTypes';
 import { type SequenceType } from '../types';
+import { lineageDefinitionResponseSchema } from './LineageDefinition';
 
 export class UnknownLapisError extends Error {
     constructor(
@@ -127,6 +128,30 @@ export async function fetchReferenceGenome(lapisUrl: string, signal?: AbortSigna
     return referenceGenomeResponse.parse(await response.json());
 }
 
+export async function fetchLineageDefinition({
+    lapisUrl,
+    lapisField,
+    signal,
+}: {
+    lapisUrl: string;
+    lapisField: string;
+    signal?: AbortSignal;
+}) {
+    const response = await callLapis(
+        lineageDefinitionEndpoint(lapisUrl, lapisField),
+        {
+            method: 'GET',
+            headers: {
+                'Content-Type': 'application/json',
+            },
+            signal,
+        },
+        `${lapisField} lineage definition`,
+    );
+
+    return lineageDefinitionResponseSchema.parse(await response.json());
+}
+
 async function callLapis(
     input: Parameters<typeof fetch>[0],
     init: Parameters<typeof fetch>[1],
@@ -191,3 +216,5 @@ export const substitutionsOrDeletionsEndpoint = (lapisUrl: string, sequenceType:
         : `${lapisUrl}/sample/nucleotideMutations`;
 };
 export const referenceGenomeEndpoint = (lapisUrl: string) => `${lapisUrl}/sample/referenceGenome`;
+export const lineageDefinitionEndpoint = (lapisUrl: string, lapisField: string) =>
+    `${lapisUrl}/sample/lineageDefinition/${lapisField}`;