@genspectrum/dashboard-components 0.16.3 → 0.17.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (61) hide show
  1. package/custom-elements.json +86 -61
  2. package/dist/{LineageFilterChangedEvent-COWV-Y0k.js → LineageFilterChangedEvent-DkvWdq_G.js} +2 -2
  3. package/dist/LineageFilterChangedEvent-DkvWdq_G.js.map +1 -0
  4. package/dist/assets/{mutationOverTimeWorker-DJcZmEH9.js.map → mutationOverTimeWorker-CPfQDLe6.js.map} +1 -1
  5. package/dist/components.d.ts +64 -51
  6. package/dist/components.js +1134 -937
  7. package/dist/components.js.map +1 -1
  8. package/dist/style.css +81 -9
  9. package/dist/util.d.ts +76 -34
  10. package/dist/util.js +1 -1
  11. package/package.json +2 -1
  12. package/src/preact/components/annotated-mutation.stories.tsx +2 -1
  13. package/src/preact/components/annotated-mutation.tsx +6 -2
  14. package/src/preact/components/clearable-select.stories.tsx +75 -0
  15. package/src/preact/components/clearable-select.tsx +76 -0
  16. package/src/preact/components/downshift-combobox.tsx +9 -7
  17. package/src/preact/dateRangeFilter/computeInitialValues.spec.ts +31 -33
  18. package/src/preact/dateRangeFilter/computeInitialValues.ts +2 -15
  19. package/src/preact/dateRangeFilter/date-picker.tsx +66 -0
  20. package/src/preact/dateRangeFilter/date-range-filter.stories.tsx +69 -31
  21. package/src/preact/dateRangeFilter/date-range-filter.tsx +136 -139
  22. package/src/preact/dateRangeFilter/dateRangeOption.ts +11 -11
  23. package/src/preact/mutationComparison/mutation-comparison-table.tsx +14 -1
  24. package/src/preact/mutationComparison/mutation-comparison-venn.tsx +39 -8
  25. package/src/preact/mutationComparison/mutation-comparison.stories.tsx +36 -12
  26. package/src/preact/mutationComparison/mutation-comparison.tsx +2 -0
  27. package/src/preact/mutations/mutations.stories.tsx +3 -9
  28. package/src/preact/mutationsOverTime/mutations-over-time.stories.tsx +3 -8
  29. package/src/preact/shared/WithClassName/WithClassName.ts +1 -0
  30. package/src/preact/shared/icons/DeleteIcon.tsx +3 -0
  31. package/src/preact/shared/stories/expectMutationAnnotation.ts +13 -0
  32. package/src/preact/shared/stories/expectOptionSelected.tsx +7 -0
  33. package/src/utilEntrypoint.ts +3 -1
  34. package/src/web-components/MutationAnnotations.mdx +33 -0
  35. package/src/web-components/ResizeContainer.mdx +1 -1
  36. package/src/web-components/errorHandling.mdx +1 -1
  37. package/src/web-components/gs-app.ts +2 -2
  38. package/src/web-components/input/gs-date-range-filter.stories.ts +38 -32
  39. package/src/web-components/input/gs-date-range-filter.tsx +8 -2
  40. package/src/web-components/input/gs-lineage-filter.tsx +1 -1
  41. package/src/web-components/input/gs-location-filter.tsx +1 -1
  42. package/src/web-components/input/gs-mutation-filter.tsx +1 -1
  43. package/src/web-components/input/gs-text-filter.tsx +1 -1
  44. package/src/web-components/visualization/gs-aggregate.tsx +2 -2
  45. package/src/web-components/visualization/gs-mutation-comparison.stories.ts +18 -1
  46. package/src/web-components/visualization/gs-mutation-comparison.tsx +24 -10
  47. package/src/web-components/visualization/gs-mutations-over-time.stories.ts +2 -1
  48. package/src/web-components/visualization/gs-mutations-over-time.tsx +5 -2
  49. package/src/web-components/visualization/gs-mutations.stories.ts +2 -1
  50. package/src/web-components/visualization/gs-mutations.tsx +5 -2
  51. package/src/web-components/visualization/gs-number-sequences-over-time.tsx +2 -2
  52. package/src/web-components/visualization/gs-prevalence-over-time.tsx +2 -2
  53. package/src/web-components/visualization/gs-relative-growth-advantage.tsx +2 -2
  54. package/src/web-components/visualization/gs-sequences-by-location.tsx +2 -2
  55. package/src/web-components/visualization/gs-statistics.tsx +2 -2
  56. package/src/web-components/wastewaterVisualization/gs-wastewater-mutations-over-time.tsx +2 -2
  57. package/standalone-bundle/assets/mutationOverTimeWorker-CERZSdcA.js.map +1 -1
  58. package/standalone-bundle/dashboard-components.js +13293 -12635
  59. package/standalone-bundle/dashboard-components.js.map +1 -1
  60. package/standalone-bundle/style.css +1 -1
  61. package/dist/LineageFilterChangedEvent-COWV-Y0k.js.map +0 -1
@@ -59,13 +59,13 @@ export declare class AggregateComponent extends PreactLitAdapterWithGridJsStyles
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  /**
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  * The width of the component.
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  *
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- * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/components-size-of-components--docs for more information.
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  */
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  width: string;
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  /**
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  * The height of the component.
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  *
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- * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/components-size-of-components--docs for more information.
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  */
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  height: string | undefined;
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  /**
@@ -115,8 +115,8 @@ export declare class AppComponent extends LitElement {
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  lapis: string;
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  /**
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  * Supply lists of mutations that are especially relevant for the current organism.
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- * Whenever other components display mutations, matching mutations will be highlighted by appending the `symbol`.
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- * On hover, a tooltip with the `name` and `description` will be shown.
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+ *
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-mutation-annotations--docs for more information.
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  */
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  mutationAnnotations: {
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  name: string;
@@ -197,7 +197,6 @@ export declare class DateRangeFilterComponent extends PreactLitAdapter {
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  * - If it is a string, then it must be a valid label from the `dateRangeOptions`.
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  * - If it is an object, then it accepts dates in the format `YYYY-MM-DD` for the keys `dateFrom` and `dateTo`.
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  * Keys that are not set will default to the `earliestDate` or the current date respectively.
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- * - If the attribute is not set, the component will default to the range `earliestDate` until today.
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  *
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  * The `detail` of the `gs-date-range-option-changed` event can be used for this attribute,
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  * if you want to control this component in your JS application.
@@ -209,9 +208,13 @@ export declare class DateRangeFilterComponent extends PreactLitAdapter {
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  /**
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  * The width of the component.
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  *
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- * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/components-size-of-components--docs for more information.
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  */
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  width: string;
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+ /**
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+ * The placeholder to display on the select dropdown.
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+ */
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+ placeholder: string | undefined;
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  /**
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  * The name of the metadata field in LAPIS that contains the date information.
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  */
@@ -277,7 +280,7 @@ export declare class LineageFilterComponent extends PreactLitAdapter {
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  /**
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  * The width of the component.
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  *
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- * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/components-size-of-components--docs for more information.
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  */
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  width: string;
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  render(): JSX_2.Element;
@@ -335,7 +338,7 @@ export declare class LocationFilterComponent extends PreactLitAdapter {
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  /**
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  * The width of the component.
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  *
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- * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/components-size-of-components--docs for more information.
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  */
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  width: string;
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  /**
@@ -375,6 +378,9 @@ declare const mutationAnnotationsSchema: default_2.ZodArray<default_2.ZodObject<
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  *
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  * It only shows substitutions and deletions, it does not show insertions.
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  *
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+ * This component supports mutations annotations.
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-mutation-annotations--docs for more information.
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+ *
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  * ## Views
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  *
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  * ### Table View
@@ -423,13 +429,13 @@ export declare class MutationComparisonComponent extends PreactLitAdapterWithGri
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  /**
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  * The width of the component.
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  *
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- * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/components-size-of-components--docs for more information.
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  */
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  width: string;
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  /**
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  * The height of the component.
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  *
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- * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/components-size-of-components--docs for more information.
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  */
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  height: string | undefined;
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  /**
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  * Set to `false` to disable pagination. Set to `true` to enable pagination with a default limit (10).
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  */
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  pageSize: boolean | number;
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+ /* Excluded from this release type: mutationAnnotations */
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  render(): JSX_2.Element;
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  }
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@@ -500,7 +507,7 @@ export declare class MutationFilterComponent extends PreactLitAdapter {
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  /**
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  * The width of the component.
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  *
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- * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/components-size-of-components--docs for more information.
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  */
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  width: string;
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  render(): JSX_2.Element;
@@ -511,6 +518,9 @@ export declare class MutationFilterComponent extends PreactLitAdapter {
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  *
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  * This component displays mutations (substitutions, deletions and insertions) for a dataset selected by a LAPIS filter.
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  *
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+ * This component supports mutations annotations.
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-mutation-annotations--docs for more information.
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+ *
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  * ## Views
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  *
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  * ### Table View
@@ -588,13 +598,13 @@ export declare class MutationsComponent extends PreactLitAdapterWithGridJsStyles
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  /**
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  * The width of the component.
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  *
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- * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/components-size-of-components--docs for more information.
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  */
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  width: string;
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  /**
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  * The height of the component.
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  *
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- * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/components-size-of-components--docs for more information.
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  */
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  height: string | undefined;
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  /**
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  * The shown date range is determined by the date field in the LAPIS filter.
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  * If the date field is not set, the date range is determined by all available dates in the dataset.
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  *
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+ * This component supports mutations annotations.
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-mutation-annotations--docs for more information.
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+ *
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  * ## Views
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  *
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  * ### Grid View
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  /**
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  * The width of the component.
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  *
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  */
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  /**
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  */
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  /**
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  /**
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  */
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  /**
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  /**
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  * The width of the component.
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  *
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  */
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  /**
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  * The height of the component.
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  *
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  */
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  /**
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  */
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  */
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  /**
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  * Not that the map in the map view is not responsive
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  * (i.e. does not adjust its size when the component is resized).
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  *
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  /**
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  */
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  /**
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  *
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  */
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  */
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@@ -1302,7 +1315,7 @@ export declare class TextFilterComponent extends PreactLitAdapter {
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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@@ -1352,13 +1365,13 @@ export declare class WastewaterMutationsOverTimeComponent extends PreactLitAdapt
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  /**
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+ * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/concepts-size-of-components--docs for more information.
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  interface HTMLElementTagNameMap {
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- 'gs-relative-growth-advantage': RelativeGrowthAdvantageComponent;
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+ 'gs-prevalence-over-time': PrevalenceOverTimeComponent;
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  }
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  declare global {
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  namespace JSX {
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  interface IntrinsicElements {
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+ 'gs-prevalence-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
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  }
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  declare global {
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  interface IntrinsicElements {
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  declare global {
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- 'gs-mutations-over-time': MutationsOverTimeComponent;
1493
+ 'gs-number-sequences-over-time': NumberSequencesOverTimeComponent;
1481
1494
  }
1482
1495
  }
1483
1496
 
@@ -1485,7 +1498,7 @@ declare global {
1485
1498
  declare global {
1486
1499
  namespace JSX {
1487
1500
  interface IntrinsicElements {
1488
- 'gs-mutations-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1501
+ 'gs-number-sequences-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1489
1502
  }
1490
1503
  }
1491
1504
  }
@@ -1493,7 +1506,7 @@ declare global {
1493
1506
 
1494
1507
  declare global {
1495
1508
  interface HTMLElementTagNameMap {
1496
- 'gs-aggregate': AggregateComponent;
1509
+ 'gs-mutations-over-time': MutationsOverTimeComponent;
1497
1510
  }
1498
1511
  }
1499
1512
 
@@ -1501,7 +1514,7 @@ declare global {
1501
1514
  declare global {
1502
1515
  namespace JSX {
1503
1516
  interface IntrinsicElements {
1504
- 'gs-aggregate': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1517
+ 'gs-mutations-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1505
1518
  }
1506
1519
  }
1507
1520
  }
@@ -1509,7 +1522,7 @@ declare global {
1509
1522
 
1510
1523
  declare global {
1511
1524
  interface HTMLElementTagNameMap {
1512
- 'gs-statistics': StatisticsComponent;
1525
+ 'gs-sequences-by-location': SequencesByLocationComponent;
1513
1526
  }
1514
1527
  }
1515
1528
 
@@ -1517,7 +1530,7 @@ declare global {
1517
1530
  declare global {
1518
1531
  namespace JSX {
1519
1532
  interface IntrinsicElements {
1520
- 'gs-statistics': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1533
+ 'gs-sequences-by-location': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1521
1534
  }
1522
1535
  }
1523
1536
  }
@@ -1525,10 +1538,7 @@ declare global {
1525
1538
 
1526
1539
  declare global {
1527
1540
  interface HTMLElementTagNameMap {
1528
- 'gs-location-filter': LocationFilterComponent;
1529
- }
1530
- interface HTMLElementEventMap {
1531
- 'gs-location-changed': LocationChangedEvent;
1541
+ 'gs-statistics': StatisticsComponent;
1532
1542
  }
1533
1543
  }
1534
1544
 
@@ -1536,7 +1546,7 @@ declare global {
1536
1546
  declare global {
1537
1547
  namespace JSX {
1538
1548
  interface IntrinsicElements {
1539
- 'gs-location-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1549
+ 'gs-statistics': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1540
1550
  }
1541
1551
  }
1542
1552
  }
@@ -1544,7 +1554,11 @@ declare global {
1544
1554
 
1545
1555
  declare global {
1546
1556
  interface HTMLElementTagNameMap {
1547
- 'gs-sequences-by-location': SequencesByLocationComponent;
1557
+ 'gs-date-range-filter': DateRangeFilterComponent;
1558
+ }
1559
+ interface HTMLElementEventMap {
1560
+ 'gs-date-range-filter-changed': CustomEvent<Record<string, string>>;
1561
+ 'gs-date-range-option-changed': DateRangeOptionChangedEvent;
1548
1562
  }
1549
1563
  }
1550
1564
 
@@ -1552,7 +1566,7 @@ declare global {
1552
1566
  declare global {
1553
1567
  namespace JSX {
1554
1568
  interface IntrinsicElements {
1555
- 'gs-sequences-by-location': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1569
+ 'gs-date-range-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1556
1570
  }
1557
1571
  }
1558
1572
  }
@@ -1576,11 +1590,10 @@ declare global {
1576
1590
 
1577
1591
  declare global {
1578
1592
  interface HTMLElementTagNameMap {
1579
- 'gs-date-range-filter': DateRangeFilterComponent;
1593
+ 'gs-location-filter': LocationFilterComponent;
1580
1594
  }
1581
1595
  interface HTMLElementEventMap {
1582
- 'gs-date-range-filter-changed': CustomEvent<Record<string, string>>;
1583
- 'gs-date-range-option-changed': DateRangeOptionChangedEvent;
1596
+ 'gs-location-changed': LocationChangedEvent;
1584
1597
  }
1585
1598
  }
1586
1599
 
@@ -1588,7 +1601,7 @@ declare global {
1588
1601
  declare global {
1589
1602
  namespace JSX {
1590
1603
  interface IntrinsicElements {
1591
- 'gs-date-range-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1604
+ 'gs-location-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1592
1605
  }
1593
1606
  }
1594
1607
  }