@genspectrum/dashboard-components 0.15.0 → 0.16.1

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Files changed (86) hide show
  1. package/custom-elements.json +255 -57
  2. package/dist/components.d.ts +49 -32
  3. package/dist/components.js +361 -212
  4. package/dist/components.js.map +1 -1
  5. package/dist/style.css +9 -0
  6. package/dist/util.d.ts +43 -43
  7. package/package.json +1 -1
  8. package/src/preact/ReferenceGenomeContext.ts +16 -1
  9. package/src/preact/aggregatedData/aggregate-bar-chart.tsx +26 -5
  10. package/src/preact/aggregatedData/aggregate.stories.tsx +0 -1
  11. package/src/preact/aggregatedData/aggregate.tsx +5 -1
  12. package/src/preact/components/ReferenceGenomesAwaiter.tsx +1 -6
  13. package/src/preact/components/info.tsx +1 -0
  14. package/src/preact/components/resize-container.tsx +1 -1
  15. package/src/preact/mutationComparison/mutation-comparison-venn.tsx +4 -2
  16. package/src/preact/mutationComparison/mutation-comparison.stories.tsx +0 -1
  17. package/src/preact/mutationComparison/mutation-comparison.tsx +5 -1
  18. package/src/preact/mutationFilter/mutation-filter.stories.tsx +17 -1
  19. package/src/preact/mutationFilter/mutation-filter.tsx +8 -0
  20. package/src/preact/mutations/mutations.stories.tsx +0 -1
  21. package/src/preact/mutations/mutations.tsx +1 -1
  22. package/src/preact/mutationsOverTime/getFilteredMutationsOverTime.spec.ts +70 -14
  23. package/src/preact/mutationsOverTime/getFilteredMutationsOverTimeData.ts +30 -7
  24. package/src/preact/mutationsOverTime/mutations-over-time-grid.tsx +56 -55
  25. package/src/preact/mutationsOverTime/mutations-over-time.stories.tsx +26 -39
  26. package/src/preact/mutationsOverTime/mutations-over-time.tsx +22 -7
  27. package/src/preact/numberSequencesOverTime/number-sequences-over-time-bar-chart.tsx +8 -3
  28. package/src/preact/numberSequencesOverTime/number-sequences-over-time-line-chart.tsx +8 -3
  29. package/src/preact/numberSequencesOverTime/number-sequences-over-time.stories.tsx +3 -1
  30. package/src/preact/numberSequencesOverTime/number-sequences-over-time.tsx +18 -3
  31. package/src/preact/prevalenceOverTime/prevalence-over-time-bar-chart.tsx +48 -35
  32. package/src/preact/prevalenceOverTime/prevalence-over-time-bubble-chart.tsx +83 -70
  33. package/src/preact/prevalenceOverTime/prevalence-over-time-line-chart.tsx +48 -37
  34. package/src/preact/prevalenceOverTime/prevalence-over-time.stories.tsx +0 -3
  35. package/src/preact/prevalenceOverTime/prevalence-over-time.tsx +6 -1
  36. package/src/preact/relativeGrowthAdvantage/relative-growth-advantage-chart.tsx +31 -23
  37. package/src/preact/relativeGrowthAdvantage/relative-growth-advantage.stories.tsx +0 -1
  38. package/src/preact/relativeGrowthAdvantage/relative-growth-advantage.tsx +5 -1
  39. package/src/preact/sequencesByLocation/__mockData__/worldAtlas.json +1 -0
  40. package/src/preact/{map → sequencesByLocation}/sequences-by-location-map.tsx +6 -3
  41. package/src/preact/{map → sequencesByLocation}/sequences-by-location-table.tsx +1 -1
  42. package/src/preact/{map → sequencesByLocation}/sequences-by-location.stories.tsx +58 -1
  43. package/src/preact/{map → sequencesByLocation}/sequences-by-location.tsx +10 -1
  44. package/src/preact/shared/aspectRatio/AspectRatio.tsx +13 -0
  45. package/src/preact/shared/charts/getMaintainAspectRatio.ts +3 -0
  46. package/src/preact/statistic/statistics.stories.tsx +0 -1
  47. package/src/preact/statistic/statistics.tsx +4 -4
  48. package/src/preact/wastewater/mutationsOverTime/wastewater-mutations-over-time.stories.tsx +0 -1
  49. package/src/preact/wastewater/mutationsOverTime/wastewater-mutations-over-time.tsx +1 -1
  50. package/src/query/computeMapLocationData.spec.ts +1 -1
  51. package/src/query/computeMapLocationData.ts +1 -1
  52. package/src/query/querySequencesByLocationData.ts +1 -1
  53. package/src/utilEntrypoint.ts +1 -1
  54. package/src/web-components/PreactLitAdapter.tsx +2 -5
  55. package/src/web-components/ResizeContainer.mdx +4 -1
  56. package/src/web-components/gs-app.ts +2 -4
  57. package/src/web-components/visualization/gs-aggregate.stories.ts +13 -6
  58. package/src/web-components/visualization/gs-aggregate.tsx +1 -1
  59. package/src/web-components/visualization/gs-mutation-comparison.stories.ts +8 -1
  60. package/src/web-components/visualization/gs-mutation-comparison.tsx +1 -1
  61. package/src/web-components/visualization/gs-mutations-over-time.stories.ts +24 -1
  62. package/src/web-components/visualization/gs-mutations-over-time.tsx +30 -1
  63. package/src/web-components/visualization/gs-mutations.stories.ts +8 -1
  64. package/src/web-components/visualization/gs-mutations.tsx +1 -1
  65. package/src/web-components/visualization/gs-number-sequences-over-time.stories.ts +11 -1
  66. package/src/web-components/visualization/gs-number-sequences-over-time.tsx +1 -1
  67. package/src/web-components/visualization/gs-prevalence-over-time.stories.ts +8 -2
  68. package/src/web-components/visualization/gs-prevalence-over-time.tsx +1 -1
  69. package/src/web-components/visualization/gs-relative-growth-advantage.stories.ts +8 -1
  70. package/src/web-components/visualization/gs-relative-growth-advantage.tsx +1 -1
  71. package/src/web-components/visualization/gs-sequences-by-location.stories.ts +13 -7
  72. package/src/web-components/visualization/gs-sequences-by-location.tsx +6 -3
  73. package/src/web-components/visualization/gs-statistics.stories.ts +0 -1
  74. package/src/web-components/visualization/gs-statistics.tsx +1 -1
  75. package/src/web-components/wastewaterVisualization/gs-wastewater-mutations-over-time.stories.ts +9 -1
  76. package/src/web-components/wastewaterVisualization/gs-wastewater-mutations-over-time.tsx +1 -1
  77. package/standalone-bundle/dashboard-components.js +5817 -5706
  78. package/standalone-bundle/dashboard-components.js.map +1 -1
  79. package/standalone-bundle/style.css +1 -1
  80. package/src/preact/map/__mockData__/worldAtlas.json +0 -497127
  81. /package/src/preact/{map → sequencesByLocation}/__mockData__/aggregatedGermany.json +0 -0
  82. /package/src/preact/{map → sequencesByLocation}/__mockData__/aggregatedWorld.json +0 -0
  83. /package/src/preact/{map → sequencesByLocation}/__mockData__/germanyMap.json +0 -0
  84. /package/src/preact/{map → sequencesByLocation}/__mockData__/howToGenerateWorldMap.md +0 -0
  85. /package/src/preact/{map → sequencesByLocation}/leafletStyleModifications.css +0 -0
  86. /package/src/preact/{map → sequencesByLocation}/loadMapSource.tsx +0 -0
@@ -6,6 +6,7 @@ import { useEffect, useRef } from 'preact/hooks';
6
6
  import type { EnhancedGeoJsonFeatureProperties } from '../../query/computeMapLocationData';
7
7
  import { InfoHeadline1, InfoParagraph } from '../components/info';
8
8
  import { Modal, useModalRef } from '../components/modal';
9
+ import { AspectRatio } from '../shared/aspectRatio/AspectRatio';
9
10
  import { formatProportion } from '../shared/table/formatProportion';
10
11
 
11
12
  type SequencesByLocationMapProps = {
@@ -20,6 +21,7 @@ type SequencesByLocationMapProps = {
20
21
  offsetX: number;
21
22
  offsetY: number;
22
23
  hasTableView: boolean;
24
+ maintainAspectRatio: boolean;
23
25
  };
24
26
 
25
27
  export const SequencesByLocationMap: FunctionComponent<SequencesByLocationMapProps> = ({
@@ -34,6 +36,7 @@ export const SequencesByLocationMap: FunctionComponent<SequencesByLocationMapPro
34
36
  offsetX,
35
37
  offsetY,
36
38
  hasTableView,
39
+ maintainAspectRatio,
37
40
  }) => {
38
41
  const ref = useRef<HTMLDivElement>(null);
39
42
 
@@ -69,8 +72,8 @@ export const SequencesByLocationMap: FunctionComponent<SequencesByLocationMapPro
69
72
  }, [ref, locations, enableMapNavigation, lapisLocationField, zoom, offsetX, offsetY]);
70
73
 
71
74
  return (
72
- <div className='h-full'>
73
- <div ref={ref} className='h-full' />
75
+ <AspectRatio aspectRatio={maintainAspectRatio ? 50 : undefined}>
76
+ <div className='h-full' ref={ref} />
74
77
  <div className='relative'>
75
78
  <DataMatchInformation
76
79
  totalCount={totalCount}
@@ -80,7 +83,7 @@ export const SequencesByLocationMap: FunctionComponent<SequencesByLocationMapPro
80
83
  hasTableView={hasTableView}
81
84
  />
82
85
  </div>
83
- </div>
86
+ </AspectRatio>
84
87
  );
85
88
  };
86
89
 
@@ -32,7 +32,7 @@ export const SequencesByLocationTable: FunctionComponent<SequencesByLocationTabl
32
32
  sort: true,
33
33
  formatter: (cell: number) => formatProportion(cell),
34
34
  },
35
- ...('isShownOnMap' in tableData[0]
35
+ ...(tableData.length > 0 && 'isShownOnMap' in tableData[0]
36
36
  ? [{ id: 'isShownOnMap', name: 'shown on map', sort: true, width: '20%' }]
37
37
  : []),
38
38
  ];
@@ -1,4 +1,5 @@
1
1
  import { type Meta, type StoryObj } from '@storybook/preact';
2
+ import { expect, waitFor, within } from '@storybook/test';
2
3
 
3
4
  import worldAtlas from './__mockData__/worldAtlas.json';
4
5
  import { AGGREGATED_ENDPOINT, LAPIS_URL } from '../../constants';
@@ -13,6 +14,21 @@ import './leafletStyleModifications.css';
13
14
  const meta: Meta<SequencesByLocationProps> = {
14
15
  title: 'Visualization/SequencesByLocation',
15
16
  component: SequencesByLocation,
17
+ argTypes: {
18
+ lapisFilter: { control: 'object' },
19
+ lapisLocationField: { control: { type: 'text' } },
20
+ enableMapNavigation: { control: { type: 'boolean' } },
21
+ width: { control: { type: 'text' } },
22
+ height: { control: { type: 'text' } },
23
+ views: {
24
+ options: ['map', 'table'],
25
+ control: { type: 'check' },
26
+ },
27
+ zoom: { control: { type: 'number' } },
28
+ offsetX: { control: { type: 'number' } },
29
+ offsetY: { control: { type: 'number' } },
30
+ pageSize: { control: 'object' },
31
+ },
16
32
  };
17
33
 
18
34
  export default meta;
@@ -51,7 +67,6 @@ export const Default: StoryObj<SequencesByLocationProps> = {
51
67
  },
52
68
  enableMapNavigation: false,
53
69
  width: '1100px',
54
- height: '800px',
55
70
  views: ['map', 'table'],
56
71
  zoom: 2,
57
72
  offsetX: 0,
@@ -77,6 +92,48 @@ export const Default: StoryObj<SequencesByLocationProps> = {
77
92
  },
78
93
  };
79
94
 
95
+ export const NoData: StoryObj<SequencesByLocationProps> = {
96
+ ...Default,
97
+ parameters: {
98
+ fetchMock: {
99
+ mocks: [
100
+ {
101
+ matcher: {
102
+ name: 'worldMap',
103
+ url: worldMapUrl,
104
+ },
105
+ response: {
106
+ status: 200,
107
+ body: worldAtlas,
108
+ },
109
+ },
110
+ {
111
+ matcher: {
112
+ name: 'aggregatedData',
113
+ url: AGGREGATED_ENDPOINT,
114
+ body: {
115
+ fields: ['country'],
116
+ dateFrom: '2022-01-01',
117
+ dateTo: '2022-04-01',
118
+ },
119
+ },
120
+ response: {
121
+ status: 200,
122
+ body: { data: [] },
123
+ },
124
+ },
125
+ ],
126
+ },
127
+ },
128
+ play: async ({ canvasElement }) => {
129
+ const canvas = within(canvasElement);
130
+
131
+ await waitFor(async () => {
132
+ await expect(canvas.getByText('No data available.')).toBeVisible();
133
+ });
134
+ },
135
+ };
136
+
80
137
  export const InvalidTopoJsonTopology: StoryObj<SequencesByLocationProps> = {
81
138
  ...Default,
82
139
  parameters: {
@@ -20,7 +20,9 @@ import { ResizeContainer } from '../components/resize-container';
20
20
  import { useQuery } from '../useQuery';
21
21
  import { mapSourceSchema } from './loadMapSource';
22
22
  import { lapisFilterSchema, views } from '../../types';
23
+ import { NoDataDisplay } from '../components/no-data-display';
23
24
  import Tabs from '../components/tabs';
25
+ import { getMaintainAspectRatio } from '../shared/charts/getMaintainAspectRatio';
24
26
 
25
27
  export const sequencesByLocationViewSchema = z.union([z.literal(views.map), z.literal(views.table)]);
26
28
  export type SequencesByLocationMapView = z.infer<typeof sequencesByLocationViewSchema>;
@@ -31,7 +33,7 @@ const sequencesByLocationPropsSchema = z.object({
31
33
  mapSource: mapSourceSchema.optional(),
32
34
  enableMapNavigation: z.boolean(),
33
35
  width: z.string(),
34
- height: z.string(),
36
+ height: z.string().optional(),
35
37
  views: z.array(sequencesByLocationViewSchema),
36
38
  zoom: z.number(),
37
39
  offsetX: z.number(),
@@ -75,6 +77,10 @@ const SequencesByLocationMapInner: FunctionComponent<SequencesByLocationProps> =
75
77
  throw error;
76
78
  }
77
79
 
80
+ if (data.tableData.length === 0) {
81
+ return <NoDataDisplay />;
82
+ }
83
+
78
84
  return <SequencesByLocationMapTabs data={data} originalComponentProps={props} />;
79
85
  };
80
86
 
@@ -87,6 +93,8 @@ const SequencesByLocationMapTabs: FunctionComponent<SequencesByLocationMapTabsPr
87
93
  originalComponentProps,
88
94
  data,
89
95
  }) => {
96
+ const maintainAspectRatio = getMaintainAspectRatio(originalComponentProps.height);
97
+
90
98
  const getTab = (view: SequencesByLocationMapView) => {
91
99
  switch (view) {
92
100
  case views.map: {
@@ -105,6 +113,7 @@ const SequencesByLocationMapTabs: FunctionComponent<SequencesByLocationMapTabsPr
105
113
  offsetX={originalComponentProps.offsetX}
106
114
  offsetY={originalComponentProps.offsetY}
107
115
  hasTableView={originalComponentProps.views.includes(views.table)}
116
+ maintainAspectRatio={maintainAspectRatio}
108
117
  />
109
118
  ),
110
119
  };
@@ -0,0 +1,13 @@
1
+ import { type PropsWithChildren } from 'react';
2
+
3
+ export function AspectRatio({ children, aspectRatio }: PropsWithChildren<{ aspectRatio?: number }>) {
4
+ if (aspectRatio === undefined) {
5
+ return children;
6
+ }
7
+
8
+ return (
9
+ <div class={`w-full relative`} style={{ paddingTop: `${aspectRatio}%` }}>
10
+ <div className='absolute inset-0'>{children}</div>
11
+ </div>
12
+ );
13
+ }
@@ -0,0 +1,3 @@
1
+ export function getMaintainAspectRatio(height: string | undefined) {
2
+ return height === undefined || height === '';
3
+ }
@@ -68,7 +68,6 @@ export const Default: StoryObj<StatisticsProps> = {
68
68
  division: 'Alabama',
69
69
  },
70
70
  width: '100%',
71
- height: '100%',
72
71
  },
73
72
  play: async ({ canvasElement }) => {
74
73
  const canvas = within(canvasElement);
@@ -13,7 +13,7 @@ import { useQuery } from '../useQuery';
13
13
 
14
14
  const statisticsPropsSchema = z.object({
15
15
  width: z.string(),
16
- height: z.string(),
16
+ height: z.string().optional(),
17
17
  numeratorFilter: lapisFilterSchema,
18
18
  denominatorFilter: lapisFilterSchema,
19
19
  });
@@ -62,17 +62,17 @@ type MetricDataTabsProps = {
62
62
  const MetricDataTabs: FunctionComponent<MetricDataTabsProps> = ({ data }) => {
63
63
  const { count, proportion } = data;
64
64
  return (
65
- <div className='flex flex-col sm:flex-row rounded-md border-2 border-gray-100'>
65
+ <div className='flex flex-col sm:flex-row rounded-md border-2 border-gray-100 min-w-[180px]'>
66
66
  <div className='stat'>
67
67
  <div className='stat-title'>Sequences</div>
68
68
  <div className='stat-value text-2xl sm:text-4xl'>{count.toLocaleString('en-us')}</div>
69
- <div className='stat-desc'>The total number of sequenced samples</div>
69
+ <div className='stat-desc text-wrap'>The total number of sequenced samples</div>
70
70
  </div>
71
71
 
72
72
  <div className='stat'>
73
73
  <div className='stat-title'>Overall proportion</div>
74
74
  <div className='stat-value text-2xl sm:text-4xl'>{formatProportion(proportion)}</div>
75
- <div className='stat-desc'>The proportion among all sequenced samples</div>
75
+ <div className='stat-desc text-wrap'>The proportion among all sequenced samples</div>
76
76
  </div>
77
77
  </div>
78
78
  );
@@ -40,7 +40,6 @@ export const Default: StoryObj<WastewaterMutationsOverTimeProps> = {
40
40
  ...Template,
41
41
  args: {
42
42
  width: '100%',
43
- height: '700px',
44
43
  lapisFilter: {},
45
44
  sequenceType: 'nucleotide',
46
45
  maxNumberOfGridRows: 100,
@@ -22,7 +22,7 @@ const wastewaterMutationOverTimeSchema = z.object({
22
22
  lapisFilter: lapisFilterSchema,
23
23
  sequenceType: sequenceTypeSchema,
24
24
  width: z.string(),
25
- height: z.string(),
25
+ height: z.string().optional(),
26
26
  maxNumberOfGridRows: z.number(),
27
27
  });
28
28
 
@@ -2,7 +2,7 @@ import type { FeatureCollection, GeometryObject } from 'geojson';
2
2
  import { describe, expect, test } from 'vitest';
3
3
 
4
4
  import { computeMapLocationData } from './computeMapLocationData';
5
- import type { GeoJsonFeatureProperties } from '../preact/map/loadMapSource';
5
+ import type { GeoJsonFeatureProperties } from '../preact/sequencesByLocation/loadMapSource';
6
6
 
7
7
  const lapisLocationField = 'locationField';
8
8
 
@@ -1,7 +1,7 @@
1
1
  import type { Feature, FeatureCollection, GeometryObject } from 'geojson';
2
2
 
3
3
  import type { AggregateData } from './queryAggregateData';
4
- import type { GeoJsonFeatureProperties } from '../preact/map/loadMapSource';
4
+ import type { GeoJsonFeatureProperties } from '../preact/sequencesByLocation/loadMapSource';
5
5
 
6
6
  export type FeatureData = { proportion: number; count: number };
7
7
 
@@ -1,6 +1,6 @@
1
1
  import { computeMapLocationData } from './computeMapLocationData';
2
2
  import { queryAggregateData } from './queryAggregateData';
3
- import { loadMapSource, type MapSource } from '../preact/map/loadMapSource';
3
+ import { loadMapSource, type MapSource } from '../preact/sequencesByLocation/loadMapSource';
4
4
  import type { LapisFilter } from '../types';
5
5
 
6
6
  export async function querySequencesByLocationData(
@@ -27,7 +27,7 @@ export type {
27
27
  RelativeGrowthAdvantageProps,
28
28
  } from './preact/relativeGrowthAdvantage/relative-growth-advantage';
29
29
  export type { StatisticsProps } from './preact/statistic/statistics';
30
- export type { MapSource } from './preact/map/loadMapSource';
30
+ export type { MapSource } from './preact/sequencesByLocation/loadMapSource';
31
31
 
32
32
  export type { ConfidenceIntervalMethod } from './preact/shared/charts/confideceInterval';
33
33
 
@@ -8,7 +8,7 @@ import { lapisContext } from './lapis-context';
8
8
  import { referenceGenomeContext } from './reference-genome-context';
9
9
  import { type ReferenceGenome } from '../lapisApi/ReferenceGenome';
10
10
  import { LapisUrlContextProvider } from '../preact/LapisUrlContext';
11
- import { ReferenceGenomeContext } from '../preact/ReferenceGenomeContext';
11
+ import { INITIAL_REFERENCE_GENOMES, ReferenceGenomeContext } from '../preact/ReferenceGenomeContext';
12
12
  import minMaxPercentSliderCss from '../preact/components/min-max-percent-slider.css?inline';
13
13
  import tailwindStyle from '../styles/tailwind.css?inline';
14
14
 
@@ -40,10 +40,7 @@ export abstract class PreactLitAdapter extends ReactiveElement {
40
40
  * This value will automatically be injected by the parent `gs-app` component.
41
41
  */
42
42
  @consume({ context: referenceGenomeContext, subscribe: true })
43
- referenceGenome: ReferenceGenome = {
44
- nucleotideSequences: [],
45
- genes: [],
46
- };
43
+ referenceGenome: ReferenceGenome = INITIAL_REFERENCE_GENOMES;
47
44
 
48
45
  override update(changedProperties: PropertyValues) {
49
46
  const vdom = (
@@ -5,7 +5,10 @@ import { Meta } from '@storybook/blocks';
5
5
  # Size of components
6
6
 
7
7
  All visualization and input components can be provided with a width prop (or height, when applicable) to control the size of the component.
8
- If not provided, the default width or height is used. In most cases, the default is a width of '100%' of its parent container and a predefined height.
8
+ If the width is not provided, the default is used. In most cases, the default is a width of '100%' of its parent container.
9
+ If the height is not set, the component takes up as much space as needed in the vertical direction.
10
+ For table views, this includes showing the complete table.
11
+ For diagrams, a fixed aspect ratio of 2:1 (width/height) is used.
9
12
 
10
13
  Both width and height can be set using the css units (e.g. 'px', 'em', 'rem', '%', 'vh', 'vw', etc.).
11
14
  By using '%', the size of the component can be controlled by the parent component.
@@ -9,6 +9,7 @@ import { lapisContext } from './lapis-context';
9
9
  import { referenceGenomeContext } from './reference-genome-context';
10
10
  import { type ReferenceGenome } from '../lapisApi/ReferenceGenome';
11
11
  import { fetchReferenceGenome } from '../lapisApi/lapisApi';
12
+ import { INITIAL_REFERENCE_GENOMES } from '../preact/ReferenceGenomeContext';
12
13
 
13
14
  const lapisUrlSchema = z.string().url();
14
15
 
@@ -43,10 +44,7 @@ export class AppComponent extends LitElement {
43
44
  * @internal
44
45
  */
45
46
  @provide({ context: referenceGenomeContext })
46
- referenceGenome: ReferenceGenome = {
47
- nucleotideSequences: [],
48
- genes: [],
49
- };
47
+ referenceGenome: ReferenceGenome = INITIAL_REFERENCE_GENOMES;
50
48
 
51
49
  /**
52
50
  * @internal
@@ -54,7 +54,7 @@ const meta: Meta<Required<AggregateProps>> = {
54
54
 
55
55
  export default meta;
56
56
 
57
- export const Table: StoryObj<Required<AggregateProps>> = {
57
+ export const Default: StoryObj<Required<AggregateProps>> = {
58
58
  render: (args) => html`
59
59
  <gs-app lapis="${LAPIS_URL}">
60
60
  <gs-aggregate
@@ -97,7 +97,6 @@ export const Table: StoryObj<Required<AggregateProps>> = {
97
97
  country: 'USA',
98
98
  },
99
99
  width: '100%',
100
- height: '700px',
101
100
  initialSortField: 'count',
102
101
  initialSortDirection: 'descending',
103
102
  pageSize: 10,
@@ -105,10 +104,18 @@ export const Table: StoryObj<Required<AggregateProps>> = {
105
104
  },
106
105
  };
107
106
 
107
+ export const WithFixedHeight: StoryObj<Required<AggregateProps>> = {
108
+ ...Default,
109
+ args: {
110
+ ...Default.args,
111
+ height: '700px',
112
+ },
113
+ };
114
+
108
115
  export const BarChartWithOneField: StoryObj<Required<AggregateProps>> = {
109
- ...Table,
116
+ ...Default,
110
117
  args: {
111
- ...Table.args,
118
+ ...Default.args,
112
119
  fields: ['division'],
113
120
  views: ['bar', 'table'],
114
121
  },
@@ -135,9 +142,9 @@ export const BarChartWithOneField: StoryObj<Required<AggregateProps>> = {
135
142
  };
136
143
 
137
144
  export const BarChartWithTwoFields: StoryObj<Required<AggregateProps>> = {
138
- ...Table,
145
+ ...Default,
139
146
  args: {
140
- ...Table.args,
147
+ ...Default.args,
141
148
  fields: ['division', 'nextstrainClade'],
142
149
  lapisFilter: {
143
150
  country: 'Germany',
@@ -75,7 +75,7 @@ export class AggregateComponent extends PreactLitAdapterWithGridJsStyles {
75
75
  * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/components-size-of-components--docs for more information.
76
76
  */
77
77
  @property({ type: String })
78
- height: string = '700px';
78
+ height: string | undefined = undefined;
79
79
 
80
80
  /**
81
81
  * The field by which the table is initially sorted.
@@ -89,7 +89,6 @@ export const Default: StoryObj<Required<MutationComparisonProps>> = {
89
89
  sequenceType: 'nucleotide',
90
90
  views: ['table', 'venn'],
91
91
  width: '100%',
92
- height: '700px',
93
92
  pageSize: 10,
94
93
  },
95
94
  parameters: {
@@ -162,3 +161,11 @@ export const VennDiagram: StoryObj<Required<MutationComparisonProps>> = {
162
161
  });
163
162
  },
164
163
  };
164
+
165
+ export const WithFixedHeight: StoryObj<Required<MutationComparisonProps>> = {
166
+ ...Default,
167
+ args: {
168
+ ...Default.args,
169
+ height: '700px',
170
+ },
171
+ };
@@ -79,7 +79,7 @@ export class MutationComparisonComponent extends PreactLitAdapterWithGridJsStyle
79
79
  * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/components-size-of-components--docs for more information.
80
80
  */
81
81
  @property({ type: String })
82
- height: string = '700px';
82
+ height: string | undefined = undefined;
83
83
 
84
84
  /**
85
85
  * The maximum number of rows to display in the table view.
@@ -16,6 +16,7 @@ const codeExample = String.raw`
16
16
  height='700px'
17
17
  granularity="month"
18
18
  lapisDateField="date"
19
+ displayMutations='["A23403G","C241T"]'
19
20
  ></gs-mutations-over-time>`;
20
21
 
21
22
  const meta: Meta<Required<MutationsOverTimeProps>> = {
@@ -38,15 +39,17 @@ const meta: Meta<Required<MutationsOverTimeProps>> = {
38
39
  control: { type: 'radio' },
39
40
  },
40
41
  lapisDateField: { control: 'text' },
42
+ displayMutations: { control: 'object' },
43
+ initialMeanProportionInterval: { control: 'object' },
41
44
  },
42
45
  args: {
43
46
  lapisFilter: { pangoLineage: 'JN.1*', dateFrom: '2024-01-15', dateTo: '2024-07-10' },
44
47
  sequenceType: 'nucleotide',
45
48
  views: ['grid'],
46
49
  width: '100%',
47
- height: '700px',
48
50
  granularity: 'month',
49
51
  lapisDateField: 'date',
52
+ initialMeanProportionInterval: { min: 0.05, max: 0.9 },
50
53
  },
51
54
  parameters: withComponentDocs({
52
55
  componentDocs: {
@@ -72,6 +75,8 @@ const Template: StoryObj<Required<MutationsOverTimeProps>> = {
72
75
  .height=${args.height}
73
76
  .granularity=${args.granularity}
74
77
  .lapisDateField=${args.lapisDateField}
78
+ .displayMutations=${args.displayMutations}
79
+ .initialMeanProportionInterval=${args.initialMeanProportionInterval}
75
80
  ></gs-mutations-over-time>
76
81
  </gs-app>
77
82
  `,
@@ -82,6 +87,15 @@ export const ByMonth: StoryObj<Required<MutationsOverTimeProps>> = {
82
87
  ...Template,
83
88
  };
84
89
 
90
+ // This test uses mock data: defaultMockData.ts (through mutationOverTimeWorker.mock.ts)
91
+ export const ByMonthWithFilterOnDisplayedMutations: StoryObj<Required<MutationsOverTimeProps>> = {
92
+ ...Template,
93
+ args: {
94
+ ...Template.args,
95
+ displayMutations: ['A19722G', 'G21641T', 'T21653-'],
96
+ },
97
+ };
98
+
85
99
  // This test uses mock data: byWeek.ts (through mutationOverTimeWorker.mock.ts)
86
100
  export const ByWeek: StoryObj<Required<MutationsOverTimeProps>> = {
87
101
  ...Template,
@@ -111,3 +125,12 @@ export const HideProportionOnSmallScreen: StoryObj<Required<MutationsOverTimePro
111
125
  width: '300px',
112
126
  },
113
127
  };
128
+
129
+ // This test uses mock data: defaultMockData.ts (through mutationOverTimeWorker.mock.ts)
130
+ export const WithFixedHeight: StoryObj<Required<MutationsOverTimeProps>> = {
131
+ ...Template,
132
+ args: {
133
+ ...Template,
134
+ height: '700px',
135
+ },
136
+ };
@@ -29,6 +29,10 @@ import { PreactLitAdapterWithGridJsStyles } from '../PreactLitAdapterWithGridJsS
29
29
  *
30
30
  * The number of rows is limited to 100.
31
31
  * If there are more, the component will only show 100 mutations and notify the user.
32
+ *
33
+ * Users can filter the displayed rows by mean proportion via a slider in the toolbar.
34
+ * The mean proportion of each row is calculated by LAPIS over the whole data range that the component displays.
35
+ * The initial mean proportion can be set via `initialMeanProportionInterval`.
32
36
  */
33
37
  @customElement('gs-mutations-over-time')
34
38
  export class MutationsOverTimeComponent extends PreactLitAdapterWithGridJsStyles {
@@ -69,7 +73,7 @@ export class MutationsOverTimeComponent extends PreactLitAdapterWithGridJsStyles
69
73
  * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/components-size-of-components--docs for more information.
70
74
  */
71
75
  @property({ type: String })
72
- height: string = '700px';
76
+ height: string | undefined = undefined;
73
77
 
74
78
  /**
75
79
  * The granularity of the time axis.
@@ -87,6 +91,20 @@ export class MutationsOverTimeComponent extends PreactLitAdapterWithGridJsStyles
87
91
  @property({ type: String })
88
92
  lapisDateField: string = 'date';
89
93
 
94
+ /**
95
+ * If provided, only the given mutations will be displayed.
96
+ * The mutations must be provided in the exact format as they would be displayed by the component.
97
+ */
98
+ @property({ type: Array })
99
+ displayMutations: string[] | undefined = undefined;
100
+
101
+ /**
102
+ * The initial proportion interval for the grid view.
103
+ * The values must be between 0 and 1, inclusive.
104
+ */
105
+ @property({ type: Object })
106
+ initialMeanProportionInterval: { min: number; max: number } = { min: 0.05, max: 0.9 };
107
+
90
108
  override render() {
91
109
  return (
92
110
  <MutationsOverTime
@@ -97,6 +115,8 @@ export class MutationsOverTimeComponent extends PreactLitAdapterWithGridJsStyles
97
115
  height={this.height}
98
116
  granularity={this.granularity}
99
117
  lapisDateField={this.lapisDateField}
118
+ displayMutations={this.displayMutations}
119
+ initialMeanProportionInterval={this.initialMeanProportionInterval}
100
120
  />
101
121
  );
102
122
  }
@@ -135,4 +155,13 @@ type GranularityMatches = Expect<
135
155
  type LapisDateFieldMatches = Expect<
136
156
  Equals<typeof MutationsOverTimeComponent.prototype.lapisDateField, MutationsOverTimeProps['lapisDateField']>
137
157
  >;
158
+ type DisplayMutationsMatches = Expect<
159
+ Equals<typeof MutationsOverTimeComponent.prototype.displayMutations, MutationsOverTimeProps['displayMutations']>
160
+ >;
161
+ type InitialMeanProportionIntervalMatches = Expect<
162
+ Equals<
163
+ typeof MutationsOverTimeComponent.prototype.initialMeanProportionInterval,
164
+ MutationsOverTimeProps['initialMeanProportionInterval']
165
+ >
166
+ >;
138
167
  /* eslint-enable @typescript-eslint/no-unused-vars, no-unused-vars */
@@ -54,7 +54,6 @@ const meta: Meta<Required<MutationsProps>> = {
54
54
  sequenceType: 'nucleotide',
55
55
  views: ['grid', 'table', 'insertions'],
56
56
  width: '100%',
57
- height: '700px',
58
57
  pageSize: 10,
59
58
  },
60
59
  parameters: withComponentDocs({
@@ -189,3 +188,11 @@ export const OnInsertionsTab: StoryObj<Required<MutationsProps>> = {
189
188
  await fireEvent.click(canvas.getByRole('button', { name: 'Insertions' }));
190
189
  },
191
190
  };
191
+
192
+ export const WithFixedHeight: StoryObj<Required<MutationsProps>> = {
193
+ ...Default,
194
+ args: {
195
+ ...Default.args,
196
+ height: '700px',
197
+ },
198
+ };
@@ -111,7 +111,7 @@ export class MutationsComponent extends PreactLitAdapterWithGridJsStyles {
111
111
  * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/components-size-of-components--docs for more information.
112
112
  */
113
113
  @property({ type: String })
114
- height: string = '700px';
114
+ height: string | undefined = undefined;
115
115
 
116
116
  /**
117
117
  * The maximum number of rows to display in the table view.
@@ -38,6 +38,9 @@ const meta: Meta<NumberSequencesOverTimeProps> = {
38
38
  control: { type: 'check' },
39
39
  },
40
40
  pageSize: { control: 'object' },
41
+ height: {
42
+ control: 'text',
43
+ },
41
44
  },
42
45
  parameters: withComponentDocs({
43
46
  componentDocs: {
@@ -73,7 +76,6 @@ const Template: StoryObj<NumberSequencesOverTimeProps> = {
73
76
  ],
74
77
  lapisDateField: 'date',
75
78
  width: '100%',
76
- height: '700px',
77
79
  smoothingWindow: 0,
78
80
  granularity: 'month',
79
81
  pageSize: 10,
@@ -239,3 +241,11 @@ export const TwoDatasetsWithNonOverlappingDates: StoryObj<NumberSequencesOverTim
239
241
  },
240
242
  },
241
243
  };
244
+
245
+ export const WithFixedHeight: StoryObj<NumberSequencesOverTimeProps> = {
246
+ ...Template,
247
+ args: {
248
+ ...Template.args,
249
+ height: '700px',
250
+ },
251
+ };
@@ -72,7 +72,7 @@ export class NumberSequencesOverTimeComponent extends PreactLitAdapterWithGridJs
72
72
  * Visit https://genspectrum.github.io/dashboard-components/?path=/docs/components-size-of-components--docs for more information.
73
73
  */
74
74
  @property({ type: String })
75
- height: string = '700px';
75
+ height: string | undefined = undefined;
76
76
 
77
77
  /**
78
78
  * The granularity of the time axis.