@genspectrum/dashboard-components 0.13.6 → 0.13.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/custom-elements.json +28 -28
- package/dist/components.d.ts +19 -21
- package/dist/components.js +348 -231
- package/dist/components.js.map +1 -1
- package/dist/style.css +20 -5
- package/dist/util.d.ts +18 -18
- package/package.json +1 -1
- package/src/preact/components/tabs.tsx +3 -5
- package/src/preact/mutationFilter/ExampleMutation.tsx +68 -0
- package/src/preact/mutationFilter/mutation-filter-info.tsx +179 -112
- package/src/preact/mutationFilter/mutation-filter.tsx +10 -5
- package/src/preact/mutationsOverTime/mutations-over-time-grid.tsx +26 -4
- package/src/preact/wastewater/mutationsOverTime/wastewater-mutations-over-time.stories.tsx +2 -6
- package/src/preact/wastewater/mutationsOverTime/wastewater-mutations-over-time.tsx +1 -1
- package/src/web-components/{app.stories.ts → gs-app.stories.ts} +1 -1
- package/src/web-components/{app.ts → gs-app.ts} +2 -2
- package/src/web-components/index.ts +1 -1
- package/src/web-components/input/gs-date-range-selector.stories.ts +1 -1
- package/src/web-components/input/gs-lineage-filter.stories.ts +1 -1
- package/src/web-components/input/gs-location-filter.stories.ts +1 -1
- package/src/web-components/input/gs-mutation-filter.stories.ts +2 -2
- package/src/web-components/input/gs-text-input.stories.ts +1 -1
- package/src/web-components/visualization/gs-aggregate.stories.ts +1 -1
- package/src/web-components/visualization/gs-mutation-comparison.stories.ts +1 -1
- package/src/web-components/visualization/gs-mutations-over-time.stories.ts +1 -1
- package/src/web-components/visualization/gs-mutations.stories.ts +1 -1
- package/src/web-components/visualization/gs-number-sequences-over-time.stories.ts +1 -1
- package/src/web-components/visualization/gs-prevalence-over-time.stories.ts +1 -1
- package/src/web-components/visualization/gs-relative-growth-advantage.stories.ts +1 -1
- package/src/web-components/visualization/gs-sequences-by-location.stories.ts +1 -1
- package/src/web-components/visualization/gs-statistics.stories.ts +1 -1
- package/src/web-components/wastewaterVisualization/gs-wastewater-mutations-over-time.stories.ts +4 -1
- package/src/web-components/wastewaterVisualization/gs-wastewater-mutations-over-time.tsx +6 -2
- package/standalone-bundle/dashboard-components.js +5073 -5014
- package/standalone-bundle/dashboard-components.js.map +1 -1
- package/standalone-bundle/style.css +1 -1
package/custom-elements.json
CHANGED
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@@ -62,7 +62,13 @@
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},
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{
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"kind": "javascript-module",
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"path": "src/web-components/
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"path": "src/web-components/errorHandling.mdx",
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"declarations": [],
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"exports": []
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},
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{
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"kind": "javascript-module",
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"path": "src/web-components/gs-app.stories.ts",
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"declarations": [
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{
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"kind": "variable",
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"name": "default",
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"declaration": {
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"name": "meta",
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"module": "src/web-components/app.stories.ts"
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"module": "src/web-components/gs-app.stories.ts"
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}
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},
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{
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"name": "Default",
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"declaration": {
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"name": "Default",
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"module": "src/web-components/app.stories.ts"
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"module": "src/web-components/gs-app.stories.ts"
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}
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},
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{
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"name": "WithNoLapisUrl",
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"declaration": {
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"name": "WithNoLapisUrl",
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"module": "src/web-components/app.stories.ts"
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"module": "src/web-components/gs-app.stories.ts"
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}
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{
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"name": "DelayFetchingReferenceGenome",
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"declaration": {
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"name": "DelayFetchingReferenceGenome",
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"module": "src/web-components/app.stories.ts"
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"module": "src/web-components/gs-app.stories.ts"
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}
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{
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"name": "FailsToFetchReferenceGenome",
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"declaration": {
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"name": "FailsToFetchReferenceGenome",
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"module": "src/web-components/app.stories.ts"
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"module": "src/web-components/gs-app.stories.ts"
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}
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},
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{
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"name": "gs-app-display",
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"declaration": {
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"name": "AppDisplay",
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"module": "src/web-components/app.stories.ts"
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"module": "src/web-components/gs-app.stories.ts"
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}
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}
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]
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{
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"kind": "javascript-module",
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"path": "src/web-components/app.ts",
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"path": "src/web-components/gs-app.ts",
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"declarations": [
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{
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"kind": "class",
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"description": "## Context\n\nThis component provides the main application context.\nAll other `gs-*` components must be (possibly nested) children of this component.\nIt makes use of the [Lit Context](https://lit.dev/docs/data/context/) to\n- provide the URL to the LAPIS instance to all its children\n- fetch the reference genomes from LAPIS and provide it to all its children\n\nThis will show an error message if the reference genome cannot be fetched\n(e.g., due to an invalid LAPIS URL).\n\n## Shadow DOM\n\nThis component does __not__ use a shadow DOM. Children of this component will be rendered directly in the light DOM.",
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"name": "
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"name": "AppComponent",
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"members": [
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{
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"kind": "field",
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"exports": [
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{
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"kind": "js",
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"name": "
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"name": "AppComponent",
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"declaration": {
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"name": "
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"module": "src/web-components/app.ts"
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"name": "AppComponent",
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"module": "src/web-components/gs-app.ts"
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}
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},
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{
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"kind": "custom-element-definition",
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"name": "gs-app",
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"declaration": {
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"name": "
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"module": "src/web-components/app.ts"
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"name": "AppComponent",
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"module": "src/web-components/gs-app.ts"
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}
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}
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]
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},
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{
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"kind": "javascript-module",
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"path": "src/web-components/errorHandling.mdx",
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"declarations": [],
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"exports": []
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},
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{
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"kind": "javascript-module",
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"path": "src/web-components/index.ts",
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"exports": [
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{
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"kind": "js",
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"name": "
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"name": "AppComponent",
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"declaration": {
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"name": "
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"module": "./app
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"name": "AppComponent",
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"module": "./gs-app"
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}
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"type": {
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"text": "StoryObj<MutationFilterProps>"
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},
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"default": "{ ...Template, args: { ...Template.args, initialValue: ['seg1:123T', 'gene2:56', 'ins_seg2:78:AAA'], }, parameters: { fetchMock: { mocks: [ { matcher: { name: 'referenceGenome', url: REFERENCE_GENOME_ENDPOINT, }, response: { status: 200, body: { nucleotideSequences: [ { name: 'seg1', sequence: 'dummy', }, { name: 'seg2', sequence: 'dummy', }, ], genes: [ { name: 'gene1', sequence: 'dummy', }, { name: 'gene2', sequence: 'dummy', }, ], }, }, options: { overwriteRoutes: false, }, }, ], }, }, play: async ({ canvasElement }) => { const canvas = await withinShadowRoot(canvasElement, 'gs-mutation-filter'); const inputField = () => canvas.getByPlaceholderText('Enter a mutation', { exact: false }); await waitFor(() => { const placeholderText = inputField().getAttribute('placeholder'); expect(placeholderText).toEqual( 'Enter a mutation (e.g. seg1:
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"default": "{ ...Template, args: { ...Template.args, initialValue: ['seg1:123T', 'gene2:56', 'ins_seg2:78:AAA'], }, parameters: { fetchMock: { mocks: [ { matcher: { name: 'referenceGenome', url: REFERENCE_GENOME_ENDPOINT, }, response: { status: 200, body: { nucleotideSequences: [ { name: 'seg1', sequence: 'dummy', }, { name: 'seg2', sequence: 'dummy', }, ], genes: [ { name: 'gene1', sequence: 'dummy', }, { name: 'gene2', sequence: 'dummy', }, ], }, }, options: { overwriteRoutes: false, }, }, ], }, }, play: async ({ canvasElement }) => { const canvas = await withinShadowRoot(canvasElement, 'gs-mutation-filter'); const inputField = () => canvas.getByPlaceholderText('Enter a mutation', { exact: false }); await waitFor(() => { const placeholderText = inputField().getAttribute('placeholder'); expect(placeholderText).toEqual( 'Enter a mutation (e.g. seg1:23T, ins_seg1:10462:A, gene1:57Q, ins_gene1:31:N)', ); }); await waitFor(() => { expect(canvas.getByText('seg1:123T')).toBeVisible(); expect(canvas.getByText('gene2:56')).toBeVisible(); return expect(canvas.getByText('ins_seg2:78:AAA')).toBeVisible(); }); }, }"
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"type": {
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"text": "Meta<WastewaterMutationsOverTimeProps & { infoText: string }>"
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"default": "{ title: 'Wastewater visualization/Wastewater mutations over time', component: 'gs-wastewater-mutations-over-time', argTypes: { lapisFilter: { control: 'object' }, sequenceType: { options: ['nucleotide', 'amino acid'], control: { type: 'radio' }, }, width: { control: 'text' }, height: { control: 'text' }, }, args: { lapisFilter: { versionStatus: 'LATEST_VERSION', isRevocation: false }, sequenceType: 'nucleotide', width: '100%', height: '700px', infoText: 'Some info text', }, parameters: withComponentDocs({ componentDocs: { opensShadowDom: true, expectsChildren: false, codeExample, }, fetchMock: {}, }), tags: ['autodocs'], }"
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"default": "{ title: 'Wastewater visualization/Wastewater mutations over time', component: 'gs-wastewater-mutations-over-time', argTypes: { lapisFilter: { control: 'object' }, sequenceType: { options: ['nucleotide', 'amino acid'], control: { type: 'radio' }, }, width: { control: 'text' }, height: { control: 'text' }, }, args: { lapisFilter: { versionStatus: 'LATEST_VERSION', isRevocation: false }, sequenceType: 'nucleotide', width: '100%', height: '700px', infoText: 'Some info text', maxNumberOfGridRows: 100, }, parameters: withComponentDocs({ componentDocs: { opensShadowDom: true, expectsChildren: false, codeExample, }, fetchMock: {}, }), tags: ['autodocs'], }"
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"text": "StoryObj<WastewaterMutationsOverTimeProps & { infoText: string }>"
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"default": "{ render: (args) => html` <gs-app lapis=\"${WISE_LAPIS_URL}\"> <gs-wastewater-mutations-over-time .lapisFilter=${args.lapisFilter} .sequenceType=${args.sequenceType} .width=${args.width} .height=${args.height} > <span slot=\"infoText\">${args.infoText}</span> </gs-wastewater-mutations-over-time> </gs-app> `, parameters: { fetchMock: { mocks: [ { matcher: { name: 'details', url: WISE_DETAILS_ENDPOINT, body: { fields: ['date', 'location', 'nucleotideMutationFrequency', 'aminoAcidMutationFrequency'], versionStatus: 'LATEST_VERSION', isRevocation: false, }, }, response: { status: 200, body: details, }, }, ], }, }, }"
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"default": "{ render: (args) => html` <gs-app lapis=\"${WISE_LAPIS_URL}\"> <gs-wastewater-mutations-over-time .lapisFilter=${args.lapisFilter} .sequenceType=${args.sequenceType} .width=${args.width} .height=${args.height} .maxNumberOfGridRows=${args.maxNumberOfGridRows} > <span slot=\"infoText\">${args.infoText}</span> </gs-wastewater-mutations-over-time> </gs-app> `, parameters: { fetchMock: { mocks: [ { matcher: { name: 'details', url: WISE_DETAILS_ENDPOINT, body: { fields: ['date', 'location', 'nucleotideMutationFrequency', 'aminoAcidMutationFrequency'], versionStatus: 'LATEST_VERSION', isRevocation: false, }, }, response: { status: 200, body: details, }, }, ], }, }, }"
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}
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}
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],
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package/dist/components.d.ts
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'gs-mutations-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
|
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|
}
|
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|
}
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}
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@@ -1466,7 +1464,7 @@ declare global {
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declare global {
|
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interface HTMLElementTagNameMap {
|
|
1469
|
-
'gs-
|
|
1467
|
+
'gs-statistics': StatisticsComponent;
|
|
1470
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|
}
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|
1471
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|
}
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|
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|
|
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@@ -1474,7 +1472,7 @@ declare global {
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declare global {
|
|
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namespace JSX {
|
|
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interface IntrinsicElements {
|
|
1477
|
-
'gs-
|
|
1475
|
+
'gs-statistics': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
|
|
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|
}
|
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}
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}
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@@ -1482,7 +1480,7 @@ declare global {
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|
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|
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declare global {
|
|
1484
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|
interface HTMLElementTagNameMap {
|
|
1485
|
-
'gs-
|
|
1483
|
+
'gs-sequences-by-location': SequencesByLocationComponent;
|
|
1486
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|
}
|
|
1487
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|
}
|
|
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|
|
|
@@ -1490,7 +1488,7 @@ declare global {
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|
|
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declare global {
|
|
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namespace JSX {
|
|
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|
interface IntrinsicElements {
|
|
1493
|
-
'gs-
|
|
1491
|
+
'gs-sequences-by-location': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
|
|
1494
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|
}
|
|
1495
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|
}
|
|
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|
}
|
|
@@ -1553,10 +1551,10 @@ declare global {
|
|
|
1553
1551
|
|
|
1554
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|
declare global {
|
|
1555
1553
|
interface HTMLElementTagNameMap {
|
|
1556
|
-
'gs-
|
|
1554
|
+
'gs-mutation-filter': MutationFilterComponent;
|
|
1557
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|
}
|
|
1558
1556
|
interface HTMLElementEventMap {
|
|
1559
|
-
'gs-
|
|
1557
|
+
'gs-mutation-filter-changed': CustomEvent<MutationsFilter>;
|
|
1560
1558
|
}
|
|
1561
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|
}
|
|
1562
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|
|
|
@@ -1564,7 +1562,7 @@ declare global {
|
|
|
1564
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|
declare global {
|
|
1565
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|
namespace JSX {
|
|
1566
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|
interface IntrinsicElements {
|
|
1567
|
-
'gs-
|
|
1565
|
+
'gs-mutation-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
|
|
1568
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|
}
|
|
1569
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|
}
|
|
1570
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|
}
|
|
@@ -1572,10 +1570,10 @@ declare global {
|
|
|
1572
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|
|
|
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|
declare global {
|
|
1574
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|
interface HTMLElementTagNameMap {
|
|
1575
|
-
'gs-
|
|
1573
|
+
'gs-text-input': TextInputComponent;
|
|
1576
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|
}
|
|
1577
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|
interface HTMLElementEventMap {
|
|
1578
|
-
'gs-
|
|
1576
|
+
'gs-text-input-changed': TextInputChangedEvent;
|
|
1579
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|
}
|
|
1580
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|
}
|
|
1581
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|
|
|
@@ -1583,7 +1581,7 @@ declare global {
|
|
|
1583
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|
declare global {
|
|
1584
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|
namespace JSX {
|
|
1585
1583
|
interface IntrinsicElements {
|
|
1586
|
-
'gs-
|
|
1584
|
+
'gs-text-input': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
|
|
1587
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|
}
|
|
1588
1586
|
}
|
|
1589
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|
}
|
|
@@ -1591,10 +1589,10 @@ declare global {
|
|
|
1591
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|
|
|
1592
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|
declare global {
|
|
1593
1591
|
interface HTMLElementTagNameMap {
|
|
1594
|
-
'gs-
|
|
1592
|
+
'gs-lineage-filter': LineageFilterComponent;
|
|
1595
1593
|
}
|
|
1596
1594
|
interface HTMLElementEventMap {
|
|
1597
|
-
'gs-
|
|
1595
|
+
'gs-lineage-filter-changed': LineageFilterChangedEvent;
|
|
1598
1596
|
}
|
|
1599
1597
|
}
|
|
1600
1598
|
|
|
@@ -1602,7 +1600,7 @@ declare global {
|
|
|
1602
1600
|
declare global {
|
|
1603
1601
|
namespace JSX {
|
|
1604
1602
|
interface IntrinsicElements {
|
|
1605
|
-
'gs-
|
|
1603
|
+
'gs-lineage-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
|
|
1606
1604
|
}
|
|
1607
1605
|
}
|
|
1608
1606
|
}
|