@genspectrum/dashboard-components 0.11.5 → 0.11.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (41) hide show
  1. package/custom-elements.json +92 -6
  2. package/dist/assets/{mutationOverTimeWorker-CWneD7i5.js.map → mutationOverTimeWorker-DTv93Ere.js.map} +1 -1
  3. package/dist/components.d.ts +67 -19
  4. package/dist/components.js +301 -90
  5. package/dist/components.js.map +1 -1
  6. package/dist/style.css +3 -0
  7. package/dist/util.d.ts +53 -22
  8. package/package.json +1 -1
  9. package/src/preact/aggregatedData/__mockData__/aggregatedWith1Field.json +399 -0
  10. package/src/preact/aggregatedData/__mockData__/aggregatedWith2Fields.json +1771 -0
  11. package/src/preact/aggregatedData/aggregate-bar-chart.tsx +177 -0
  12. package/src/preact/aggregatedData/aggregate-table.tsx +24 -2
  13. package/src/preact/aggregatedData/aggregate.stories.tsx +61 -2
  14. package/src/preact/aggregatedData/aggregate.tsx +18 -6
  15. package/src/preact/mutations/__mockData__/baselineNucleotideMutations.json +337412 -0
  16. package/src/preact/mutations/__mockData__/overallVariantCount.json +14 -0
  17. package/src/preact/mutations/getMutationsTableData.spec.ts +20 -3
  18. package/src/preact/mutations/getMutationsTableData.ts +37 -2
  19. package/src/preact/mutations/mutations-table.tsx +47 -27
  20. package/src/preact/mutations/mutations.stories.tsx +41 -9
  21. package/src/preact/mutations/mutations.tsx +22 -6
  22. package/src/preact/mutations/queryMutations.ts +28 -8
  23. package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutationsByDay.ts +11077 -3062
  24. package/src/preact/mutationsOverTime/__mockData__/byWeek.ts +3883 -6606
  25. package/src/preact/mutationsOverTime/__mockData__/defaultMockData.ts +17624 -2203
  26. package/src/preact/mutationsOverTime/mutations-over-time-grid.tsx +1 -1
  27. package/src/preact/mutationsOverTime/mutations-over-time.tsx +1 -1
  28. package/src/preact/shared/charts/colors.ts +1 -1
  29. package/src/query/queryAggregateData.spec.ts +16 -109
  30. package/src/query/queryAggregateData.ts +2 -12
  31. package/src/query/queryGeneralStatistics.ts +2 -2
  32. package/src/query/queryMutationsOverTime.spec.ts +144 -4
  33. package/src/query/queryMutationsOverTime.ts +17 -1
  34. package/src/web-components/visualization/gs-aggregate.stories.ts +90 -20
  35. package/src/web-components/visualization/gs-aggregate.tsx +20 -0
  36. package/src/web-components/visualization/gs-mutations.stories.ts +62 -4
  37. package/src/web-components/visualization/gs-mutations.tsx +44 -0
  38. package/standalone-bundle/assets/{mutationOverTimeWorker-x1ipPFL0.js.map → mutationOverTimeWorker-DEybsZ5r.js.map} +1 -1
  39. package/standalone-bundle/dashboard-components.js +4136 -3956
  40. package/standalone-bundle/dashboard-components.js.map +1 -1
  41. package/standalone-bundle/style.css +1 -1
package/dist/style.css CHANGED
@@ -2946,6 +2946,9 @@ input.tab:checked + .tab-content,
2946
2946
  .static {
2947
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  position: static;
2948
2948
  }
2949
+ .fixed {
2950
+ position: fixed;
2951
+ }
2949
2952
  .absolute {
2950
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  position: absolute;
2951
2954
  }
package/dist/util.d.ts CHANGED
@@ -20,12 +20,13 @@ declare const aggregatePropsSchema: default_2.ZodObject<{
20
20
  aminoAcidInsertions?: string[] | undefined;
21
21
  }>>;
22
22
  fields: default_2.ZodArray<default_2.ZodString, "many">;
23
- views: default_2.ZodArray<default_2.ZodLiteral<"table">, "many">;
23
+ views: default_2.ZodArray<default_2.ZodUnion<[default_2.ZodLiteral<"table">, default_2.ZodLiteral<"bar">]>, "many">;
24
24
  initialSortField: default_2.ZodString;
25
25
  initialSortDirection: default_2.ZodUnion<[default_2.ZodLiteral<"ascending">, default_2.ZodLiteral<"descending">]>;
26
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  pageSize: default_2.ZodUnion<[default_2.ZodBoolean, default_2.ZodNumber]>;
27
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  width: default_2.ZodString;
28
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  height: default_2.ZodString;
29
+ maxNumberOfBars: default_2.ZodNumber;
29
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  }, "strip", default_2.ZodTypeAny, {
30
31
  lapisFilter: Record<string, string | number | boolean | string[] | null | undefined> & {
31
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  nucleotideMutations?: string[] | undefined;
@@ -37,9 +38,10 @@ declare const aggregatePropsSchema: default_2.ZodObject<{
37
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  height: string;
38
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  width: string;
39
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  pageSize: number | boolean;
40
- views: "table"[];
41
+ views: ("table" | "bar")[];
41
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  initialSortField: string;
42
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  initialSortDirection: "ascending" | "descending";
44
+ maxNumberOfBars: number;
43
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  }, {
44
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  lapisFilter: Record<string, string | number | boolean | string[] | null | undefined> & {
45
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  nucleotideMutations?: string[] | undefined;
@@ -51,14 +53,15 @@ declare const aggregatePropsSchema: default_2.ZodObject<{
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  height: string;
52
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  width: string;
53
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  pageSize: number | boolean;
54
- views: "table"[];
56
+ views: ("table" | "bar")[];
55
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  initialSortField: string;
56
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  initialSortDirection: "ascending" | "descending";
59
+ maxNumberOfBars: number;
57
60
  }>;
58
61
 
59
62
  export declare type AggregateView = default_2.infer<typeof aggregateViewSchema>;
60
63
 
61
- declare const aggregateViewSchema: default_2.ZodLiteral<"table">;
64
+ declare const aggregateViewSchema: default_2.ZodUnion<[default_2.ZodLiteral<"table">, default_2.ZodLiteral<"bar">]>;
62
65
 
63
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  export declare type AxisMax = default_2.infer<typeof axisMaxSchema>;
64
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@@ -290,6 +293,22 @@ declare const mutationsPropsSchema: default_2.ZodObject<{
290
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  nucleotideInsertions?: string[] | undefined;
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  aminoAcidInsertions?: string[] | undefined;
292
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  }>>;
296
+ baselineLapisFilter: default_2.ZodOptional<default_2.ZodIntersection<default_2.ZodRecord<default_2.ZodString, default_2.ZodUnion<[default_2.ZodString, default_2.ZodArray<default_2.ZodString, "many">, default_2.ZodNumber, default_2.ZodNull, default_2.ZodBoolean, default_2.ZodUndefined]>>, default_2.ZodObject<{
297
+ nucleotideMutations: default_2.ZodOptional<default_2.ZodArray<default_2.ZodString, "many">>;
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+ aminoAcidMutations: default_2.ZodOptional<default_2.ZodArray<default_2.ZodString, "many">>;
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+ nucleotideInsertions: default_2.ZodOptional<default_2.ZodArray<default_2.ZodString, "many">>;
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+ aminoAcidInsertions: default_2.ZodOptional<default_2.ZodArray<default_2.ZodString, "many">>;
301
+ }, "strip", default_2.ZodTypeAny, {
302
+ nucleotideMutations?: string[] | undefined;
303
+ aminoAcidMutations?: string[] | undefined;
304
+ nucleotideInsertions?: string[] | undefined;
305
+ aminoAcidInsertions?: string[] | undefined;
306
+ }, {
307
+ nucleotideMutations?: string[] | undefined;
308
+ aminoAcidMutations?: string[] | undefined;
309
+ nucleotideInsertions?: string[] | undefined;
310
+ aminoAcidInsertions?: string[] | undefined;
311
+ }>>>;
293
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  sequenceType: default_2.ZodUnion<[default_2.ZodLiteral<"nucleotide">, default_2.ZodLiteral<"amino acid">]>;
294
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  views: default_2.ZodArray<default_2.ZodUnion<[default_2.ZodLiteral<"table">, default_2.ZodLiteral<"grid">, default_2.ZodLiteral<"insertions">]>, "many">;
295
314
  pageSize: default_2.ZodUnion<[default_2.ZodBoolean, default_2.ZodNumber]>;
@@ -307,6 +326,12 @@ declare const mutationsPropsSchema: default_2.ZodObject<{
307
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  pageSize: number | boolean;
308
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  sequenceType: "nucleotide" | "amino acid";
309
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  views: ("table" | "grid" | "insertions")[];
329
+ baselineLapisFilter?: (Record<string, string | number | boolean | string[] | null | undefined> & {
330
+ nucleotideMutations?: string[] | undefined;
331
+ aminoAcidMutations?: string[] | undefined;
332
+ nucleotideInsertions?: string[] | undefined;
333
+ aminoAcidInsertions?: string[] | undefined;
334
+ }) | undefined;
310
335
  }, {
311
336
  lapisFilter: Record<string, string | number | boolean | string[] | null | undefined> & {
312
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  nucleotideMutations?: string[] | undefined;
@@ -319,6 +344,12 @@ declare const mutationsPropsSchema: default_2.ZodObject<{
319
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  pageSize: number | boolean;
320
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  sequenceType: "nucleotide" | "amino acid";
321
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  views: ("table" | "grid" | "insertions")[];
347
+ baselineLapisFilter?: (Record<string, string | number | boolean | string[] | null | undefined> & {
348
+ nucleotideMutations?: string[] | undefined;
349
+ aminoAcidMutations?: string[] | undefined;
350
+ nucleotideInsertions?: string[] | undefined;
351
+ aminoAcidInsertions?: string[] | undefined;
352
+ }) | undefined;
322
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  }>;
323
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324
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  export declare type MutationsView = default_2.infer<typeof mutationsViewSchema>;
@@ -867,7 +898,7 @@ declare global {
867
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868
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  declare global {
869
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  interface HTMLElementTagNameMap {
870
- 'gs-mutations-over-time': MutationsOverTimeComponent;
901
+ 'gs-number-sequences-over-time': NumberSequencesOverTimeComponent;
871
902
  }
872
903
  }
873
904
 
@@ -875,7 +906,7 @@ declare global {
875
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  declare global {
876
907
  namespace JSX {
877
908
  interface IntrinsicElements {
878
- 'gs-mutations-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
909
+ 'gs-number-sequences-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
879
910
  }
880
911
  }
881
912
  }
@@ -883,7 +914,7 @@ declare global {
883
914
 
884
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  declare global {
885
916
  interface HTMLElementTagNameMap {
886
- 'gs-number-sequences-over-time': NumberSequencesOverTimeComponent;
917
+ 'gs-sequences-by-location': SequencesByLocationComponent;
887
918
  }
888
919
  }
889
920
 
@@ -891,7 +922,7 @@ declare global {
891
922
  declare global {
892
923
  namespace JSX {
893
924
  interface IntrinsicElements {
894
- 'gs-number-sequences-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
925
+ 'gs-sequences-by-location': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
895
926
  }
896
927
  }
897
928
  }
@@ -899,7 +930,7 @@ declare global {
899
930
 
900
931
  declare global {
901
932
  interface HTMLElementTagNameMap {
902
- 'gs-sequences-by-location': SequencesByLocationComponent;
933
+ 'gs-statistics': StatisticsComponent;
903
934
  }
904
935
  }
905
936
 
@@ -907,7 +938,7 @@ declare global {
907
938
  declare global {
908
939
  namespace JSX {
909
940
  interface IntrinsicElements {
910
- 'gs-sequences-by-location': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
941
+ 'gs-statistics': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
911
942
  }
912
943
  }
913
944
  }
@@ -915,7 +946,7 @@ declare global {
915
946
 
916
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  declare global {
917
948
  interface HTMLElementTagNameMap {
918
- 'gs-statistics': StatisticsComponent;
949
+ 'gs-mutations-over-time': MutationsOverTimeComponent;
919
950
  }
920
951
  }
921
952
 
@@ -923,7 +954,7 @@ declare global {
923
954
  declare global {
924
955
  namespace JSX {
925
956
  interface IntrinsicElements {
926
- 'gs-statistics': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
957
+ 'gs-mutations-over-time': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
927
958
  }
928
959
  }
929
960
  }
@@ -931,11 +962,10 @@ declare global {
931
962
 
932
963
  declare global {
933
964
  interface HTMLElementTagNameMap {
934
- 'gs-date-range-selector': DateRangeSelectorComponent;
965
+ 'gs-text-input': TextInputComponent;
935
966
  }
936
967
  interface HTMLElementEventMap {
937
- 'gs-date-range-filter-changed': CustomEvent<Record<string, string>>;
938
- 'gs-date-range-option-changed': DateRangeOptionChangedEvent;
968
+ 'gs-text-input-changed': CustomEvent<Record<string, string>>;
939
969
  }
940
970
  }
941
971
 
@@ -943,7 +973,7 @@ declare global {
943
973
  declare global {
944
974
  namespace JSX {
945
975
  interface IntrinsicElements {
946
- 'gs-date-range-selector': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
976
+ 'gs-text-input': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
947
977
  }
948
978
  }
949
979
  }
@@ -951,10 +981,11 @@ declare global {
951
981
 
952
982
  declare global {
953
983
  interface HTMLElementTagNameMap {
954
- 'gs-location-filter': LocationFilterComponent;
984
+ 'gs-date-range-selector': DateRangeSelectorComponent;
955
985
  }
956
986
  interface HTMLElementEventMap {
957
- 'gs-location-changed': CustomEvent<Record<string, string>>;
987
+ 'gs-date-range-filter-changed': CustomEvent<Record<string, string>>;
988
+ 'gs-date-range-option-changed': DateRangeOptionChangedEvent;
958
989
  }
959
990
  }
960
991
 
@@ -962,7 +993,7 @@ declare global {
962
993
  declare global {
963
994
  namespace JSX {
964
995
  interface IntrinsicElements {
965
- 'gs-location-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
996
+ 'gs-date-range-selector': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
966
997
  }
967
998
  }
968
999
  }
@@ -970,10 +1001,10 @@ declare global {
970
1001
 
971
1002
  declare global {
972
1003
  interface HTMLElementTagNameMap {
973
- 'gs-text-input': TextInputComponent;
1004
+ 'gs-location-filter': LocationFilterComponent;
974
1005
  }
975
1006
  interface HTMLElementEventMap {
976
- 'gs-text-input-changed': CustomEvent<Record<string, string>>;
1007
+ 'gs-location-changed': CustomEvent<Record<string, string>>;
977
1008
  }
978
1009
  }
979
1010
 
@@ -981,7 +1012,7 @@ declare global {
981
1012
  declare global {
982
1013
  namespace JSX {
983
1014
  interface IntrinsicElements {
984
- 'gs-text-input': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
1015
+ 'gs-location-filter': DetailedHTMLProps<HTMLAttributes<HTMLElement>, HTMLElement>;
985
1016
  }
986
1017
  }
987
1018
  }
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@genspectrum/dashboard-components",
3
- "version": "0.11.5",
3
+ "version": "0.11.7",
4
4
  "description": "GenSpectrum web components for building dashboards",
5
5
  "type": "module",
6
6
  "license": "AGPL-3.0-only",
@@ -0,0 +1,399 @@
1
+ {
2
+ "data": [
3
+ {
4
+ "count": 1793,
5
+ "division": "Virgin Islands"
6
+ },
7
+ {
8
+ "count": 80581,
9
+ "division": "Colorado"
10
+ },
11
+ {
12
+ "count": 5,
13
+ "division": "American Samoa"
14
+ },
15
+ {
16
+ "count": 3462,
17
+ "division": "Northern Mariana Islands"
18
+ },
19
+ {
20
+ "count": 29845,
21
+ "division": "Oklahoma"
22
+ },
23
+ {
24
+ "count": 2582,
25
+ "division": "Wyoming"
26
+ },
27
+ {
28
+ "count": 18733,
29
+ "division": "Kentucky"
30
+ },
31
+ {
32
+ "count": 88,
33
+ "division": "New York City"
34
+ },
35
+ {
36
+ "count": 30814,
37
+ "division": "Arkansas"
38
+ },
39
+ {
40
+ "count": 8932,
41
+ "division": "Maine"
42
+ },
43
+ {
44
+ "count": 10710,
45
+ "division": "Puerto Rico"
46
+ },
47
+ {
48
+ "count": 11354,
49
+ "division": "Kansas"
50
+ },
51
+ {
52
+ "count": 15336,
53
+ "division": "Alaska"
54
+ },
55
+ {
56
+ "count": 1,
57
+ "division": "Sp"
58
+ },
59
+ {
60
+ "count": 12017,
61
+ "division": "Washington DC"
62
+ },
63
+ {
64
+ "count": 27043,
65
+ "division": "Vermont"
66
+ },
67
+ {
68
+ "count": 30166,
69
+ "division": "Nevada"
70
+ },
71
+ {
72
+ "count": 22443,
73
+ "division": "Utah"
74
+ },
75
+ {
76
+ "count": 85817,
77
+ "division": "Pennsylvania"
78
+ },
79
+ {
80
+ "count": 892,
81
+ "division": "Guam"
82
+ },
83
+ {
84
+ "count": 2,
85
+ "division": "Virginia Beach"
86
+ },
87
+ {
88
+ "count": 13808,
89
+ "division": "New Hampshire"
90
+ },
91
+ {
92
+ "count": 9,
93
+ "division": "Fairfax"
94
+ },
95
+ {
96
+ "count": 22914,
97
+ "division": "Rhode Island"
98
+ },
99
+ {
100
+ "count": 78889,
101
+ "division": "Illinois"
102
+ },
103
+ {
104
+ "count": 23674,
105
+ "division": "Nebraska"
106
+ },
107
+ {
108
+ "count": 1,
109
+ "division": "Beltsville"
110
+ },
111
+ {
112
+ "count": 141180,
113
+ "division": "Minnesota"
114
+ },
115
+ {
116
+ "count": 35292,
117
+ "division": "Indiana"
118
+ },
119
+ {
120
+ "count": 8949,
121
+ "division": "Montana"
122
+ },
123
+ {
124
+ "count": 88026,
125
+ "division": "Virginia"
126
+ },
127
+ {
128
+ "count": 199883,
129
+ "division": "Florida"
130
+ },
131
+ {
132
+ "count": 9733,
133
+ "division": "Delaware"
134
+ },
135
+ {
136
+ "count": 1,
137
+ "division": "Fishersville"
138
+ },
139
+ {
140
+ "count": 22250,
141
+ "division": "Louisiana"
142
+ },
143
+ {
144
+ "count": 6,
145
+ "division": "Springfield"
146
+ },
147
+ {
148
+ "count": 2,
149
+ "division": "Afton"
150
+ },
151
+ {
152
+ "count": 1,
153
+ "division": "Mt Solon"
154
+ },
155
+ {
156
+ "count": 27784,
157
+ "division": "Iowa"
158
+ },
159
+ {
160
+ "count": 30026,
161
+ "division": "Connecticut"
162
+ },
163
+ {
164
+ "count": 9255,
165
+ "division": "South Dakota"
166
+ },
167
+ {
168
+ "count": 14,
169
+ "division": "Annandale"
170
+ },
171
+ {
172
+ "count": 2,
173
+ "division": "Burke"
174
+ },
175
+ {
176
+ "count": 124361,
177
+ "division": "New York"
178
+ },
179
+ {
180
+ "count": 36230,
181
+ "division": "West Virginia"
182
+ },
183
+ {
184
+ "count": 11,
185
+ "division": "Falls Church"
186
+ },
187
+ {
188
+ "count": 3,
189
+ "division": "Arlington"
190
+ },
191
+ {
192
+ "count": 3,
193
+ "division": "Louisana"
194
+ },
195
+ {
196
+ "count": 13,
197
+ "division": "Temple"
198
+ },
199
+ {
200
+ "count": 10,
201
+ "division": "Louisiana/Caddo Parish"
202
+ },
203
+ {
204
+ "count": 6,
205
+ "division": "Alexandria"
206
+ },
207
+ {
208
+ "count": 1,
209
+ "division": "Louisiana/Bossier Parish"
210
+ },
211
+ {
212
+ "count": 45448,
213
+ "division": "Wisconsin"
214
+ },
215
+ {
216
+ "count": 2,
217
+ "division": "Un"
218
+ },
219
+ {
220
+ "count": 3,
221
+ "division": "Mclean"
222
+ },
223
+ {
224
+ "count": 6192,
225
+ "division": "Hawaii"
226
+ },
227
+ {
228
+ "count": 142321,
229
+ "division": "Washington"
230
+ },
231
+ {
232
+ "count": 1,
233
+ "division": "Chantilly"
234
+ },
235
+ {
236
+ "count": 2,
237
+ "division": "Crozet"
238
+ },
239
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