@genspectrum/dashboard-components 0.10.1 → 0.10.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/custom-elements.json +23 -23
- package/dist/assets/{mutationOverTimeWorker-CvZg52rf.js.map → mutationOverTimeWorker-Di6yP1e6.js.map} +1 -1
- package/dist/components.d.ts +50 -48
- package/dist/components.js +151 -62
- package/dist/components.js.map +1 -1
- package/dist/{utilEntrypoint-g4DsyhU7.js → dateRangeOption-du8H7LWu.js} +33 -2
- package/dist/dateRangeOption-du8H7LWu.js.map +1 -0
- package/dist/util.d.ts +101 -59
- package/dist/util.js +3 -2
- package/package.json +1 -1
- package/src/preact/components/color-scale-selector.tsx +7 -3
- package/src/preact/components/error-boundary.tsx +39 -5
- package/src/preact/components/error-display.tsx +40 -5
- package/src/preact/dateRangeSelector/computeInitialValues.spec.ts +8 -2
- package/src/preact/dateRangeSelector/computeInitialValues.ts +6 -0
- package/src/preact/dateRangeSelector/date-range-selector.stories.tsx +16 -2
- package/src/preact/dateRangeSelector/date-range-selector.tsx +20 -15
- package/src/preact/dateRangeSelector/dateRangeOption.ts +10 -5
- package/src/preact/lineageFilter/lineage-filter.stories.tsx +18 -4
- package/src/preact/lineageFilter/lineage-filter.tsx +15 -10
- package/src/preact/locationFilter/location-filter.stories.tsx +14 -0
- package/src/preact/locationFilter/location-filter.tsx +15 -10
- package/src/preact/mutationComparison/mutation-comparison-venn.tsx +17 -18
- package/src/preact/mutationComparison/mutation-comparison.tsx +18 -12
- package/src/preact/mutationsOverTime/__mockData__/aminoAcidMutationsByDay.ts +1326 -9341
- package/src/preact/mutationsOverTime/__mockData__/byWeek.ts +615 -4920
- package/src/preact/mutationsOverTime/__mockData__/defaultMockData.ts +2203 -17624
- package/src/preact/mutationsOverTime/mutations-over-time-grid.tsx +16 -8
- package/src/preact/mutationsOverTime/mutations-over-time.tsx +1 -3
- package/src/preact/shared/stories/expectInvalidAttributesErrorMessage.ts +13 -0
- package/src/preact/webWorkers/useWebWorker.ts +8 -4
- package/src/query/queryMutationsOverTime.spec.ts +12 -27
- package/src/query/queryMutationsOverTime.ts +2 -6
- package/src/types.ts +19 -6
- package/src/utilEntrypoint.ts +8 -0
- package/src/utils/map2d.spec.ts +10 -10
- package/src/utils/map2d.ts +10 -10
- package/src/web-components/input/gs-date-range-selector.stories.ts +2 -2
- package/src/web-components/input/gs-date-range-selector.tsx +3 -3
- package/src/web-components/input/gs-lineage-filter.tsx +1 -1
- package/src/web-components/input/gs-location-filter.tsx +2 -2
- package/src/web-components/visualization/gs-aggregate.tsx +2 -2
- package/standalone-bundle/assets/{mutationOverTimeWorker-CypX_PYM.js.map → mutationOverTimeWorker-cIyshfj_.js.map} +1 -1
- package/standalone-bundle/dashboard-components.js +6668 -6580
- package/standalone-bundle/dashboard-components.js.map +1 -1
- package/dist/utilEntrypoint-g4DsyhU7.js.map +0 -1
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import flatpickr from 'flatpickr';
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import 'flatpickr/dist/flatpickr.min.css';
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import { useEffect, useRef, useState } from 'preact/hooks';
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import z from 'zod';
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import { computeInitialValues } from './computeInitialValues';
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import { toYYYYMMDD } from './dateConversion';
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import {
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import { DateRangeOptionChangedEvent, dateRangeOptionSchema, type DateRangeSelectOption } from './dateRangeOption';
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import { getDatesForSelectorValue, getSelectableOptions } from './selectableOptions';
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import { ErrorBoundary } from '../components/error-boundary';
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import { Select } from '../components/select';
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const customOption = 'Custom';
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const dateRangeSelectorInnerPropsSchema = z.object({
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dateRangeOptions: z.array(dateRangeOptionSchema),
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earliestDate: z.string().date(),
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initialValue: z.string().optional(),
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initialDateFrom: z.string().date().optional(),
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initialDateTo: z.string().date().optional(),
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dateColumn: z.string().min(1),
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});
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initialValue: string | undefined;
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initialDateFrom: string;
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initialDateTo: string;
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dateColumn: string;
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}
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const dateRangeSelectorPropsSchema = dateRangeSelectorInnerPropsSchema.extend({
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width: z.string(),
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});
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export
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export type DateRangeSelectorProps = z.infer<typeof dateRangeSelectorPropsSchema>;
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export type DateRangeSelectorInnerProps = z.infer<typeof dateRangeSelectorInnerPropsSchema>;
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export const DateRangeSelector = (props: DateRangeSelectorProps) => {
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const { width, ...innerProps } = props;
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const size = { width, height: '3rem' };
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return (
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<ErrorBoundary size={size} layout='horizontal'>
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<ErrorBoundary size={size} layout='horizontal' componentProps={props} schema={dateRangeSelectorPropsSchema}>
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<div style={{ width }}>
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<DateRangeSelectorInner {...innerProps} />
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</div>
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dateColumn,
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initialDateFrom,
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initialDateTo,
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}:
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}: DateRangeSelectorInnerProps) => {
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const initialValues = computeInitialValues(
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initialValue,
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initialDateFrom,
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import z from 'zod';
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import { toYYYYMMDD } from './dateConversion';
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/**
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* A date range option that can be used in the `gs-date-range-selector` component.
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*/
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export
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export const dateRangeOptionSchema = z.object({
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/** The label of the date range option that will be shown to the user */
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label: string
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label: z.string(),
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/**
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* The start date of the date range in the format `YYYY-MM-DD`.
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* If not set, the date range selector will default to the `earliestDate` property.
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*/
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dateFrom
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dateFrom: z.string().date().optional(),
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/**
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* The end date of the date range in the format `YYYY-MM-DD`.
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*/
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dateTo
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};
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dateTo: z.string().date().optional(),
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});
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export type DateRangeOption = z.infer<typeof dateRangeOptionSchema>;
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export type DateRangeSelectOption = string | { dateFrom: string; dateTo: string };
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export class DateRangeOptionChangedEvent extends CustomEvent<DateRangeSelectOption> {
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constructor(detail: DateRangeSelectOption) {
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super('gs-date-range-option-changed', {
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import { AGGREGATED_ENDPOINT, LAPIS_URL } from '../../constants';
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import aggregatedData from '../../preact/lineageFilter/__mockData__/aggregated.json';
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import { LapisUrlContext } from '../LapisUrlContext';
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import { expectInvalidAttributesErrorMessage } from '../shared/stories/expectInvalidAttributesErrorMessage';
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const meta: Meta = {
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title: 'Input/LineageFilter',
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],
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},
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},
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args: {
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lapisField: 'pangoLineage',
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placeholderText: 'Enter lineage',
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initialValue: '',
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width: '100%',
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},
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};
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export default meta;
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/>
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</LapisUrlContext.Provider>
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};
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export const WithNoLapisField: StoryObj<LineageFilterProps> = {
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...Default,
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args: {
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...Default.args,
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lapisField: '',
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},
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play: async ({ canvasElement, step }) => {
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step('expect error message', async () => {
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await expectInvalidAttributesErrorMessage(canvasElement, 'String must contain at least 1 character(s)');
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});
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};
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import z from 'zod';
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import { fetchLineageAutocompleteList } from './fetchLineageAutocompleteList';
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import { LapisUrlContext } from '../LapisUrlContext';
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import { ResizeContainer } from '../components/resize-container';
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import { useQuery } from '../useQuery';
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const lineageFilterInnerPropsSchema = z.object({
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lapisField: z.string().min(1),
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export type LineageFilterInnerProps = z.infer<typeof lineageFilterInnerPropsSchema>;
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export type LineageFilterProps = z.infer<typeof lineageFilterPropsSchema>;
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export const LineageFilter: FunctionComponent<LineageFilterProps> = (props) => {
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...Primary,
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},
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const values = sets.datasets[0].data[selectedDatasetIndex].values;
|
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58
|
-
const label = sets.datasets[0].data[selectedDatasetIndex].label;
|
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59
|
-
divRef.current!.innerText = `${label}: ${values.join(', ')}` || '';
|
|
60
|
-
}, [divRef, selectedDatasetIndex, sets]);
|
|
61
|
-
|
|
62
46
|
const config: ChartConfiguration = useMemo(
|
|
63
47
|
() => ({
|
|
64
48
|
type: 'venn',
|
|
@@ -119,7 +103,22 @@ export const MutationComparisonVenn: FunctionComponent<MutationComparisonVennPro
|
|
|
119
103
|
<div className='flex-1'>
|
|
120
104
|
<GsChart configuration={config} />
|
|
121
105
|
</div>
|
|
122
|
-
<
|
|
106
|
+
<p class='flex flex-wrap break-words m-2'>{getSelectedMutationsDescription(selectedDatasetIndex, sets)}</p>
|
|
123
107
|
</div>
|
|
124
108
|
);
|
|
125
109
|
};
|
|
110
|
+
|
|
111
|
+
const noElementSelectedMessage = 'You have no elements selected. Click in the venn diagram to select.';
|
|
112
|
+
|
|
113
|
+
function getSelectedMutationsDescription(
|
|
114
|
+
selectedDatasetIndex: number | null,
|
|
115
|
+
sets: ReturnType<typeof extractSets<string>>,
|
|
116
|
+
) {
|
|
117
|
+
if (selectedDatasetIndex === null) {
|
|
118
|
+
return noElementSelectedMessage;
|
|
119
|
+
}
|
|
120
|
+
|
|
121
|
+
const values = sets.datasets[0].data[selectedDatasetIndex].values;
|
|
122
|
+
const label = sets.datasets[0].data[selectedDatasetIndex].label;
|
|
123
|
+
return `${label}: ${values.join(', ')}` || '';
|
|
124
|
+
}
|
|
@@ -1,11 +1,17 @@
|
|
|
1
1
|
import { type FunctionComponent } from 'preact';
|
|
2
2
|
import { type Dispatch, type StateUpdater, useContext, useMemo, useState } from 'preact/hooks';
|
|
3
|
+
import z from 'zod';
|
|
3
4
|
|
|
4
5
|
import { getMutationComparisonTableData } from './getMutationComparisonTableData';
|
|
5
6
|
import { MutationComparisonTable } from './mutation-comparison-table';
|
|
6
7
|
import { MutationComparisonVenn } from './mutation-comparison-venn';
|
|
7
8
|
import { filterMutationData, type MutationData, queryMutationData } from './queryMutationData';
|
|
8
|
-
import {
|
|
9
|
+
import {
|
|
10
|
+
type MutationComparisonView,
|
|
11
|
+
mutationComparisonViewSchema,
|
|
12
|
+
namedLapisFilterSchema,
|
|
13
|
+
sequenceTypeSchema,
|
|
14
|
+
} from '../../types';
|
|
9
15
|
import { LapisUrlContext } from '../LapisUrlContext';
|
|
10
16
|
import { CsvDownloadButton } from '../components/csv-download-button';
|
|
11
17
|
import { ErrorBoundary } from '../components/error-boundary';
|
|
@@ -21,23 +27,23 @@ import { type DisplayedSegment, SegmentSelector, useDisplayedSegments } from '..
|
|
|
21
27
|
import Tabs from '../components/tabs';
|
|
22
28
|
import { useQuery } from '../useQuery';
|
|
23
29
|
|
|
24
|
-
|
|
30
|
+
const mutationComparisonPropsSchema = z.object({
|
|
31
|
+
width: z.string(),
|
|
32
|
+
height: z.string(),
|
|
33
|
+
lapisFilters: z.array(namedLapisFilterSchema).min(1),
|
|
34
|
+
sequenceType: sequenceTypeSchema,
|
|
35
|
+
views: z.array(mutationComparisonViewSchema),
|
|
36
|
+
pageSize: z.union([z.boolean(), z.number()]),
|
|
37
|
+
});
|
|
25
38
|
|
|
26
|
-
export
|
|
27
|
-
width: string;
|
|
28
|
-
height: string;
|
|
29
|
-
lapisFilters: NamedLapisFilter[];
|
|
30
|
-
sequenceType: SequenceType;
|
|
31
|
-
views: View[];
|
|
32
|
-
pageSize: boolean | number;
|
|
33
|
-
}
|
|
39
|
+
export type MutationComparisonProps = z.infer<typeof mutationComparisonPropsSchema>;
|
|
34
40
|
|
|
35
41
|
export const MutationComparison: FunctionComponent<MutationComparisonProps> = (componentProps) => {
|
|
36
42
|
const { width, height } = componentProps;
|
|
37
43
|
const size = { height, width };
|
|
38
44
|
|
|
39
45
|
return (
|
|
40
|
-
<ErrorBoundary size={size}>
|
|
46
|
+
<ErrorBoundary size={size} componentProps={componentProps} schema={mutationComparisonPropsSchema}>
|
|
41
47
|
<ResizeContainer size={size}>
|
|
42
48
|
<MutationComparisonInner {...componentProps} />
|
|
43
49
|
</ResizeContainer>
|
|
@@ -86,7 +92,7 @@ const MutationComparisonTabs: FunctionComponent<MutationComparisonTabsProps> = (
|
|
|
86
92
|
[data, displayedSegments, displayedMutationTypes],
|
|
87
93
|
);
|
|
88
94
|
|
|
89
|
-
const getTab = (view:
|
|
95
|
+
const getTab = (view: MutationComparisonView) => {
|
|
90
96
|
switch (view) {
|
|
91
97
|
case 'table':
|
|
92
98
|
return {
|