@genspectrum/dashboard-components 0.1.1

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Files changed (186) hide show
  1. package/LICENSE +661 -0
  2. package/README.md +109 -0
  3. package/custom-elements.json +1587 -0
  4. package/dist/dashboard-components.js +7322 -0
  5. package/dist/dashboard-components.js.map +1 -0
  6. package/dist/genspectrum-components.d.ts +298 -0
  7. package/dist/style.css +2930 -0
  8. package/package.json +109 -0
  9. package/src/constants.ts +6 -0
  10. package/src/index.ts +1 -0
  11. package/src/lapisApi/ReferenceGenome.ts +30 -0
  12. package/src/lapisApi/__mockData__/referenceGenome.json +58 -0
  13. package/src/lapisApi/lapisApi.ts +99 -0
  14. package/src/lapisApi/lapisTypes.ts +51 -0
  15. package/src/operator/Dataset.ts +3 -0
  16. package/src/operator/DivisionOperator.spec.ts +27 -0
  17. package/src/operator/DivisionOperator.ts +60 -0
  18. package/src/operator/FetchAggregatedOperator.ts +44 -0
  19. package/src/operator/FetchInsertionsOperator.ts +24 -0
  20. package/src/operator/FetchSubstitutionsOrDeletionsOperator.ts +49 -0
  21. package/src/operator/FillMissingOperator.spec.ts +26 -0
  22. package/src/operator/FillMissingOperator.ts +30 -0
  23. package/src/operator/GroupByAndSumOperator.spec.ts +26 -0
  24. package/src/operator/GroupByAndSumOperator.ts +26 -0
  25. package/src/operator/GroupByOperator.spec.ts +43 -0
  26. package/src/operator/GroupByOperator.ts +32 -0
  27. package/src/operator/MapOperator.spec.ts +13 -0
  28. package/src/operator/MapOperator.ts +16 -0
  29. package/src/operator/MockOperator.spec.ts +11 -0
  30. package/src/operator/MockOperator.ts +12 -0
  31. package/src/operator/Operator.ts +5 -0
  32. package/src/operator/SlidingOperator.spec.ts +52 -0
  33. package/src/operator/SlidingOperator.ts +23 -0
  34. package/src/operator/SortOperator.spec.ts +13 -0
  35. package/src/operator/SortOperator.ts +16 -0
  36. package/src/preact/LapisUrlContext.ts +3 -0
  37. package/src/preact/ReferenceGenomeContext.ts +5 -0
  38. package/src/preact/components/SegmentSelector.tsx +62 -0
  39. package/src/preact/components/chart.stories.tsx +42 -0
  40. package/src/preact/components/chart.tsx +32 -0
  41. package/src/preact/components/checkbox-selector.stories.tsx +56 -0
  42. package/src/preact/components/checkbox-selector.tsx +46 -0
  43. package/src/preact/components/confidence-interval-selector.tsx +45 -0
  44. package/src/preact/components/csv-download-button.stories.tsx +25 -0
  45. package/src/preact/components/csv-download-button.tsx +51 -0
  46. package/src/preact/components/error-display.stories.tsx +22 -0
  47. package/src/preact/components/error-display.tsx +5 -0
  48. package/src/preact/components/headline.stories.tsx +29 -0
  49. package/src/preact/components/headline.tsx +16 -0
  50. package/src/preact/components/info.stories.tsx +22 -0
  51. package/src/preact/components/info.tsx +16 -0
  52. package/src/preact/components/loading-display.stories.tsx +20 -0
  53. package/src/preact/components/loading-display.tsx +5 -0
  54. package/src/preact/components/min-max-percent-slider.css +40 -0
  55. package/src/preact/components/min-max-range-slider.tsx +95 -0
  56. package/src/preact/components/mutation-type-selector.tsx +30 -0
  57. package/src/preact/components/no-data-display.stories.tsx +20 -0
  58. package/src/preact/components/no-data-display.tsx +5 -0
  59. package/src/preact/components/percent-intput.tsx +49 -0
  60. package/src/preact/components/proportion-selector-dropdown.stories.tsx +66 -0
  61. package/src/preact/components/proportion-selector-dropdown.tsx +33 -0
  62. package/src/preact/components/proportion-selector.stories.tsx +81 -0
  63. package/src/preact/components/proportion-selector.tsx +43 -0
  64. package/src/preact/components/scaling-selector.stories.tsx +25 -0
  65. package/src/preact/components/scaling-selector.tsx +36 -0
  66. package/src/preact/components/select.stories.tsx +42 -0
  67. package/src/preact/components/select.tsx +21 -0
  68. package/src/preact/components/table.stories.tsx +24 -0
  69. package/src/preact/components/table.tsx +51 -0
  70. package/src/preact/components/tabs.stories.tsx +60 -0
  71. package/src/preact/components/tabs.tsx +49 -0
  72. package/src/preact/dateRangeSelector/date-range-selector.stories.tsx +32 -0
  73. package/src/preact/dateRangeSelector/date-range-selector.tsx +228 -0
  74. package/src/preact/dateRangeSelector/dateConversion.ts +8 -0
  75. package/src/preact/locationFilter/__mockData__/aggregated.json +775 -0
  76. package/src/preact/locationFilter/fetchAutocompletionList.spec.ts +36 -0
  77. package/src/preact/locationFilter/fetchAutocompletionList.ts +43 -0
  78. package/src/preact/locationFilter/location-filter.stories.tsx +50 -0
  79. package/src/preact/locationFilter/location-filter.tsx +112 -0
  80. package/src/preact/mutationComparison/__mockData__/nucleotideMutationsOtherVariant.json +295 -0
  81. package/src/preact/mutationComparison/__mockData__/nucleotideMutationsSomeVariant.json +304 -0
  82. package/src/preact/mutationComparison/fetchMutationData.spec.ts +118 -0
  83. package/src/preact/mutationComparison/getMutationComparisonTableData.spec.ts +125 -0
  84. package/src/preact/mutationComparison/getMutationComparisonTableData.ts +40 -0
  85. package/src/preact/mutationComparison/mutation-comparison-table.tsx +43 -0
  86. package/src/preact/mutationComparison/mutation-comparison-venn.tsx +122 -0
  87. package/src/preact/mutationComparison/mutation-comparison.stories.tsx +152 -0
  88. package/src/preact/mutationComparison/mutation-comparison.tsx +179 -0
  89. package/src/preact/mutationComparison/queryMutationData.ts +53 -0
  90. package/src/preact/mutationFilter/mutation-filter.stories.tsx +164 -0
  91. package/src/preact/mutationFilter/mutation-filter.tsx +268 -0
  92. package/src/preact/mutationFilter/parseAndValidateMutation.ts +54 -0
  93. package/src/preact/mutationFilter/parseMutation.spec.ts +150 -0
  94. package/src/preact/mutationFilter/sequenceTypeFromSegment.spec.ts +66 -0
  95. package/src/preact/mutationFilter/sequenceTypeFromSegment.ts +20 -0
  96. package/src/preact/mutations/__mockData__/nucleotideInsertions.json +252 -0
  97. package/src/preact/mutations/__mockData__/nucleotideMutations.json +880 -0
  98. package/src/preact/mutations/getInsertionsTableData.spec.ts +36 -0
  99. package/src/preact/mutations/getInsertionsTableData.ts +10 -0
  100. package/src/preact/mutations/getMutationsGridData.spec.ts +135 -0
  101. package/src/preact/mutations/getMutationsGridData.ts +92 -0
  102. package/src/preact/mutations/getMutationsTableData.spec.ts +94 -0
  103. package/src/preact/mutations/getMutationsTableData.ts +17 -0
  104. package/src/preact/mutations/mutations-grid.tsx +84 -0
  105. package/src/preact/mutations/mutations-insertions-table.tsx +33 -0
  106. package/src/preact/mutations/mutations-table.tsx +47 -0
  107. package/src/preact/mutations/mutations.stories.tsx +95 -0
  108. package/src/preact/mutations/mutations.tsx +192 -0
  109. package/src/preact/mutations/queryMutations.ts +55 -0
  110. package/src/preact/prevalenceOverTime/__mockData__/denominator.json +1700 -0
  111. package/src/preact/prevalenceOverTime/__mockData__/denominatorOneVariant.json +608 -0
  112. package/src/preact/prevalenceOverTime/__mockData__/numeratorEG.json +1560 -0
  113. package/src/preact/prevalenceOverTime/__mockData__/numeratorJN1.json +592 -0
  114. package/src/preact/prevalenceOverTime/__mockData__/numeratorOneVariant.json +604 -0
  115. package/src/preact/prevalenceOverTime/getPrevalenceOverTimeTableData.spec.ts +67 -0
  116. package/src/preact/prevalenceOverTime/getPrevalenceOverTimeTableData.ts +18 -0
  117. package/src/preact/prevalenceOverTime/prevalence-over-time-bar-chart.tsx +105 -0
  118. package/src/preact/prevalenceOverTime/prevalence-over-time-bubble-chart.tsx +86 -0
  119. package/src/preact/prevalenceOverTime/prevalence-over-time-line-chart.tsx +141 -0
  120. package/src/preact/prevalenceOverTime/prevalence-over-time-table.tsx +46 -0
  121. package/src/preact/prevalenceOverTime/prevalence-over-time.stories.tsx +165 -0
  122. package/src/preact/prevalenceOverTime/prevalence-over-time.tsx +202 -0
  123. package/src/preact/relativeGrowthAdvantage/__mockData__/denominator.json +376 -0
  124. package/src/preact/relativeGrowthAdvantage/__mockData__/numerator.json +332 -0
  125. package/src/preact/relativeGrowthAdvantage/relative-growth-advantage-chart.tsx +138 -0
  126. package/src/preact/relativeGrowthAdvantage/relative-growth-advantage.stories.tsx +71 -0
  127. package/src/preact/relativeGrowthAdvantage/relative-growth-advantage.tsx +136 -0
  128. package/src/preact/shared/charts/LogitScale.ts +48 -0
  129. package/src/preact/shared/charts/colors.ts +26 -0
  130. package/src/preact/shared/charts/confideceInterval.ts +29 -0
  131. package/src/preact/shared/charts/getYAxisScale.ts +16 -0
  132. package/src/preact/shared/charts/scales.ts +16 -0
  133. package/src/preact/shared/icons/DeleteIcon.tsx +17 -0
  134. package/src/preact/shared/sort/sortInsertions.spec.ts +47 -0
  135. package/src/preact/shared/sort/sortInsertions.ts +21 -0
  136. package/src/preact/shared/sort/sortMutationPositions.spec.ts +31 -0
  137. package/src/preact/shared/sort/sortMutationPositions.ts +14 -0
  138. package/src/preact/shared/sort/sortSubstitutionsAndDeletions.spec.ts +47 -0
  139. package/src/preact/shared/sort/sortSubstitutionsAndDeletions.ts +17 -0
  140. package/src/preact/shared/table/formatProportion.ts +3 -0
  141. package/src/preact/textInput/__mockData__/aggregated_hosts.json +24 -0
  142. package/src/preact/textInput/fetchAutocompleteList.ts +9 -0
  143. package/src/preact/textInput/text-input.stories.tsx +49 -0
  144. package/src/preact/textInput/text-input.tsx +73 -0
  145. package/src/preact/useQuery.ts +27 -0
  146. package/src/query/queryInsertions.ts +14 -0
  147. package/src/query/queryPrevalenceOverTime.ts +126 -0
  148. package/src/query/queryRelativeGrowthAdvantage.ts +131 -0
  149. package/src/query/querySubstitutionsOrDeletions.ts +19 -0
  150. package/src/styles/tailwind.css +3 -0
  151. package/src/styles/tailwind.d.ts +3 -0
  152. package/src/types.ts +23 -0
  153. package/src/utils/mutations.spec.ts +64 -0
  154. package/src/utils/mutations.ts +165 -0
  155. package/src/utils/temporal.spec.ts +97 -0
  156. package/src/utils/temporal.ts +348 -0
  157. package/src/utils/test-utils.ts +5 -0
  158. package/src/utils/type-utils.ts +15 -0
  159. package/src/utils/utils.spec.ts +16 -0
  160. package/src/utils/utils.ts +38 -0
  161. package/src/web-components/PreactLitAdapter.tsx +62 -0
  162. package/src/web-components/PreactLitAdapterWithGridJsStyles.tsx +12 -0
  163. package/src/web-components/app.ts +51 -0
  164. package/src/web-components/display/index.ts +4 -0
  165. package/src/web-components/display/mutation-comparison-component.stories.ts +138 -0
  166. package/src/web-components/display/mutation-comparison-component.tsx +31 -0
  167. package/src/web-components/display/mutations-component.stories.ts +107 -0
  168. package/src/web-components/display/mutations-component.tsx +27 -0
  169. package/src/web-components/display/prevalence-over-time-component.stories.ts +205 -0
  170. package/src/web-components/display/prevalence-over-time-component.tsx +46 -0
  171. package/src/web-components/display/relative-growth-advantage-component.stories.ts +89 -0
  172. package/src/web-components/display/relative-growth-advantage-component.tsx +37 -0
  173. package/src/web-components/index.ts +3 -0
  174. package/src/web-components/input/date-range-selector-component.stories.ts +53 -0
  175. package/src/web-components/input/date-range-selector-component.tsx +33 -0
  176. package/src/web-components/input/index.ts +4 -0
  177. package/src/web-components/input/location-filter-component.stories.ts +184 -0
  178. package/src/web-components/input/location-filter-component.tsx +68 -0
  179. package/src/web-components/input/location-filter.mdx +25 -0
  180. package/src/web-components/input/mutation-filter-component.stories.ts +97 -0
  181. package/src/web-components/input/mutation-filter-component.tsx +27 -0
  182. package/src/web-components/input/text-input-component.stories.ts +92 -0
  183. package/src/web-components/input/text-input-component.tsx +30 -0
  184. package/src/web-components/lapis-context.ts +3 -0
  185. package/src/web-components/reference-genome-context.ts +5 -0
  186. package/src/web-components/withinShadowRoot.story.ts +34 -0
package/src/preact/mutations/__mockData__/nucleotideInsertions.json ADDED
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