@genomicx/ui 0.9.0 → 0.9.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/index.d.ts +1 -0
- package/dist/index.js +225 -171
- package/dist/utils/parseSequence.d.ts +13 -0
- package/package.json +2 -1
package/dist/index.d.ts
CHANGED
|
@@ -16,4 +16,5 @@ export type { StatusBadgeProps, StatusBadgeVariant } from './components/StatusBa
|
|
|
16
16
|
export { loadWasmModule, createModuleInstance } from './wasm/loader';
|
|
17
17
|
export type { EmscriptenModule, WasmModuleFactory } from './wasm/types';
|
|
18
18
|
export { downloadBlob, downloadText, downloadBuffer } from './utils/download';
|
|
19
|
+
export { parseGenbankString, parseSequenceFile } from './utils/parseSequence';
|
|
19
20
|
export type { ProgressUpdate } from './types/progress';
|
package/dist/index.js
CHANGED
|
@@ -1,100 +1,100 @@
|
|
|
1
|
-
import { jsxs as
|
|
2
|
-
import { useState as
|
|
3
|
-
import { Link as
|
|
4
|
-
import
|
|
5
|
-
function
|
|
6
|
-
const [
|
|
1
|
+
import { jsxs as t, jsx as e, Fragment as f } from "react/jsx-runtime";
|
|
2
|
+
import { useState as x, useRef as y, useCallback as v } from "react";
|
|
3
|
+
import { Link as u } from "react-router-dom";
|
|
4
|
+
import N from "react-hot-toast";
|
|
5
|
+
function k({ disabled: n = !1 }) {
|
|
6
|
+
const [a, o] = x(
|
|
7
7
|
() => document.documentElement.getAttribute("data-theme") || "dark"
|
|
8
|
-
), r = (
|
|
9
|
-
o(
|
|
8
|
+
), r = (l) => {
|
|
9
|
+
o(l), document.documentElement.setAttribute("data-theme", l), localStorage.setItem("gx-theme", l);
|
|
10
10
|
};
|
|
11
|
-
return /* @__PURE__ */
|
|
11
|
+
return /* @__PURE__ */ t("div", { className: `gx-theme-toggle${n ? " disabled" : ""}`, title: n ? "Theme switching disabled" : void 0, children: [
|
|
12
12
|
/* @__PURE__ */ e(
|
|
13
13
|
"button",
|
|
14
14
|
{
|
|
15
|
-
onClick: () => !
|
|
16
|
-
className: `gx-theme-btn${
|
|
15
|
+
onClick: () => !n && r("dark"),
|
|
16
|
+
className: `gx-theme-btn${a === "dark" ? " active" : ""}`,
|
|
17
17
|
"aria-label": "Dark theme",
|
|
18
|
-
disabled:
|
|
18
|
+
disabled: n,
|
|
19
19
|
children: /* @__PURE__ */ e("svg", { className: "gx-theme-btn-icon", fill: "currentColor", viewBox: "0 0 20 20", children: /* @__PURE__ */ e("path", { d: "M17.293 13.293A8 8 0 016.707 2.707a8.001 8.001 0 1010.586 10.586z" }) })
|
|
20
20
|
}
|
|
21
21
|
),
|
|
22
22
|
/* @__PURE__ */ e(
|
|
23
23
|
"button",
|
|
24
24
|
{
|
|
25
|
-
onClick: () => !
|
|
26
|
-
className: `gx-theme-btn${
|
|
25
|
+
onClick: () => !n && r("light"),
|
|
26
|
+
className: `gx-theme-btn${a === "light" ? " active" : ""}`,
|
|
27
27
|
"aria-label": "Light theme",
|
|
28
|
-
disabled:
|
|
28
|
+
disabled: n,
|
|
29
29
|
children: /* @__PURE__ */ e("svg", { className: "gx-theme-btn-icon", fill: "currentColor", viewBox: "0 0 20 20", children: /* @__PURE__ */ e("path", { fillRule: "evenodd", d: "M10 2a1 1 0 011 1v1a1 1 0 11-2 0V3a1 1 0 011-1zm4 8a4 4 0 11-8 0 4 4 0 018 0zm-.464 4.95l.707.707a1 1 0 001.414-1.414l-.707-.707a1 1 0 00-1.414 1.414zm2.12-10.607a1 1 0 010 1.414l-.706.707a1 1 0 11-1.414-1.414l.707-.707a1 1 0 011.414 0zM17 11a1 1 0 100-2h-1a1 1 0 100 2h1zm-7 4a1 1 0 011 1v1a1 1 0 11-2 0v-1a1 1 0 011-1zM5.05 6.464A1 1 0 106.465 5.05l-.708-.707a1 1 0 00-1.414 1.414l.707.707zm1.414 8.486l-.707.707a1 1 0 01-1.414-1.414l.707-.707a1 1 0 011.414 1.414zM4 11a1 1 0 100-2H3a1 1 0 000 2h1z", clipRule: "evenodd" }) })
|
|
30
30
|
}
|
|
31
31
|
)
|
|
32
32
|
] });
|
|
33
33
|
}
|
|
34
|
-
const b = () => /* @__PURE__ */
|
|
34
|
+
const b = () => /* @__PURE__ */ t("svg", { className: "gx-nav-logo-icon", viewBox: "0 0 24 24", fill: "none", stroke: "var(--gx-accent)", strokeWidth: "2", children: [
|
|
35
35
|
/* @__PURE__ */ e("circle", { cx: "12", cy: "12", r: "10" }),
|
|
36
36
|
/* @__PURE__ */ e("circle", { cx: "12", cy: "12", r: "6" }),
|
|
37
37
|
/* @__PURE__ */ e("circle", { cx: "12", cy: "12", r: "2" })
|
|
38
38
|
] });
|
|
39
|
-
function
|
|
40
|
-
const [
|
|
41
|
-
return /* @__PURE__ */
|
|
42
|
-
/* @__PURE__ */ e("div", { className: "gx-nav-inner", children: /* @__PURE__ */
|
|
43
|
-
/* @__PURE__ */
|
|
39
|
+
function C({ appName: n, appSubtitle: a, version: o, icon: r, githubUrl: l, actions: s, mobileActions: c }) {
|
|
40
|
+
const [i, h] = x(!1);
|
|
41
|
+
return /* @__PURE__ */ t("nav", { className: "gx-nav", children: [
|
|
42
|
+
/* @__PURE__ */ e("div", { className: "gx-nav-inner", children: /* @__PURE__ */ t("div", { className: "gx-nav-row", children: [
|
|
43
|
+
/* @__PURE__ */ t(u, { to: "/", className: "gx-nav-logo", children: [
|
|
44
44
|
r ?? /* @__PURE__ */ e(b, {}),
|
|
45
|
-
/* @__PURE__ */
|
|
46
|
-
/* @__PURE__ */
|
|
47
|
-
|
|
48
|
-
o && /* @__PURE__ */
|
|
45
|
+
/* @__PURE__ */ t("div", { children: [
|
|
46
|
+
/* @__PURE__ */ t("h1", { className: "gx-nav-logo-name", children: [
|
|
47
|
+
n,
|
|
48
|
+
o && /* @__PURE__ */ t("span", { className: "gx-nav-logo-version", children: [
|
|
49
49
|
"v",
|
|
50
50
|
o
|
|
51
51
|
] })
|
|
52
52
|
] }),
|
|
53
|
-
|
|
53
|
+
a && /* @__PURE__ */ e("p", { className: "gx-nav-logo-sub", children: a })
|
|
54
54
|
] })
|
|
55
55
|
] }),
|
|
56
|
-
/* @__PURE__ */
|
|
57
|
-
|
|
58
|
-
/* @__PURE__ */ e(
|
|
59
|
-
|
|
56
|
+
/* @__PURE__ */ t("div", { className: "gx-nav-desktop", children: [
|
|
57
|
+
s,
|
|
58
|
+
/* @__PURE__ */ e(u, { to: "/about", className: "gx-nav-link", children: "About" }),
|
|
59
|
+
l && /* @__PURE__ */ t("a", { href: l, target: "_blank", rel: "noopener noreferrer", className: "gx-nav-link", children: [
|
|
60
60
|
"GitHub",
|
|
61
61
|
/* @__PURE__ */ e("svg", { className: "gx-nav-link-icon", fill: "none", stroke: "currentColor", viewBox: "0 0 24 24", children: /* @__PURE__ */ e("path", { strokeLinecap: "round", strokeLinejoin: "round", strokeWidth: 2, d: "M10 6H6a2 2 0 00-2 2v10a2 2 0 002 2h10a2 2 0 002-2v-4M14 4h6m0 0v6m0-6L10 14" }) })
|
|
62
62
|
] }),
|
|
63
|
-
/* @__PURE__ */ e(
|
|
63
|
+
/* @__PURE__ */ e(k, {})
|
|
64
64
|
] }),
|
|
65
|
-
/* @__PURE__ */
|
|
66
|
-
/* @__PURE__ */ e(
|
|
67
|
-
/* @__PURE__ */ e("button", { onClick: () =>
|
|
65
|
+
/* @__PURE__ */ t("div", { className: "gx-nav-mobile-toggle", children: [
|
|
66
|
+
/* @__PURE__ */ e(k, {}),
|
|
67
|
+
/* @__PURE__ */ e("button", { onClick: () => h(!i), className: "gx-nav-hamburger", "aria-label": "Toggle menu", children: i ? /* @__PURE__ */ e("svg", { className: "gx-nav-hamburger-icon", fill: "none", stroke: "currentColor", viewBox: "0 0 24 24", children: /* @__PURE__ */ e("path", { strokeLinecap: "round", strokeLinejoin: "round", strokeWidth: 2, d: "M6 18L18 6M6 6l12 12" }) }) : /* @__PURE__ */ e("svg", { className: "gx-nav-hamburger-icon", fill: "none", stroke: "currentColor", viewBox: "0 0 24 24", children: /* @__PURE__ */ e("path", { strokeLinecap: "round", strokeLinejoin: "round", strokeWidth: 2, d: "M4 6h16M4 12h16M4 18h16" }) }) })
|
|
68
68
|
] })
|
|
69
69
|
] }) }),
|
|
70
|
-
|
|
71
|
-
|
|
72
|
-
/* @__PURE__ */ e(
|
|
73
|
-
|
|
70
|
+
i && /* @__PURE__ */ t("div", { className: "gx-nav-dropdown", children: [
|
|
71
|
+
c,
|
|
72
|
+
/* @__PURE__ */ e(u, { to: "/about", onClick: () => h(!1), className: "gx-nav-dropdown-link", children: "About" }),
|
|
73
|
+
l && /* @__PURE__ */ e("a", { href: l, target: "_blank", rel: "noopener noreferrer", className: "gx-nav-dropdown-link", children: "GitHub ↗" })
|
|
74
74
|
] })
|
|
75
75
|
] });
|
|
76
76
|
}
|
|
77
|
-
const
|
|
77
|
+
const M = [
|
|
78
78
|
"A description of what happened and what you expected",
|
|
79
79
|
"Your input files (if applicable)",
|
|
80
80
|
"Browser name and version",
|
|
81
81
|
"Steps to reproduce the issue"
|
|
82
82
|
];
|
|
83
|
-
function
|
|
84
|
-
const
|
|
85
|
-
return /* @__PURE__ */ e("div", { className: "gx-modal-overlay", onClick:
|
|
86
|
-
/* @__PURE__ */
|
|
83
|
+
function B({ onClose: n, bugReportEmail: a, bugReportUrl: o, bugReportItems: r }) {
|
|
84
|
+
const l = r ?? M;
|
|
85
|
+
return /* @__PURE__ */ e("div", { className: "gx-modal-overlay", onClick: n, children: /* @__PURE__ */ t("div", { className: "gx-modal", onClick: (s) => s.stopPropagation(), children: [
|
|
86
|
+
/* @__PURE__ */ t("div", { className: "gx-modal-header", children: [
|
|
87
87
|
/* @__PURE__ */ e("h3", { className: "gx-modal-title", children: "Report a Bug" }),
|
|
88
|
-
/* @__PURE__ */ e("button", { className: "gx-modal-close", onClick:
|
|
88
|
+
/* @__PURE__ */ e("button", { className: "gx-modal-close", onClick: n, "aria-label": "Close", children: "×" })
|
|
89
89
|
] }),
|
|
90
|
-
/* @__PURE__ */
|
|
90
|
+
/* @__PURE__ */ t("div", { className: "gx-modal-body", children: [
|
|
91
91
|
/* @__PURE__ */ e("p", { children: "To report a bug, please email the following to:" }),
|
|
92
|
-
/* @__PURE__ */ e("p", { className: "gx-modal-email", children: /* @__PURE__ */ e("a", { href: `mailto:${
|
|
93
|
-
/* @__PURE__ */
|
|
92
|
+
/* @__PURE__ */ e("p", { className: "gx-modal-email", children: /* @__PURE__ */ e("a", { href: `mailto:${a}`, children: a }) }),
|
|
93
|
+
/* @__PURE__ */ t("div", { className: "gx-modal-checklist", children: [
|
|
94
94
|
/* @__PURE__ */ e("p", { className: "gx-modal-checklist-title", children: "Please include:" }),
|
|
95
|
-
/* @__PURE__ */ e("ol", { className: "gx-modal-checklist-items", children:
|
|
95
|
+
/* @__PURE__ */ e("ol", { className: "gx-modal-checklist-items", children: l.map((s, c) => /* @__PURE__ */ e("li", { children: s }, c)) })
|
|
96
96
|
] }),
|
|
97
|
-
o && /* @__PURE__ */
|
|
97
|
+
o && /* @__PURE__ */ t("p", { className: "gx-modal-github-hint", children: [
|
|
98
98
|
"You can also open an issue on",
|
|
99
99
|
" ",
|
|
100
100
|
/* @__PURE__ */ e("a", { href: o, target: "_blank", rel: "noopener noreferrer", children: "GitHub" }),
|
|
@@ -103,118 +103,118 @@ function C({ onClose: a, bugReportEmail: n, bugReportUrl: o, bugReportItems: r }
|
|
|
103
103
|
] })
|
|
104
104
|
] }) });
|
|
105
105
|
}
|
|
106
|
-
function L({ appName:
|
|
107
|
-
const [
|
|
108
|
-
function
|
|
109
|
-
|
|
106
|
+
function L({ appName: n = "GenomicX", bugReportEmail: a, bugReportUrl: o, onReportBug: r, bugReportItems: l }) {
|
|
107
|
+
const [s, c] = x(!1);
|
|
108
|
+
function i() {
|
|
109
|
+
a ? c(!0) : r && r();
|
|
110
110
|
}
|
|
111
|
-
return /* @__PURE__ */
|
|
112
|
-
/* @__PURE__ */ e("footer", { className: "gx-footer", children: /* @__PURE__ */ e("div", { className: "gx-footer-inner", children: /* @__PURE__ */
|
|
113
|
-
/* @__PURE__ */
|
|
114
|
-
/* @__PURE__ */
|
|
115
|
-
|
|
111
|
+
return /* @__PURE__ */ t(f, { children: [
|
|
112
|
+
/* @__PURE__ */ e("footer", { className: "gx-footer", children: /* @__PURE__ */ e("div", { className: "gx-footer-inner", children: /* @__PURE__ */ t("div", { className: "gx-footer-content", children: [
|
|
113
|
+
/* @__PURE__ */ t("div", { className: "gx-footer-text", children: [
|
|
114
|
+
/* @__PURE__ */ t("p", { className: "gx-footer-text-title", children: [
|
|
115
|
+
n,
|
|
116
116
|
" — Powered by WebAssembly"
|
|
117
117
|
] }),
|
|
118
118
|
/* @__PURE__ */ e("p", { className: "gx-footer-text-sub", children: "All processing runs locally in your browser — no data leaves your computer" })
|
|
119
119
|
] }),
|
|
120
|
-
/* @__PURE__ */
|
|
120
|
+
/* @__PURE__ */ t("div", { className: "gx-footer-links", children: [
|
|
121
121
|
/* @__PURE__ */ e("a", { href: "https://genomicx.org", target: "_blank", rel: "noopener noreferrer", className: "gx-footer-link", children: "genomicx.org" }),
|
|
122
|
-
(
|
|
122
|
+
(a || o || r) && /* @__PURE__ */ e("button", { onClick: i, className: "gx-footer-link", children: "Report Bug" })
|
|
123
123
|
] })
|
|
124
124
|
] }) }) }),
|
|
125
|
-
|
|
126
|
-
|
|
125
|
+
s && a && /* @__PURE__ */ e(
|
|
126
|
+
B,
|
|
127
127
|
{
|
|
128
|
-
onClose: () =>
|
|
129
|
-
bugReportEmail:
|
|
128
|
+
onClose: () => c(!1),
|
|
129
|
+
bugReportEmail: a,
|
|
130
130
|
bugReportUrl: o,
|
|
131
|
-
bugReportItems:
|
|
131
|
+
bugReportItems: l
|
|
132
132
|
}
|
|
133
133
|
)
|
|
134
134
|
] });
|
|
135
135
|
}
|
|
136
|
-
function
|
|
137
|
-
return /* @__PURE__ */
|
|
138
|
-
/* @__PURE__ */ e(
|
|
139
|
-
/* @__PURE__ */ e("main", { style: { flex: 1 }, children:
|
|
140
|
-
/* @__PURE__ */ e(L, { appName: o.appName, onReportBug:
|
|
136
|
+
function _({ children: n, onReportBug: a, ...o }) {
|
|
137
|
+
return /* @__PURE__ */ t("div", { style: { minHeight: "100vh", display: "flex", flexDirection: "column", background: "var(--gx-bg)" }, children: [
|
|
138
|
+
/* @__PURE__ */ e(C, { ...o }),
|
|
139
|
+
/* @__PURE__ */ e("main", { style: { flex: 1 }, children: n }),
|
|
140
|
+
/* @__PURE__ */ e(L, { appName: o.appName, onReportBug: a })
|
|
141
141
|
] });
|
|
142
142
|
}
|
|
143
|
-
function
|
|
144
|
-
const r = y(null),
|
|
145
|
-
navigator.clipboard.writeText(
|
|
143
|
+
function E({ logs: n, progress: a, title: o = "Console" }) {
|
|
144
|
+
const r = y(null), l = () => {
|
|
145
|
+
navigator.clipboard.writeText(n.join(`
|
|
146
146
|
`)).then(() => {
|
|
147
|
-
|
|
147
|
+
N.success("Logs copied to clipboard!");
|
|
148
148
|
}).catch(() => {
|
|
149
|
-
|
|
149
|
+
N.error("Failed to copy logs");
|
|
150
150
|
});
|
|
151
|
-
},
|
|
152
|
-
return /* @__PURE__ */
|
|
153
|
-
|
|
154
|
-
/* @__PURE__ */
|
|
155
|
-
/* @__PURE__ */ e("span", { className: "gx-console-progress-step", children:
|
|
156
|
-
/* @__PURE__ */
|
|
157
|
-
|
|
151
|
+
}, s = a && a.step !== "idle" && a.step !== "Complete!";
|
|
152
|
+
return /* @__PURE__ */ t("div", { className: "gx-console", children: [
|
|
153
|
+
s && /* @__PURE__ */ t("div", { className: "gx-console-progress", children: [
|
|
154
|
+
/* @__PURE__ */ t("div", { className: "gx-console-progress-row", children: [
|
|
155
|
+
/* @__PURE__ */ e("span", { className: "gx-console-progress-step", children: a.step }),
|
|
156
|
+
/* @__PURE__ */ t("span", { className: "gx-console-progress-pct", children: [
|
|
157
|
+
a.percent,
|
|
158
158
|
"%"
|
|
159
159
|
] })
|
|
160
160
|
] }),
|
|
161
|
-
/* @__PURE__ */ e("div", { className: "progress-bg", children: /* @__PURE__ */ e("div", { className: "progress-bar", style: { width: `${
|
|
162
|
-
|
|
161
|
+
/* @__PURE__ */ e("div", { className: "progress-bg", children: /* @__PURE__ */ e("div", { className: "progress-bar", style: { width: `${a.percent}%` } }) }),
|
|
162
|
+
a.message && /* @__PURE__ */ e("div", { className: "gx-console-progress-msg", children: a.message })
|
|
163
163
|
] }),
|
|
164
|
-
/* @__PURE__ */
|
|
165
|
-
/* @__PURE__ */
|
|
164
|
+
/* @__PURE__ */ t("div", { className: "gx-console-header", children: [
|
|
165
|
+
/* @__PURE__ */ t("div", { className: "gx-console-title-row", children: [
|
|
166
166
|
/* @__PURE__ */ e("h3", { className: "gx-console-title", children: o }),
|
|
167
|
-
/* @__PURE__ */
|
|
167
|
+
/* @__PURE__ */ t("span", { className: "gx-console-count", children: [
|
|
168
168
|
"(",
|
|
169
|
-
|
|
169
|
+
n.length,
|
|
170
170
|
" messages)"
|
|
171
171
|
] })
|
|
172
172
|
] }),
|
|
173
|
-
/* @__PURE__ */
|
|
173
|
+
/* @__PURE__ */ t("button", { onClick: l, className: "gx-console-copy", disabled: n.length === 0, children: [
|
|
174
174
|
/* @__PURE__ */ e("svg", { className: "gx-console-copy-icon", fill: "none", stroke: "currentColor", viewBox: "0 0 24 24", children: /* @__PURE__ */ e("path", { strokeLinecap: "round", strokeLinejoin: "round", strokeWidth: 2, d: "M8 16H6a2 2 0 01-2-2V6a2 2 0 012-2h8a2 2 0 012 2v2m-6 12h8a2 2 0 002-2v-8a2 2 0 00-2-2h-8a2 2 0 00-2 2v8a2 2 0 002 2z" }) }),
|
|
175
175
|
"Copy"
|
|
176
176
|
] })
|
|
177
177
|
] }),
|
|
178
|
-
/* @__PURE__ */ e("div", { ref: r, className: "gx-console-body", children:
|
|
178
|
+
/* @__PURE__ */ e("div", { ref: r, className: "gx-console-body", children: n.length === 0 ? /* @__PURE__ */ e("div", { className: "gx-console-empty", children: "No logs yet..." }) : n.map((c, i) => /* @__PURE__ */ e("div", { className: "gx-console-line", children: c }, i)) })
|
|
179
179
|
] });
|
|
180
180
|
}
|
|
181
|
-
function
|
|
182
|
-
files:
|
|
183
|
-
onFilesChange:
|
|
181
|
+
function H({
|
|
182
|
+
files: n,
|
|
183
|
+
onFilesChange: a,
|
|
184
184
|
disabled: o = !1,
|
|
185
185
|
multiple: r = !0,
|
|
186
|
-
accept:
|
|
187
|
-
label:
|
|
188
|
-
hint:
|
|
189
|
-
filterFn:
|
|
186
|
+
accept: l = ".fasta,.fa,.fna,.fsa,.fasta.gz,.fa.gz,.fna.gz",
|
|
187
|
+
label: s = "Drop files here or click to browse",
|
|
188
|
+
hint: c,
|
|
189
|
+
filterFn: i
|
|
190
190
|
}) {
|
|
191
|
-
const
|
|
191
|
+
const h = v(
|
|
192
192
|
(d) => {
|
|
193
193
|
if (!d.target.files) return;
|
|
194
|
-
let
|
|
195
|
-
|
|
194
|
+
let g = Array.from(d.target.files);
|
|
195
|
+
i && (g = g.filter(i)), g.length > 0 && a(g);
|
|
196
196
|
},
|
|
197
|
-
[
|
|
198
|
-
),
|
|
197
|
+
[a, i]
|
|
198
|
+
), m = v(
|
|
199
199
|
(d) => {
|
|
200
200
|
if (d.preventDefault(), !d.dataTransfer.files) return;
|
|
201
|
-
let
|
|
202
|
-
|
|
201
|
+
let g = Array.from(d.dataTransfer.files);
|
|
202
|
+
i && (g = g.filter(i)), g.length > 0 && a(g);
|
|
203
203
|
},
|
|
204
|
-
[
|
|
204
|
+
[a, i]
|
|
205
205
|
);
|
|
206
|
-
return /* @__PURE__ */ e("div", { className: "gx-file-upload", onDrop:
|
|
206
|
+
return /* @__PURE__ */ e("div", { className: "gx-file-upload", onDrop: m, onDragOver: (d) => d.preventDefault(), children: /* @__PURE__ */ t("label", { className: "gx-file-upload-area", children: [
|
|
207
207
|
/* @__PURE__ */ e(
|
|
208
208
|
"input",
|
|
209
209
|
{
|
|
210
210
|
type: "file",
|
|
211
211
|
multiple: r,
|
|
212
|
-
accept:
|
|
213
|
-
onChange:
|
|
212
|
+
accept: l,
|
|
213
|
+
onChange: h,
|
|
214
214
|
disabled: o
|
|
215
215
|
}
|
|
216
216
|
),
|
|
217
|
-
/* @__PURE__ */
|
|
217
|
+
/* @__PURE__ */ t(
|
|
218
218
|
"svg",
|
|
219
219
|
{
|
|
220
220
|
className: "gx-file-upload-icon",
|
|
@@ -232,23 +232,23 @@ function S({
|
|
|
232
232
|
]
|
|
233
233
|
}
|
|
234
234
|
),
|
|
235
|
-
|
|
236
|
-
/* @__PURE__ */ e("div", { className: "gx-file-upload-label", children:
|
|
237
|
-
|
|
238
|
-
] }) : /* @__PURE__ */
|
|
239
|
-
/* @__PURE__ */
|
|
240
|
-
|
|
235
|
+
n.length === 0 ? /* @__PURE__ */ t(f, { children: [
|
|
236
|
+
/* @__PURE__ */ e("div", { className: "gx-file-upload-label", children: s }),
|
|
237
|
+
c && /* @__PURE__ */ e("div", { className: "gx-file-upload-hint", children: c })
|
|
238
|
+
] }) : /* @__PURE__ */ t(f, { children: [
|
|
239
|
+
/* @__PURE__ */ t("div", { className: "gx-file-upload-label", children: [
|
|
240
|
+
n.length,
|
|
241
241
|
" file",
|
|
242
|
-
|
|
242
|
+
n.length !== 1 ? "s" : "",
|
|
243
243
|
" selected"
|
|
244
244
|
] }),
|
|
245
|
-
/* @__PURE__ */ e("ul", { className: "gx-file-list", children:
|
|
245
|
+
/* @__PURE__ */ e("ul", { className: "gx-file-list", children: n.map((d) => /* @__PURE__ */ e("li", { children: d.name }, d.name)) })
|
|
246
246
|
] })
|
|
247
247
|
] }) });
|
|
248
248
|
}
|
|
249
|
-
function
|
|
250
|
-
const o = Math.min(100, Math.max(0,
|
|
251
|
-
return /* @__PURE__ */
|
|
249
|
+
function q({ value: n, label: a }) {
|
|
250
|
+
const o = Math.min(100, Math.max(0, n));
|
|
251
|
+
return /* @__PURE__ */ t("div", { className: "gx-progress-wrap", children: [
|
|
252
252
|
/* @__PURE__ */ e(
|
|
253
253
|
"div",
|
|
254
254
|
{
|
|
@@ -260,88 +260,142 @@ function _({ value: a, label: n }) {
|
|
|
260
260
|
children: /* @__PURE__ */ e("div", { className: "progress-bar", style: { width: `${o}%` } })
|
|
261
261
|
}
|
|
262
262
|
),
|
|
263
|
-
|
|
263
|
+
a && /* @__PURE__ */ e("p", { className: "gx-progress-label", children: a })
|
|
264
264
|
] });
|
|
265
265
|
}
|
|
266
|
-
const
|
|
267
|
-
info: /* @__PURE__ */
|
|
266
|
+
const S = {
|
|
267
|
+
info: /* @__PURE__ */ t("svg", { width: "20", height: "20", viewBox: "0 0 24 24", fill: "none", stroke: "currentColor", strokeWidth: "2", "aria-hidden": "true", children: [
|
|
268
268
|
/* @__PURE__ */ e("circle", { cx: "12", cy: "12", r: "10" }),
|
|
269
269
|
/* @__PURE__ */ e("line", { x1: "12", y1: "16", x2: "12", y2: "12" }),
|
|
270
270
|
/* @__PURE__ */ e("line", { x1: "12", y1: "8", x2: "12.01", y2: "8" })
|
|
271
271
|
] }),
|
|
272
|
-
warning: /* @__PURE__ */
|
|
272
|
+
warning: /* @__PURE__ */ t("svg", { width: "20", height: "20", viewBox: "0 0 24 24", fill: "none", stroke: "currentColor", strokeWidth: "2", "aria-hidden": "true", children: [
|
|
273
273
|
/* @__PURE__ */ e("path", { d: "M10.29 3.86L1.82 18a2 2 0 0 0 1.71 3h16.94a2 2 0 0 0 1.71-3L13.71 3.86a2 2 0 0 0-3.42 0z" }),
|
|
274
274
|
/* @__PURE__ */ e("line", { x1: "12", y1: "9", x2: "12", y2: "13" }),
|
|
275
275
|
/* @__PURE__ */ e("line", { x1: "12", y1: "17", x2: "12.01", y2: "17" })
|
|
276
276
|
] }),
|
|
277
|
-
error: /* @__PURE__ */
|
|
277
|
+
error: /* @__PURE__ */ t("svg", { width: "20", height: "20", viewBox: "0 0 24 24", fill: "none", stroke: "currentColor", strokeWidth: "2", "aria-hidden": "true", children: [
|
|
278
278
|
/* @__PURE__ */ e("circle", { cx: "12", cy: "12", r: "10" }),
|
|
279
279
|
/* @__PURE__ */ e("line", { x1: "15", y1: "9", x2: "9", y2: "15" }),
|
|
280
280
|
/* @__PURE__ */ e("line", { x1: "9", y1: "9", x2: "15", y2: "15" })
|
|
281
281
|
] }),
|
|
282
|
-
success: /* @__PURE__ */
|
|
282
|
+
success: /* @__PURE__ */ t("svg", { width: "20", height: "20", viewBox: "0 0 24 24", fill: "none", stroke: "currentColor", strokeWidth: "2", "aria-hidden": "true", children: [
|
|
283
283
|
/* @__PURE__ */ e("path", { d: "M22 11.08V12a10 10 0 1 1-5.93-9.14" }),
|
|
284
284
|
/* @__PURE__ */ e("polyline", { points: "22 4 12 14.01 9 11.01" })
|
|
285
285
|
] })
|
|
286
286
|
};
|
|
287
|
-
function
|
|
288
|
-
return /* @__PURE__ */
|
|
289
|
-
/* @__PURE__ */ e("span", { className: `gx-alert-icon gx-alert-icon--${
|
|
290
|
-
/* @__PURE__ */ e("div", { className: "gx-alert-body", children:
|
|
287
|
+
function P({ variant: n, children: a }) {
|
|
288
|
+
return /* @__PURE__ */ t("div", { className: `gx-alert gx-alert--${n}`, role: "alert", children: [
|
|
289
|
+
/* @__PURE__ */ e("span", { className: `gx-alert-icon gx-alert-icon--${n}`, children: S[n] }),
|
|
290
|
+
/* @__PURE__ */ e("div", { className: "gx-alert-body", children: a })
|
|
291
291
|
] });
|
|
292
292
|
}
|
|
293
|
-
function
|
|
294
|
-
return /* @__PURE__ */ e("span", { className: `gx-badge gx-badge--${
|
|
293
|
+
function U({ variant: n, children: a }) {
|
|
294
|
+
return /* @__PURE__ */ e("span", { className: `gx-badge gx-badge--${n}`, children: a });
|
|
295
295
|
}
|
|
296
|
-
const
|
|
297
|
-
async function
|
|
298
|
-
const o = `${
|
|
299
|
-
if (
|
|
300
|
-
const [r,
|
|
301
|
-
fetch(`${
|
|
302
|
-
fetch(`${
|
|
296
|
+
const z = "https://static.genomicx.org/wasm", p = /* @__PURE__ */ new Map();
|
|
297
|
+
async function A(n, a = z) {
|
|
298
|
+
const o = `${a}/${n}`;
|
|
299
|
+
if (p.has(o)) return p.get(o);
|
|
300
|
+
const [r, l] = await Promise.all([
|
|
301
|
+
fetch(`${a}/${n}.js`),
|
|
302
|
+
fetch(`${a}/${n}.wasm`)
|
|
303
303
|
]);
|
|
304
|
-
if (!r.ok) throw new Error(`Failed to fetch ${
|
|
305
|
-
if (!
|
|
306
|
-
const [
|
|
304
|
+
if (!r.ok) throw new Error(`Failed to fetch ${n}.js: ${r.status}`);
|
|
305
|
+
if (!l.ok) throw new Error(`Failed to fetch ${n}.wasm: ${l.status}`);
|
|
306
|
+
const [s, c] = await Promise.all([
|
|
307
307
|
r.text(),
|
|
308
|
-
|
|
309
|
-
]),
|
|
310
|
-
return
|
|
308
|
+
l.arrayBuffer()
|
|
309
|
+
]), h = { factory: new Function("Module", s + "; return Module;")({}), wasmBinary: c };
|
|
310
|
+
return p.set(o, h), h;
|
|
311
311
|
}
|
|
312
|
-
async function
|
|
313
|
-
const { factory: o, wasmBinary: r } = await
|
|
312
|
+
async function F(n, a) {
|
|
313
|
+
const { factory: o, wasmBinary: r } = await A(n, a), l = [], s = [], c = await o({
|
|
314
314
|
wasmBinary: r.slice(0),
|
|
315
|
-
print: (
|
|
316
|
-
printErr: (
|
|
315
|
+
print: (i) => l.push(i),
|
|
316
|
+
printErr: (i) => s.push(i),
|
|
317
317
|
noInitialRun: !0
|
|
318
318
|
});
|
|
319
|
-
return
|
|
319
|
+
return c._stdout = l, c._stderr = s, c;
|
|
320
320
|
}
|
|
321
|
-
function
|
|
322
|
-
const o = URL.createObjectURL(
|
|
323
|
-
r.href = o, r.download =
|
|
321
|
+
function w(n, a) {
|
|
322
|
+
const o = URL.createObjectURL(n), r = document.createElement("a");
|
|
323
|
+
r.href = o, r.download = a, r.click(), URL.revokeObjectURL(o);
|
|
324
324
|
}
|
|
325
|
-
function
|
|
326
|
-
|
|
325
|
+
function V(n, a, o = "text/plain") {
|
|
326
|
+
w(new Blob([n], { type: o }), a);
|
|
327
327
|
}
|
|
328
|
-
function
|
|
329
|
-
|
|
328
|
+
function X(n, a) {
|
|
329
|
+
w(new Blob([n]), a);
|
|
330
|
+
}
|
|
331
|
+
function $(n) {
|
|
332
|
+
const a = n.split(/(?=^LOCUS\s)/m).filter((r) => r.trim().startsWith("LOCUS")), o = [];
|
|
333
|
+
for (const r of a) {
|
|
334
|
+
const l = r.match(/^LOCUS\s+(\S+)/m);
|
|
335
|
+
if (!l) continue;
|
|
336
|
+
const s = l[1], c = r.match(/ORIGIN([\s\S]*?)(\/\/|$)/);
|
|
337
|
+
if (!c) continue;
|
|
338
|
+
const i = c[1].replace(/[^a-zA-Z]/g, "").toUpperCase();
|
|
339
|
+
i && o.push({ name: s, sequence: i });
|
|
340
|
+
}
|
|
341
|
+
return o;
|
|
342
|
+
}
|
|
343
|
+
function W(n) {
|
|
344
|
+
const a = [];
|
|
345
|
+
let o = "", r = [];
|
|
346
|
+
for (const l of n.split(`
|
|
347
|
+
`)) {
|
|
348
|
+
const s = l.trim();
|
|
349
|
+
s.startsWith(">") ? (o && a.push({ name: o, sequence: r.join("") }), o = s.slice(1).split(/\s+/)[0], r = []) : s && o && r.push(s.toUpperCase());
|
|
350
|
+
}
|
|
351
|
+
return o && a.push({ name: o, sequence: r.join("") }), a;
|
|
352
|
+
}
|
|
353
|
+
async function T(n) {
|
|
354
|
+
const a = new DecompressionStream("gzip"), o = a.writable.getWriter(), r = a.readable.getReader();
|
|
355
|
+
o.write(n), o.close();
|
|
356
|
+
const l = [];
|
|
357
|
+
let s = !1;
|
|
358
|
+
for (; !s; ) {
|
|
359
|
+
const m = await r.read();
|
|
360
|
+
s = m.done, m.value && l.push(m.value);
|
|
361
|
+
}
|
|
362
|
+
const c = l.reduce((m, d) => m + d.length, 0), i = new Uint8Array(c);
|
|
363
|
+
let h = 0;
|
|
364
|
+
for (const m of l)
|
|
365
|
+
i.set(m, h), h += m.length;
|
|
366
|
+
return new TextDecoder().decode(i);
|
|
367
|
+
}
|
|
368
|
+
const j = /* @__PURE__ */ new Set([".gb", ".gbk", ".genbank"]);
|
|
369
|
+
function D(n) {
|
|
370
|
+
const a = n.endsWith(".gz") ? n.slice(0, -3) : n, o = a.slice(a.lastIndexOf(".")).toLowerCase();
|
|
371
|
+
return j.has(o);
|
|
372
|
+
}
|
|
373
|
+
async function Y(n) {
|
|
374
|
+
const a = n.name.endsWith(".gz");
|
|
375
|
+
let o;
|
|
376
|
+
if (a) {
|
|
377
|
+
const r = await n.arrayBuffer();
|
|
378
|
+
o = await T(r);
|
|
379
|
+
} else
|
|
380
|
+
o = await n.text();
|
|
381
|
+
return D(n.name) ? $(o) : W(o);
|
|
330
382
|
}
|
|
331
383
|
export {
|
|
332
|
-
|
|
384
|
+
P as Alert,
|
|
333
385
|
L as AppFooter,
|
|
334
|
-
|
|
335
|
-
|
|
336
|
-
|
|
337
|
-
|
|
338
|
-
|
|
339
|
-
|
|
340
|
-
|
|
341
|
-
|
|
342
|
-
|
|
343
|
-
|
|
344
|
-
|
|
345
|
-
|
|
346
|
-
|
|
386
|
+
_ as AppShell,
|
|
387
|
+
B as BugReportModal,
|
|
388
|
+
H as FileUpload,
|
|
389
|
+
E as LogConsole,
|
|
390
|
+
C as NavBar,
|
|
391
|
+
q as ProgressBar,
|
|
392
|
+
U as StatusBadge,
|
|
393
|
+
k as ThemeToggle,
|
|
394
|
+
F as createModuleInstance,
|
|
395
|
+
w as downloadBlob,
|
|
396
|
+
X as downloadBuffer,
|
|
397
|
+
V as downloadText,
|
|
398
|
+
A as loadWasmModule,
|
|
399
|
+
$ as parseGenbankString,
|
|
400
|
+
Y as parseSequenceFile
|
|
347
401
|
};
|
|
@@ -0,0 +1,13 @@
|
|
|
1
|
+
/** Parse a multi-record GenBank string into name/sequence pairs. */
|
|
2
|
+
export declare function parseGenbankString(text: string): {
|
|
3
|
+
name: string;
|
|
4
|
+
sequence: string;
|
|
5
|
+
}[];
|
|
6
|
+
/**
|
|
7
|
+
* Parse a sequence File (FASTA or GenBank, optionally gzip-compressed)
|
|
8
|
+
* into an array of { name, sequence } records.
|
|
9
|
+
*/
|
|
10
|
+
export declare function parseSequenceFile(file: File): Promise<{
|
|
11
|
+
name: string;
|
|
12
|
+
sequence: string;
|
|
13
|
+
}[]>;
|
package/package.json
CHANGED