@genome-spy/core 0.76.0 → 0.78.0

package/dist/src/view/containerMutationHelper.js

@@ -4,6 +4,10 @@ import {
 } from "../data/flowInit.js";
 import { configureViewOpacity } from "../genomeSpy/viewHierarchyConfig.js";
 import { ensureAssembliesForView } from "../genome/assemblyPreflight.js";
+import {
+    attachViewLevelScaleConfigs,
+    clearViewLevelScaleConfigs,
+} from "../scales/viewLevelScaleConfig.js";
 import { finalizeSubtreeGraphics } from "./viewUtils.js";
 
 /**
@@ -68,6 +72,11 @@ export default class ContainerMutationHelper {
             this.options.createViewOptions
         );
 
+        insertAt(insertIndex, childSpec);
+        const insertionResult = this.options.insertView(childView, insertIndex);
+
+        attachViewLevelScaleConfigs(this.container);
+
         // Reminder: ensure assemblies from the real child hierarchy before any
         // downstream work that may initialize scales (axis prep / encoders).
         await ensureAssembliesForView(
@@ -75,9 +84,6 @@ export default class ContainerMutationHelper {
             this.container.context.genomeStore
         );
 
-        insertAt(insertIndex, childSpec);
-        const insertionResult = this.options.insertView(childView, insertIndex);
-
         if (this.options.prepareView) {
             await this.options.prepareView(
                 childView,
@@ -114,12 +120,14 @@ export default class ContainerMutationHelper {
      */
     async removeChildAt(index) {
         const { removeAt } = this.options.getChildSpecs();
+        clearViewLevelScaleConfigs(this.container);
         this.options.removeView(index);
         removeAt(index);
 
         if (this.options.afterRemove) {
             await this.options.afterRemove(index);
         }
+        attachViewLevelScaleConfigs(this.container);
 
         if (this.options.requestLayout !== false) {
             this.container.invalidateSizeCache();

package/package.json

@@ -7,7 +7,7 @@
   },
   "contributors": [],
   "license": "MIT",
-  "version": "0.76.0",
+  "version": "0.78.0",
   "jsdelivr": "dist/bundle/index.js",
   "unpkg": "dist/bundle/index.js",
   "browser": "dist/bundle/index.js",
@@ -46,7 +46,7 @@
   },
   "dependencies": {
     "@gmod/bam": "^7.1.19",
-    "@gmod/bbi": "^9.0.0",
+    "@gmod/bbi": "^9.2.0",
     "@gmod/bed": "^2.1.10",
     "@gmod/indexedfasta": "^5.0.2",
     "@gmod/tabix": "^3.2.2",
@@ -78,5 +78,5 @@
   "devDependencies": {
     "@types/long": "^4.0.1"
   },
-  "gitHead": "34d821cf5e864972afaa65a3290719e2fdb209c2"
+  "gitHead": "54041db3a590ae8df78fa43aa755b9e07fe3503c"
 }

package/dist/bundle/browser-BTgw5ieH.js

@@ -1,126 +0,0 @@
-import { t as e } from "./chunk-DmhlhrBa.js";
-//#region ../../node_modules/generic-filehandle2/esm/blobFile.js
-var t = class {
-	constructor(e) {
-		this.blob = e;
-	}
-	async read(e, t = 0) {
-		if (!e) return new Uint8Array();
-		let n = t, r = n + e, i = this.blob.slice(n, r);
-		return i.bytes ? i.bytes() : new Uint8Array(await i.arrayBuffer());
-	}
-	async readFile(e) {
-		let t = typeof e == "string" ? e : e?.encoding;
-		if (t === "utf8") return this.blob.text();
-		if (t) throw Error(`unsupported encoding: ${t}`);
-		return this.blob.bytes ? this.blob.bytes() : new Uint8Array(await this.blob.arrayBuffer());
-	}
-	async stat() {
-		return { size: this.blob.size };
-	}
-	async close() {}
-};
-//#endregion
-//#region ../../node_modules/generic-filehandle2/esm/remoteFile.js
-function n(e) {
-	return (typeof e == "object" && e && "message" in e ? e.message : `${e}`).replace(/\.$/, "");
-}
-var r = class {
-	constructor(e, t = {}) {
-		this.baseOverrides = {}, this.url = e;
-		let n = t.fetch || globalThis.fetch.bind(globalThis);
-		t.overrides && (this.baseOverrides = t.overrides), this.fetchImplementation = n;
-	}
-	async fetch(e, t) {
-		let r = (t) => Error(`${n(t)} fetching ${e}`, { cause: t }), i;
-		try {
-			i = await this.fetchImplementation(e, t);
-		} catch (n) {
-			if (`${n}`.includes("Failed to fetch")) {
-				console.warn(`generic-filehandle: refetching ${e} to attempt to work around chrome CORS header caching bug`);
-				try {
-					i = await this.fetchImplementation(e, {
-						...t,
-						cache: "reload"
-					});
-				} catch (e) {
-					throw r(e);
-				}
-			} else throw r(n);
-		}
-		return i;
-	}
-	async read(e, t, n = {}) {
-		if (e === 0) return new Uint8Array();
-		let { headers: r = {}, signal: i, overrides: a = {} } = n;
-		e < Infinity ? r.range = `bytes=${t}-${t + e - 1}` : e === Infinity && t !== 0 && (r.range = `bytes=${t}-`);
-		let o = await this.fetch(this.url, {
-			...this.baseOverrides,
-			...a,
-			headers: {
-				...this.baseOverrides.headers,
-				...a.headers,
-				...r
-			},
-			method: "GET",
-			redirect: "follow",
-			mode: "cors",
-			signal: i
-		});
-		if (!o.ok) throw Error(`HTTP ${o.status} fetching ${this.url}`);
-		if (o.status === 200 && t === 0 || o.status === 206) {
-			let t = o.headers.get("content-range"), n = /\/(\d+)$/.exec(t || "");
-			n?.[1] && (this._stat = { size: parseInt(n[1], 10) });
-			let r = o.bytes ? await o.bytes() : new Uint8Array(await o.arrayBuffer());
-			return r.byteLength <= e ? r : r.subarray(0, e);
-		}
-		throw Error(o.status === 200 ? `${this.url} fetch returned status 200, expected 206` : `HTTP ${o.status} fetching ${this.url}`);
-	}
-	async readFile(e = {}) {
-		let t, n;
-		if (typeof e == "string") t = e, n = {};
-		else {
-			t = e.encoding;
-			let { encoding: r, ...i } = e;
-			n = i;
-		}
-		let { headers: r = {}, signal: i, overrides: a = {} } = n, o = await this.fetch(this.url, {
-			...this.baseOverrides,
-			...a,
-			headers: {
-				...this.baseOverrides.headers,
-				...a.headers,
-				...r
-			},
-			method: "GET",
-			redirect: "follow",
-			mode: "cors",
-			signal: i
-		});
-		if (!o.ok) throw Error(`HTTP ${o.status} fetching ${this.url}`);
-		if (t === "utf8") return o.text();
-		if (t) throw Error(`unsupported encoding: ${t}`);
-		return o.bytes ? o.bytes() : new Uint8Array(await o.arrayBuffer());
-	}
-	async stat() {
-		if (!this._stat && (await this.read(10, 0), !this._stat)) throw Error(`unable to determine size of file at ${this.url}`);
-		return this._stat;
-	}
-	async close() {}
-}, i = /* @__PURE__ */ e({
-	BlobFile: () => t,
-	LocalFile: () => a,
-	RemoteFile: () => r
-}), a = class {
-	readFile() {
-		throw Error("unimplemented");
-	}
-	read() {
-		throw Error("unimplemented");
-	}
-	close() {
-		throw Error("unimplemented");
-	}
-};
-//#endregion
-export { i as n, r, a as t };